RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 TFPTP0C1Z6 253 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 CDH1P12830 882 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 LAMP2P13473 410 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 NCF1P14598 390 aaPredicted RBP2.18□□□□□ -2.06
VPS54-202ENST00000354504 GLULP15104 373 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 ZNF23P17027 643 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 PSMB5P28074 263 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 PKLRP30613 574 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 PIK3CGP48736 1102 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 HNMTP50135 292 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 ADPRHP54922 357 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 UBE2IP63279 158 aaKnown RBP2.18□□□□□ -2.06
VPS54-202ENST00000354504 HBA1P69905 142 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 CDK3Q00526 305 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 MC1RQ01726 317 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 BNC1Q01954 994 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 CFHR1Q03591 330 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 ZBTB16Q05516 673 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 BCL2L1Q07817 233 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 PMS2P3Q13401 168 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 PPIGQ13427 754 aaKnown RBP eCLIP2.18□□□□□ -2.061e-6■□□□□ 10.9
VPS54-202ENST00000354504 NFE2L1Q14494 772 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 PDK3Q15120 406 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 IRF4Q15306 451 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 RETSATQ6NUM9 610 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 ZFP1Q6P2D0 407 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 C16orf89Q6UX73 402 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 DGAT2L6Q6ZPD8 337 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 DGLUCYQ7Z3D6 616 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 ADAMTSL2Q86TH1 951 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 TRIM74Q86UV6 250 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 THOC6Q86W42 341 aaKnown RBP2.18□□□□□ -2.06
VPS54-202ENST00000354504 WDFY1Q8IWB7 410 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 LEMD2Q8NC56 503 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 OR5AR1Q8NGP9 310 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 HUS1BQ8NHY5 278 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 MIPOL1Q8TD10 442 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 RPS4Y2Q8TD47 263 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 PPP4R1Q8TF05 950 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 SMARCD2Q92925 531 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 PPP2R3CQ969Q6 453 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 CIDECQ96AQ7 238 aaPredicted RBP2.18□□□□□ -2.06
VPS54-202ENST00000354504 CTHRC1Q96CG8 243 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 REXO5Q96IC2 774 aaKnown RBP2.18□□□□□ -2.06
VPS54-202ENST00000354504 DDOQ99489 341 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 HEPHQ9BQS7 1158 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 HGH1Q9BTY7 390 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 MS4A8Q9BY19 250 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 DUSP21Q9H596 190 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 DDX31Q9H8H2 851 aaKnown RBP2.18□□□□□ -2.06
VPS54-202ENST00000354504 SYTL2Q9HCH5 934 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 IL1RAPQ9NPH3 570 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 ASAH2Q9NR71 780 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 KCTD5Q9NXV2 234 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 GDE1Q9NZC3 331 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 NDUFAF4Q9P032 175 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 APPL1Q9UKG1 709 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 OAZ3Q9UMX2 235 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 MYRFQ9Y2G1 1151 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 NDUFAF1Q9Y375 327 aa2.18□□□□□ -2.06
VPS54-202ENST00000354504 TACC2O95359 2948 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 CHD3Q12873 2000 aaKnown RBP2.17□□□□□ -2.06
VPS54-202ENST00000354504 A0A1W2PR77 199 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 KANSL1LA0AUZ9 987 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 FAM149AA5PLN7 773 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 C9orf118A6NHY6 69 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 FAM171A2A8MVW0 826 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 H0YHG0 523 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 HMGN4O00479 90 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 P2RX6O15547 441 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 PCDH7O60245 1069 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 NEBLO76041 1014 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 HPRP00739 348 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 EGFP01133 1207 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 WNT1P04628 370 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 C1QTNF9P0C862 333 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 IL9P15248 144 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 CSRP1P21291 193 aaKnown RBP2.17□□□□□ -2.06
VPS54-202ENST00000354504 SAT1P21673 171 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 CBLP22681 906 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 DCTP40126 519 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 XCR1P46094 333 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 TBPL1P62380 186 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 SLC35A2P78381 396 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 RAD51Q06609 339 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 SEC23BQ15437 767 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 ZRSR2Q15696 482 aaKnown RBP2.17□□□□□ -2.06
VPS54-202ENST00000354504 LIN52Q52LA3 116 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 ZNF362Q5T0B9 420 aaPredicted RBP2.17□□□□□ -2.06
VPS54-202ENST00000354504 SPOUT1Q5T280 376 aaKnown RBP2.17□□□□□ -2.06
VPS54-202ENST00000354504 FRMPD2BQ6IN97 320 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 PSRC1Q6PGN9 363 aaPredicted RBP2.17□□□□□ -2.06
VPS54-202ENST00000354504 LCTLQ6UWM7 567 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 NHLRC1Q6VVB1 395 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 GALNT10Q86SR1 603 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 ZNF761Q86XN6 746 aaPredicted RBP2.17□□□□□ -2.06
VPS54-202ENST00000354504 MAML2Q8IZL2 1156 aaPredicted RBP2.17□□□□□ -2.06
VPS54-202ENST00000354504 OR56A4Q8NGH8 313 aa2.17□□□□□ -2.06
VPS54-202ENST00000354504 MRPL38Q96DV4 380 aaKnown RBP2.17□□□□□ -2.06
VPS54-202ENST00000354504 ITCHQ96J02 903 aa2.17□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms