RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 TAAR9Q96RI9 348 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 BATF3Q9NR55 127 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 G3V2L1 256 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 ARPC2O15144 300 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 CREG1O75629 220 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 RETP07949 1114 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 THRBP10828 461 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 NME1P15531 152 aaKnown RBP9.63□□□□□ -0.87
USP54-201ENST00000339859 HSD11B1P28845 292 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 GPNMBQ14956 572 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 TMEM71Q6P5X7 295 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 POLR2J3Q9H1A7 115 aaKnown RBP9.63□□□□□ -0.87
USP54-201ENST00000339859 GIMAP2Q9UG22 337 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 MRPS2Q9Y399 296 aaKnown RBP9.63□□□□□ -0.87
USP54-201ENST00000339859 PCDHGB1Q9Y5G3 927 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 LMO7DNF2Z398 122 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 PABPC4LP0CB38 370 aaKnown RBP9.63□□□□□ -0.87
USP54-201ENST00000339859 COL9A1P20849 921 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 AVPR2P30518 371 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 SSR4P51571 173 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 UBAP2Q5T6F2 1119 aaKnown RBP9.63□□□□□ -0.87
USP54-201ENST00000339859 IER5LQ5T953 404 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 GPR153Q6NV75 609 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 OR9A2Q8NGT5 310 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 ASB9Q96DX5 294 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 HSH2DQ96JZ2 352 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 LRRC61Q9BV99 259 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 S1PR5Q9H228 398 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 RNASET2O00584 256 aaKnown RBP9.63□□□□□ -0.87
USP54-201ENST00000339859 CSO75390 466 aaKnown RBP9.63□□□□□ -0.87
USP54-201ENST00000339859 HOXD12P35452 270 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 PEX19P40855 299 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 CDK9P50750 372 aaKnown RBP9.63□□□□□ -0.87
USP54-201ENST00000339859 MERTKQ12866 999 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 CRB2Q5IJ48 1285 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 ZNF619Q8N2I2 560 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 SFRP1Q8N474 314 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 RBP7Q96R05 134 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 P2RY12Q9H244 342 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 MTHFD2LQ9H903 347 aaPredicted RBP9.63□□□□□ -0.87
USP54-201ENST00000339859 GEMIN8Q9NWZ8 242 aaKnown RBP9.63□□□□□ -0.87
USP54-201ENST00000339859 ACAD8Q9UKU7 415 aa9.63□□□□□ -0.87
USP54-201ENST00000339859 SLC5A10A0PJK1 596 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 ANHXE9PGG2 379 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 AOC1P19801 751 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 DLSTP36957 453 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 MAGEA3P43357 314 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 CAPZBP47756 277 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 PLP2Q04941 152 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 PTGR1Q14914 329 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 GPR19Q15760 415 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 THAP5Q7Z6K1 395 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 FITM2Q8N6M3 262 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 TMEM178AQ8NBL3 297 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 TP53I13Q8NBR0 393 aaPredicted RBP9.62□□□□□ -0.87
USP54-201ENST00000339859 PROKR1Q8TCW9 393 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 ECHDC3Q96DC8 303 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 GSTO2Q9H4Y5 243 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 NT5DC2Q9H857 520 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 SP140LQ9H930 580 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 BTNL2Q9UIR0 455 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 ERVK-19Q9WJR5 959 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 POFUT2Q9Y2G5 429 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 LILRA5A6NI73 299 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 PRR23D1E9PI22 279 aaPredicted RBP9.62□□□□□ -0.87
USP54-201ENST00000339859 SOX1O00570 391 aaPredicted RBP9.62□□□□□ -0.87
USP54-201ENST00000339859 PRR23D2P0DMB1 279 aaPredicted RBP9.62□□□□□ -0.87
USP54-201ENST00000339859 BMP1P13497 986 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 ABOP16442 354 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 DIO3P55073 304 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 DEFB124Q8NES8 71 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 NEK7Q8TDX7 302 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 GPER1Q99527 375 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 PCDHGA5Q9Y5G8 931 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 PIAS2O75928 621 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 CPMP14384 443 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 GDF1P27539 372 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 GNALP38405 381 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 TSFMP43897 325 aaKnown RBP9.62□□□□□ -0.87
USP54-201ENST00000339859 TCEAL6Q6IPX3 200 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 ENPP6Q6UWR7 440 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 CYP4V2Q6ZWL3 525 aaPredicted RBP9.62□□□□□ -0.87
USP54-201ENST00000339859 OR52R1Q8NGF1 315 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 LOXL4Q96JB6 756 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 LINC00615Q96LM1 132 aaPredicted RBP9.62□□□□□ -0.87
USP54-201ENST00000339859 ORAI3Q9BRQ5 295 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 PRDM9Q9NQV7 894 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 HCN1O60741 890 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 ABCB7O75027 752 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 GPR75O95800 540 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 KCNC4Q03721 635 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 FIGNL1Q6PIW4 674 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 CHID1Q9BWS9 393 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 ZNF395Q9H8N7 513 aaPredicted RBP9.62□□□□□ -0.87
USP54-201ENST00000339859 CLK4Q9HAZ1 481 aaKnown RBP9.62□□□□□ -0.87
USP54-201ENST00000339859 PCDHGB5Q9Y5G0 923 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 RNF215Q9Y6U7 377 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 ANKRD28O15084 1053 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 ECHS1P30084 290 aa9.62□□□□□ -0.87
USP54-201ENST00000339859 ACADVLP49748 655 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms