RNA–Protein interactions for RNA: ENST00000370496.3

COL9A1-204, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 1,372 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-204ENST00000370496 ANKRD26P1Q6NSI1 321 aa13.8□□□□□ -0.2
COL9A1-204ENST00000370496 H3F3CQ6NXT2 135 aa13.8□□□□□ -0.2
COL9A1-204ENST00000370496 IGFL2Q6UWQ7 119 aa13.8□□□□□ -0.2
COL9A1-204ENST00000370496 FAM47EQ6ZV65 393 aa13.8□□□□□ -0.2
COL9A1-204ENST00000370496 SLC29A4Q7RTT9 530 aa13.8□□□□□ -0.2
COL9A1-204ENST00000370496 RPS19BP1Q86WX3 136 aaKnown RBP13.8□□□□□ -0.2
COL9A1-204ENST00000370496 FAM9CQ8IZT9 166 aa13.8□□□□□ -0.2
COL9A1-204ENST00000370496 OR9A2Q8NGT5 310 aa13.8□□□□□ -0.2
COL9A1-204ENST00000370496 CKAP2Q8WWK9 683 aa13.8□□□□□ -0.2
COL9A1-204ENST00000370496 SENP5Q96HI0 755 aaPredicted RBP13.8□□□□□ -0.2
COL9A1-204ENST00000370496 MAGEB18Q96M61 343 aa13.8□□□□□ -0.2
COL9A1-204ENST00000370496 GAL3ST4Q96RP7 486 aa13.8□□□□□ -0.2
COL9A1-204ENST00000370496 LMF1Q96S06 567 aa13.8□□□□□ -0.2
COL9A1-204ENST00000370496 CDCP1Q9H5V8 836 aa13.8□□□□□ -0.2
COL9A1-204ENST00000370496 REEP4Q9H6H4 257 aa13.8□□□□□ -0.2
COL9A1-204ENST00000370496 SLCO1B3Q9NPD5 702 aa13.8□□□□□ -0.2
COL9A1-204ENST00000370496 STMN3Q9NZ72 180 aa13.8□□□□□ -0.2
COL9A1-204ENST00000370496 OR5H15A6NDH6 313 aa13.79□□□□□ -0.2
COL9A1-204ENST00000370496 SDHDO14521 159 aa13.79□□□□□ -0.2
COL9A1-204ENST00000370496 SCAMP2O15127 329 aaKnown RBP13.79□□□□□ -0.2
COL9A1-204ENST00000370496 PDPK1O15530 556 aa13.79□□□□□ -0.2
COL9A1-204ENST00000370496 MAN1A2O60476 641 aa13.79□□□□□ -0.2
COL9A1-204ENST00000370496 C1QL1O75973 258 aa13.79□□□□□ -0.2
COL9A1-204ENST00000370496 WDPCPO95876 746 aa13.79□□□□□ -0.2
COL9A1-204ENST00000370496 IGKV3-11P04433 115 aa13.79□□□□□ -0.2
COL9A1-204ENST00000370496 LBPP18428 481 aa13.79□□□□□ -0.2
COL9A1-204ENST00000370496 SSTR4P31391 388 aa13.79□□□□□ -0.2
COL9A1-204ENST00000370496 MPIP34949 423 aa13.79□□□□□ -0.2
COL9A1-204ENST00000370496 RPL3P39023 403 aaKnown RBP13.79□□□□□ -0.2
COL9A1-204ENST00000370496 NCBP2P52298 156 aaKnown RBP eCLIP13.79□□□□□ -0.2
COL9A1-204ENST00000370496 RNF4P78317 190 aa13.79□□□□□ -0.2
COL9A1-204ENST00000370496 OC90Q02509 493 aaPredicted RBP13.79□□□□□ -0.2
COL9A1-204ENST00000370496 EMX2Q04743 252 aa13.79□□□□□ -0.2
COL9A1-204ENST00000370496 DUSP2Q05923 314 aa13.79□□□□□ -0.2
COL9A1-204ENST00000370496 SLC6A19Q695T7 634 aa13.79□□□□□ -0.2
COL9A1-204ENST00000370496 NXNQ6DKJ4 435 aa13.79□□□□□ -0.2
COL9A1-204ENST00000370496 PRICKLE2Q7Z3G6 844 aa13.79□□□□□ -0.2
COL9A1-204ENST00000370496 R3HCC1LQ7Z5L2 792 aaKnown RBP13.79□□□□□ -0.2
COL9A1-204ENST00000370496 WDR75Q8IWA0 830 aaKnown RBP13.79□□□□□ -0.2
COL9A1-204ENST00000370496 CCDC116Q8IYX3 515 aa13.79□□□□□ -0.2
COL9A1-204ENST00000370496 ZNF843Q8N446 348 aa13.79□□□□□ -0.2
COL9A1-204ENST00000370496 RBMXL3Q8N7X1 1067 aaKnown RBP13.79□□□□□ -0.2
COL9A1-204ENST00000370496 ADCY4Q8NFM4 1077 aa13.79□□□□□ -0.2
COL9A1-204ENST00000370496 OR5L2Q8NGL0 311 aa13.79□□□□□ -0.2
COL9A1-204ENST00000370496 OR8K3Q8NH51 312 aa13.79□□□□□ -0.2
COL9A1-204ENST00000370496 ZNF681Q96N22 645 aa13.79□□□□□ -0.2
COL9A1-204ENST00000370496 NPAS2Q99743 824 aa13.79□□□□□ -0.2
COL9A1-204ENST00000370496 UTP23Q9BRU9 249 aaKnown RBP13.79□□□□□ -0.2
COL9A1-204ENST00000370496 RNF32Q9H0A6 362 aa13.79□□□□□ -0.2
COL9A1-204ENST00000370496 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.79□□□□□ -0.2
COL9A1-204ENST00000370496 ASIC5Q9NY37 505 aa13.79□□□□□ -0.2
COL9A1-204ENST00000370496 PLA2G3Q9NZ20 509 aa13.79□□□□□ -0.2
COL9A1-204ENST00000370496 MAT2BQ9NZL9 334 aa13.79□□□□□ -0.2
COL9A1-204ENST00000370496 SH3BP4Q9P0V3 963 aa13.79□□□□□ -0.2
COL9A1-204ENST00000370496 LUZP4Q9P127 313 aa13.79□□□□□ -0.2
COL9A1-204ENST00000370496 ANAPC2Q9UJX6 822 aa13.79□□□□□ -0.2
COL9A1-204ENST00000370496 B3GNT3Q9Y2A9 372 aa13.79□□□□□ -0.2
COL9A1-204ENST00000370496 CSAG2Q9Y5P2 127 aa13.79□□□□□ -0.2
COL9A1-204ENST00000370496 SPTA1P02549 2419 aa13.78□□□□□ -0.2
COL9A1-204ENST00000370496 GOLGA8QA0A0J9YX86 632 aa13.78□□□□□ -0.2
COL9A1-204ENST00000370496 GOLGA8OA6NCC3 632 aa13.78□□□□□ -0.2
COL9A1-204ENST00000370496 OR6C76A6NM76 312 aa13.78□□□□□ -0.2
COL9A1-204ENST00000370496 GOLGA8NF8WBI6 632 aa13.78□□□□□ -0.2
COL9A1-204ENST00000370496 PRKNO60260 465 aaPredicted RBP13.78□□□□□ -0.2
COL9A1-204ENST00000370496 CT62P0C5K7 136 aa13.78□□□□□ -0.2
COL9A1-204ENST00000370496 G6PDP11413 515 aa13.78□□□□□ -0.2
COL9A1-204ENST00000370496 EPHA3P29320 983 aa13.78□□□□□ -0.2
COL9A1-204ENST00000370496 MLF1P58340 268 aa13.78□□□□□ -0.2
COL9A1-204ENST00000370496 MRPS35P82673 323 aaKnown RBP13.78□□□□□ -0.2
COL9A1-204ENST00000370496 TLR1Q15399 786 aa13.78□□□□□ -0.2
COL9A1-204ENST00000370496 PRICKLE4Q2TBC4 344 aa13.78□□□□□ -0.2
COL9A1-204ENST00000370496 C9orf40Q8IXQ3 194 aa13.78□□□□□ -0.2
COL9A1-204ENST00000370496 LRRC34Q8IZ02 419 aa13.78□□□□□ -0.2
COL9A1-204ENST00000370496 ZFP28Q8NHY6 868 aa13.78□□□□□ -0.2
COL9A1-204ENST00000370496 SUN3Q8TAQ9 357 aa13.78□□□□□ -0.2
COL9A1-204ENST00000370496 PNPLA2Q96AD5 504 aa13.78□□□□□ -0.2
COL9A1-204ENST00000370496 MTERF3Q96E29 417 aa13.78□□□□□ -0.2
COL9A1-204ENST00000370496 ZNF764Q96H86 408 aaPredicted RBP13.78□□□□□ -0.2
COL9A1-204ENST00000370496 WDR55Q9H6Y2 383 aaPredicted RBP13.78□□□□□ -0.2
COL9A1-204ENST00000370496 SLAMF7Q9NQ25 335 aa13.78□□□□□ -0.2
COL9A1-204ENST00000370496 ANKRD10Q9NXR5 420 aa13.78□□□□□ -0.2
COL9A1-204ENST00000370496 EXO1Q9UQ84 846 aaKnown RBP13.78□□□□□ -0.2
COL9A1-204ENST00000370496 USH1CQ9Y6N9 552 aa13.78□□□□□ -0.2
COL9A1-204ENST00000370496 KALRNO60229 2985 aa13.78□□□□□ -0.2
COL9A1-204ENST00000370496 COL6A6A6NMZ7 2263 aa13.78□□□□□ -0.2
COL9A1-204ENST00000370496 WWP2O00308 870 aa13.77□□□□□ -0.21
COL9A1-204ENST00000370496 DYNC1I1O14576 645 aa13.77□□□□□ -0.21
COL9A1-204ENST00000370496 PRAMEF2O60811 474 aa13.77□□□□□ -0.21
COL9A1-204ENST00000370496 DIAPH2O60879 1101 aa13.77□□□□□ -0.21
COL9A1-204ENST00000370496 ITGA10O75578 1167 aa13.77□□□□□ -0.21
COL9A1-204ENST00000370496 OR2J2O76002 312 aa13.77□□□□□ -0.21
COL9A1-204ENST00000370496 PCSK2P16519 638 aa13.77□□□□□ -0.21
COL9A1-204ENST00000370496 ST13P50502 369 aaKnown RBP13.77□□□□□ -0.21
COL9A1-204ENST00000370496 SSR4P51571 173 aa13.77□□□□□ -0.21
COL9A1-204ENST00000370496 DIO3P55073 304 aa13.77□□□□□ -0.21
COL9A1-204ENST00000370496 SLC37A1P57057 533 aa13.77□□□□□ -0.21
COL9A1-204ENST00000370496 TUBA3CQ13748 450 aa13.77□□□□□ -0.21
COL9A1-204ENST00000370496 PDE7AQ13946 482 aa13.77□□□□□ -0.21
COL9A1-204ENST00000370496 ZNF169Q14929 603 aaPredicted RBP13.77□□□□□ -0.21
COL9A1-204ENST00000370496 EBPQ15125 230 aaKnown RBP13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms