RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 INPPL1O15357 1258 aa18.67■□□□□ 0.58
CCDC88B-202ENST00000356786 RAB3BP20337 219 aa18.67■□□□□ 0.58
CCDC88B-202ENST00000356786 ZXDBP98169 803 aa18.67■□□□□ 0.58
CCDC88B-202ENST00000356786 GLT8D1Q68CQ7 371 aa18.67■□□□□ 0.58
CCDC88B-202ENST00000356786 DCUN1D3Q8IWE4 304 aa18.67■□□□□ 0.58
CCDC88B-202ENST00000356786 SYT14Q8NB59 555 aa18.67■□□□□ 0.58
CCDC88B-202ENST00000356786 OR56A3Q8NH54 315 aa18.67■□□□□ 0.58
CCDC88B-202ENST00000356786 PFDN5Q99471 154 aa18.67■□□□□ 0.58
CCDC88B-202ENST00000356786 RBCK1Q9BYM8 510 aa18.67■□□□□ 0.58
CCDC88B-202ENST00000356786 PRRG4Q9BZD6 226 aa18.67■□□□□ 0.58
CCDC88B-202ENST00000356786 IL36AQ9UHA7 158 aa18.67■□□□□ 0.58
CCDC88B-202ENST00000356786 MAFFQ9ULX9 164 aa18.67■□□□□ 0.58
CCDC88B-202ENST00000356786 FARS2O95363 451 aaKnown RBP18.67■□□□□ 0.58
CCDC88B-202ENST00000356786 SFTPBP07988 381 aa18.67■□□□□ 0.58
CCDC88B-202ENST00000356786 RBMXP38159 391 aaKnown RBP18.67■□□□□ 0.58
CCDC88B-202ENST00000356786 RGS6P49758 472 aa18.67■□□□□ 0.58
CCDC88B-202ENST00000356786 DNM1P34Q6PK57 102 aa18.67■□□□□ 0.58
CCDC88B-202ENST00000356786 TMEM102Q8N9M5 508 aaPredicted RBP18.67■□□□□ 0.58
CCDC88B-202ENST00000356786 ADAMTS19Q8TE59 1207 aa18.67■□□□□ 0.58
CCDC88B-202ENST00000356786 SLC22A31A6NKX4 558 aa18.66■□□□□ 0.58
CCDC88B-202ENST00000356786 CSTBP04080 98 aaKnown RBP18.66■□□□□ 0.58
CCDC88B-202ENST00000356786 ZNF26P17031 533 aaPredicted RBP18.66■□□□□ 0.58
CCDC88B-202ENST00000356786 NDUFV2P19404 249 aa18.66■□□□□ 0.58
CCDC88B-202ENST00000356786 HSD11B1P28845 292 aa18.66■□□□□ 0.58
CCDC88B-202ENST00000356786 CDKN1CP49918 316 aaPredicted RBP18.66■□□□□ 0.58
CCDC88B-202ENST00000356786 NOGQ13253 232 aa18.66■□□□□ 0.58
CCDC88B-202ENST00000356786 POU4F3Q15319 338 aa18.66■□□□□ 0.58
CCDC88B-202ENST00000356786 C22orf39Q6P5X5 142 aa18.66■□□□□ 0.58
CCDC88B-202ENST00000356786 ZNF527Q8NB42 609 aa18.66■□□□□ 0.58
CCDC88B-202ENST00000356786 TRIB3Q96RU7 358 aa18.66■□□□□ 0.58
CCDC88B-202ENST00000356786 EPYCQ99645 322 aa18.66■□□□□ 0.58
CCDC88B-202ENST00000356786 ATG5Q9H1Y0 275 aa18.66■□□□□ 0.58
CCDC88B-202ENST00000356786 CARS2Q9HA77 564 aaKnown RBP18.66■□□□□ 0.58
CCDC88B-202ENST00000356786 NENFQ9UMX5 172 aa18.66■□□□□ 0.58
CCDC88B-202ENST00000356786 CD9P21926 228 aa18.66■□□□□ 0.58
CCDC88B-202ENST00000356786 PRDX3P30048 256 aaKnown RBP18.66■□□□□ 0.58
CCDC88B-202ENST00000356786 EIF1AXP47813 144 aaKnown RBP18.66■□□□□ 0.58
CCDC88B-202ENST00000356786 WNT4P56705 351 aa18.66■□□□□ 0.58
CCDC88B-202ENST00000356786 CXCR4P61073 352 aa18.66■□□□□ 0.58
CCDC88B-202ENST00000356786 TMEM115Q12893 351 aaPredicted RBP18.66■□□□□ 0.58
CCDC88B-202ENST00000356786 TCEAL6Q6IPX3 200 aa18.66■□□□□ 0.58
CCDC88B-202ENST00000356786 ABHD13Q7L211 337 aa18.66■□□□□ 0.58
CCDC88B-202ENST00000356786 OR5H6Q8NGV6 325 aa18.66■□□□□ 0.58
CCDC88B-202ENST00000356786 SLC6A7Q99884 636 aa18.66■□□□□ 0.58
CCDC88B-202ENST00000356786 TEX10Q9NXF1 929 aaPredicted RBP18.66■□□□□ 0.58
CCDC88B-202ENST00000356786 RABL2AQ9UBK7 228 aaPredicted RBP18.66■□□□□ 0.58
CCDC88B-202ENST00000356786 GRHPRQ9UBQ7 328 aa18.66■□□□□ 0.58
CCDC88B-202ENST00000356786 A0A1B0GVI7 797 aa18.66■□□□□ 0.58
CCDC88B-202ENST00000356786 ANHXE9PGG2 379 aa18.66■□□□□ 0.58
CCDC88B-202ENST00000356786 SOX30O94993 753 aa18.66■□□□□ 0.58
CCDC88B-202ENST00000356786 GJA1P17302 382 aa18.66■□□□□ 0.58
CCDC88B-202ENST00000356786 CFL1P23528 166 aaKnown RBP18.66■□□□□ 0.58
CCDC88B-202ENST00000356786 HNF1BP35680 557 aa18.66■□□□□ 0.58
CCDC88B-202ENST00000356786 MICAQ29983 383 aa18.66■□□□□ 0.58
CCDC88B-202ENST00000356786 B3GNT7Q8NFL0 401 aa18.66■□□□□ 0.58
CCDC88B-202ENST00000356786 GPRC5BQ9NZH0 403 aa18.66■□□□□ 0.58
CCDC88B-202ENST00000356786 GRM2Q14416 872 aa18.66■□□□□ 0.58
CCDC88B-202ENST00000356786 SMN1Q16637 294 aaKnown RBP18.66■□□□□ 0.58
CCDC88B-202ENST00000356786 DEFB115Q30KQ5 88 aa18.66■□□□□ 0.58
CCDC88B-202ENST00000356786 NAGSQ8N159 534 aa18.66■□□□□ 0.58
CCDC88B-202ENST00000356786 CAMKVQ8NCB2 501 aa18.66■□□□□ 0.58
CCDC88B-202ENST00000356786 CHFRQ96EP1 664 aa18.66■□□□□ 0.58
CCDC88B-202ENST00000356786 NMNAT1Q9HAN9 279 aaPredicted RBP18.66■□□□□ 0.58
CCDC88B-202ENST00000356786 TMEM150CB9EJG8 249 aa18.65■□□□□ 0.58
CCDC88B-202ENST00000356786 EIF1AYO14602 144 aaKnown RBP18.65■□□□□ 0.58
CCDC88B-202ENST00000356786 PET100P0DJ07 73 aa18.65■□□□□ 0.58
CCDC88B-202ENST00000356786 SHMT2P34897 504 aa18.65■□□□□ 0.58
CCDC88B-202ENST00000356786 NRARPQ7Z6K4 114 aa18.65■□□□□ 0.58
CCDC88B-202ENST00000356786 SNIP1Q8TAD8 396 aaKnown RBP18.65■□□□□ 0.58
CCDC88B-202ENST00000356786 PRRC2BQ5JSZ5 2229 aaKnown RBP18.65■□□□□ 0.58
CCDC88B-202ENST00000356786 TSPAN6O43657 245 aa18.65■□□□□ 0.58
CCDC88B-202ENST00000356786 TFP02787 698 aa18.65■□□□□ 0.58
CCDC88B-202ENST00000356786 HCKP08631 526 aa18.65■□□□□ 0.58
CCDC88B-202ENST00000356786 BMP4P12644 408 aa18.65■□□□□ 0.58
CCDC88B-202ENST00000356786 PTPN2P17706 415 aa18.65■□□□□ 0.58
CCDC88B-202ENST00000356786 SOX4Q06945 474 aaPredicted RBP18.65■□□□□ 0.58
CCDC88B-202ENST00000356786 KREMEN2Q8NCW0 462 aa18.65■□□□□ 0.58
CCDC88B-202ENST00000356786 GPR45Q9Y5Y3 372 aa18.65■□□□□ 0.58
CCDC88B-202ENST00000356786 C4BP0C0L5 1744 aa18.65■□□□□ 0.58
CCDC88B-202ENST00000356786 CBLP22681 906 aa18.65■□□□□ 0.58
CCDC88B-202ENST00000356786 RORAP35398 523 aa18.65■□□□□ 0.58
CCDC88B-202ENST00000356786 ID2Q02363 134 aa18.65■□□□□ 0.58
CCDC88B-202ENST00000356786 GRIN2CQ14957 1233 aa18.65■□□□□ 0.58
CCDC88B-202ENST00000356786 CCDC54Q8NEL0 328 aa18.65■□□□□ 0.58
CCDC88B-202ENST00000356786 OR52N2Q8NGI0 321 aa18.65■□□□□ 0.58
CCDC88B-202ENST00000356786 TMEM19Q96HH6 336 aa18.65■□□□□ 0.58
CCDC88B-202ENST00000356786 KCNK12Q9HB15 430 aa18.65■□□□□ 0.58
CCDC88B-202ENST00000356786 GRXCR1A8MXD5 290 aa18.64■□□□□ 0.58
CCDC88B-202ENST00000356786 ACRV1P26436 265 aa18.64■□□□□ 0.58
CCDC88B-202ENST00000356786 GGT2P36268 569 aa18.64■□□□□ 0.58
CCDC88B-202ENST00000356786 GPR4P46093 362 aa18.64■□□□□ 0.58
CCDC88B-202ENST00000356786 GPR17Q13304 367 aa18.64■□□□□ 0.58
CCDC88B-202ENST00000356786 MAPK14Q16539 360 aa18.64■□□□□ 0.58
CCDC88B-202ENST00000356786 TATDN3Q17R31 274 aa18.64■□□□□ 0.58
CCDC88B-202ENST00000356786 TPGS2Q68CL5 300 aa18.64■□□□□ 0.58
CCDC88B-202ENST00000356786 FAM109AQ8N4B1 249 aa18.64■□□□□ 0.58
CCDC88B-202ENST00000356786 CNOT9Q92600 299 aaKnown RBP18.64■□□□□ 0.58
CCDC88B-202ENST00000356786 APIPQ96GX9 242 aa18.64■□□□□ 0.58
CCDC88B-202ENST00000356786 A0A0G2JMP0 313 aa18.64■□□□□ 0.57
CCDC88B-202ENST00000356786 LOC285095A0A1B0GVY8 99 aa18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms