RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 ACOT4Q8N9L9 421 aa19.68■□□□□ 0.74
CCDC88B-203ENST00000359902 FAM46DQ8NEK8 389 aa19.68■□□□□ 0.74
CCDC88B-203ENST00000359902 ELSPBP1Q96BH3 223 aa19.68■□□□□ 0.74
CCDC88B-203ENST00000359902 KCNK12Q9HB15 430 aa19.68■□□□□ 0.74
CCDC88B-203ENST00000359902 CLN6Q9NWW5 311 aa19.68■□□□□ 0.74
CCDC88B-203ENST00000359902 SCHIP1Q9P0W5 487 aaPredicted RBP19.68■□□□□ 0.74
CCDC88B-203ENST00000359902 FAAHO00519 579 aa19.68■□□□□ 0.74
CCDC88B-203ENST00000359902 GRK5P34947 590 aa19.68■□□□□ 0.74
CCDC88B-203ENST00000359902 TNFRSF4P43489 277 aa19.68■□□□□ 0.74
CCDC88B-203ENST00000359902 TUBA1BP68363 451 aa19.68■□□□□ 0.74
CCDC88B-203ENST00000359902 INAQ16352 499 aa19.68■□□□□ 0.74
CCDC88B-203ENST00000359902 TUBA1AQ71U36 451 aa19.68■□□□□ 0.74
CCDC88B-203ENST00000359902 OLIG3Q7RTU3 272 aa19.68■□□□□ 0.74
CCDC88B-203ENST00000359902 TMEM145Q8NBT3 493 aa19.68■□□□□ 0.74
CCDC88B-203ENST00000359902 FAM131CQ96AQ9 280 aa19.68■□□□□ 0.74
CCDC88B-203ENST00000359902 CRELD1Q96HD1 420 aa19.68■□□□□ 0.74
CCDC88B-203ENST00000359902 ARMC7Q9H6L4 198 aa19.68■□□□□ 0.74
CCDC88B-203ENST00000359902 SYNPO2LQ9H987 977 aa19.68■□□□□ 0.74
CCDC88B-203ENST00000359902 EFCAB10A6NFE3 127 aa19.67■□□□□ 0.74
CCDC88B-203ENST00000359902 LINC01565O15544 149 aa19.67■□□□□ 0.74
CCDC88B-203ENST00000359902 OR10H3O60404 316 aa19.67■□□□□ 0.74
CCDC88B-203ENST00000359902 ERAL1O75616 437 aaKnown RBP19.67■□□□□ 0.74
CCDC88B-203ENST00000359902 IGFBP1P08833 259 aaPredicted RBP19.67■□□□□ 0.74
CCDC88B-203ENST00000359902 ATP5A1P25705 553 aaKnown RBP19.67■□□□□ 0.74
CCDC88B-203ENST00000359902 NTSP30990 170 aa19.67■□□□□ 0.74
CCDC88B-203ENST00000359902 AHRP35869 848 aa19.67■□□□□ 0.74
CCDC88B-203ENST00000359902 CRISP3P54108 245 aa19.67■□□□□ 0.74
CCDC88B-203ENST00000359902 ZNF750Q32MQ0 723 aa19.67■□□□□ 0.74
CCDC88B-203ENST00000359902 OTUB1Q96FW1 271 aaPredicted RBP19.67■□□□□ 0.74
CCDC88B-203ENST00000359902 CDCA4Q9BXL8 241 aa19.67■□□□□ 0.74
CCDC88B-203ENST00000359902 TAS2R16Q9NYV7 291 aa19.67■□□□□ 0.74
CCDC88B-203ENST00000359902 CNOT2Q9NZN8 540 aaKnown RBP19.67■□□□□ 0.74
CCDC88B-203ENST00000359902 A4GNTQ9UNA3 340 aa19.67■□□□□ 0.74
CCDC88B-203ENST00000359902 HNRNPCP07910 306 aaKnown RBP eCLIP19.67■□□□□ 0.74
CCDC88B-203ENST00000359902 PRKAG1P54619 331 aa19.67■□□□□ 0.74
CCDC88B-203ENST00000359902 DUSP2Q05923 314 aa19.67■□□□□ 0.74
CCDC88B-203ENST00000359902 PIN1Q13526 163 aaPredicted RBP19.67■□□□□ 0.74
CCDC88B-203ENST00000359902 ARMCX4Q5H9R4 360 aa19.67■□□□□ 0.74
CCDC88B-203ENST00000359902 PGBD2Q6P3X8 592 aa19.67■□□□□ 0.74
CCDC88B-203ENST00000359902 FAM92BQ6ZTR7 304 aa19.67■□□□□ 0.74
CCDC88B-203ENST00000359902 OR2L5Q8NG80 312 aa19.67■□□□□ 0.74
CCDC88B-203ENST00000359902 SUN3Q8TAQ9 357 aa19.67■□□□□ 0.74
CCDC88B-203ENST00000359902 SLC7A13Q8TCU3 470 aa19.67■□□□□ 0.74
CCDC88B-203ENST00000359902 CNRIP1Q96F85 164 aaPredicted RBP19.67■□□□□ 0.74
CCDC88B-203ENST00000359902 CDCA3Q99618 268 aaPredicted RBP19.67■□□□□ 0.74
CCDC88B-203ENST00000359902 SARGQ9BW04 601 aa19.67■□□□□ 0.74
CCDC88B-203ENST00000359902 C11orf16Q9NQ32 467 aa19.67■□□□□ 0.74
CCDC88B-203ENST00000359902 RANBP2P49792 3224 aaKnown RBP19.66■□□□□ 0.74
CCDC88B-203ENST00000359902 ALPPL2P10696 532 aa19.66■□□□□ 0.74
CCDC88B-203ENST00000359902 PPP2R1BP30154 601 aa19.66■□□□□ 0.74
CCDC88B-203ENST00000359902 SLC15A1P46059 708 aa19.66■□□□□ 0.74
CCDC88B-203ENST00000359902 ADPRHP54922 357 aa19.66■□□□□ 0.74
CCDC88B-203ENST00000359902 IFITM3Q01628 133 aa19.66■□□□□ 0.74
CCDC88B-203ENST00000359902 LRRC32Q14392 662 aa19.66■□□□□ 0.74
CCDC88B-203ENST00000359902 TOR1AIP1Q5JTV8 583 aa19.66■□□□□ 0.74
CCDC88B-203ENST00000359902 TMEM64Q6YI46 380 aa19.66■□□□□ 0.74
CCDC88B-203ENST00000359902 KRT73Q86Y46 540 aa19.66■□□□□ 0.74
CCDC88B-203ENST00000359902 SCARF2Q96GP6 870 aaPredicted RBP19.66■□□□□ 0.74
CCDC88B-203ENST00000359902 IL4I1Q96RQ9 567 aa19.66■□□□□ 0.74
CCDC88B-203ENST00000359902 YIPF4Q9BSR8 244 aa19.66■□□□□ 0.74
CCDC88B-203ENST00000359902 TRMT61BQ9BVS5 477 aaKnown RBP19.66■□□□□ 0.74
CCDC88B-203ENST00000359902 PBX4Q9BYU1 374 aa19.66■□□□□ 0.74
CCDC88B-203ENST00000359902 LMAN2LQ9H0V9 348 aa19.66■□□□□ 0.74
CCDC88B-203ENST00000359902 FGF22Q9HCT0 170 aa19.66■□□□□ 0.74
CCDC88B-203ENST00000359902 NDOR1Q9UHB4 597 aa19.66■□□□□ 0.74
CCDC88B-203ENST00000359902 KLHL20Q9Y2M5 609 aa19.66■□□□□ 0.74
CCDC88B-203ENST00000359902 GOLGA4Q13439 2230 aaKnown RBP19.66■□□□□ 0.74
CCDC88B-203ENST00000359902 UNC80Q8N2C7 3258 aa19.65■□□□□ 0.74
CCDC88B-203ENST00000359902 TBC1D3DA0A087WVF3 549 aa19.65■□□□□ 0.74
CCDC88B-203ENST00000359902 TBC1D3IA0A087WXS9 549 aa19.65■□□□□ 0.74
CCDC88B-203ENST00000359902 TBC1D3EA0A087X179 549 aa19.65■□□□□ 0.74
CCDC88B-203ENST00000359902 TBC1D3KA0A087X1G2 549 aa19.65■□□□□ 0.74
CCDC88B-203ENST00000359902 TBC1D3FA6NER0 549 aaPredicted RBP19.65■□□□□ 0.74
CCDC88B-203ENST00000359902 TBC1D3LB9A6J9 549 aa19.65■□□□□ 0.74
CCDC88B-203ENST00000359902 M0R3H8 397 aa19.65■□□□□ 0.74
CCDC88B-203ENST00000359902 TLR4O00206 839 aa19.65■□□□□ 0.74
CCDC88B-203ENST00000359902 SLC31A1O15431 190 aa19.65■□□□□ 0.74
CCDC88B-203ENST00000359902 CNOT3O75175 753 aaKnown RBP19.65■□□□□ 0.74
CCDC88B-203ENST00000359902 SOX14O95416 240 aa19.65■□□□□ 0.74
CCDC88B-203ENST00000359902 RPLP0P05388 317 aaKnown RBP19.65■□□□□ 0.74
CCDC88B-203ENST00000359902 TBC1D3HP0C7X1 549 aa19.65■□□□□ 0.74
CCDC88B-203ENST00000359902 RGS6P49758 472 aa19.65■□□□□ 0.74
CCDC88B-203ENST00000359902 KHKP50053 298 aa19.65■□□□□ 0.74
CCDC88B-203ENST00000359902 LBX1P52954 281 aa19.65■□□□□ 0.74
CCDC88B-203ENST00000359902 SMIM11AP58511 58 aa19.65■□□□□ 0.74
CCDC88B-203ENST00000359902 SNRPGP62308 76 aaKnown RBP19.65■□□□□ 0.74
CCDC88B-203ENST00000359902 TMEM196Q5HYL7 178 aa19.65■□□□□ 0.74
CCDC88B-203ENST00000359902 SLX4IPQ5VYV7 408 aa19.65■□□□□ 0.74
CCDC88B-203ENST00000359902 TBC1D3GQ6DHY5 549 aa19.65■□□□□ 0.74
CCDC88B-203ENST00000359902 TBC1D3CQ6IPX1 549 aa19.65■□□□□ 0.74
CCDC88B-203ENST00000359902 CCDC116Q8IYX3 515 aa19.65■□□□□ 0.74
CCDC88B-203ENST00000359902 TBC1D3Q8IZP1 549 aaPredicted RBP19.65■□□□□ 0.74
CCDC88B-203ENST00000359902 MCFD2Q8NI22 146 aa19.65■□□□□ 0.74
CCDC88B-203ENST00000359902 C9orf43Q8TAL5 461 aaPredicted RBP19.65■□□□□ 0.74
CCDC88B-203ENST00000359902 JPH3Q8WXH2 748 aaPredicted RBP19.65■□□□□ 0.74
CCDC88B-203ENST00000359902 C1QTNF7Q9BXJ2 289 aa19.65■□□□□ 0.74
CCDC88B-203ENST00000359902 SLC25A19Q9HC21 320 aa19.65■□□□□ 0.74
CCDC88B-203ENST00000359902 BCL2L10Q9HD36 194 aa19.65■□□□□ 0.74
CCDC88B-203ENST00000359902 FBXW2Q9UKT8 454 aa19.65■□□□□ 0.74
CCDC88B-203ENST00000359902 CES1P1Q9UKY3 287 aa19.65■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms