RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 GRIK2Q13002 908 aa16.5■□□□□ 0.23
SHANK1-201ENST00000293441 UGT3A2Q3SY77 523 aa16.5■□□□□ 0.23
SHANK1-201ENST00000293441 ALDH16A1Q8IZ83 802 aa16.5■□□□□ 0.23
SHANK1-201ENST00000293441 HBQ1P09105 142 aa16.5■□□□□ 0.23
SHANK1-201ENST00000293441 TCTE1Q5JU00 501 aa16.5■□□□□ 0.23
SHANK1-201ENST00000293441 PDSS2Q86YH6 399 aa16.5■□□□□ 0.23
SHANK1-201ENST00000293441 CASTOR1Q8WTX7 329 aa16.5■□□□□ 0.23
SHANK1-201ENST00000293441 ZNF471Q9BX82 626 aaPredicted RBP16.5■□□□□ 0.23
SHANK1-201ENST00000293441 MKLN1Q9UL63 735 aa16.5■□□□□ 0.23
SHANK1-201ENST00000293441 ZNF451Q9Y4E5 1061 aa16.5■□□□□ 0.23
SHANK1-201ENST00000293441 COL2A1P02458 1487 aaPredicted RBP16.49■□□□□ 0.23
SHANK1-201ENST00000293441 TCEAL8Q8IYN2 117 aa16.49■□□□□ 0.23
SHANK1-201ENST00000293441 CNIH3Q8TBE1 160 aa16.49■□□□□ 0.23
SHANK1-201ENST00000293441 ELP5Q8TE02 316 aa16.49■□□□□ 0.23
SHANK1-201ENST00000293441 ADAMTS18Q8TE60 1221 aa16.49■□□□□ 0.23
SHANK1-201ENST00000293441 RGPD5Q99666 1765 aa16.49■□□□□ 0.23
SHANK1-201ENST00000293441 MYH10P35580 1976 aa16.49■□□□□ 0.23
SHANK1-201ENST00000293441 ZNF35P13682 527 aa16.49■□□□□ 0.23
SHANK1-201ENST00000293441 ZNF12P17014 697 aa16.49■□□□□ 0.23
SHANK1-201ENST00000293441 MALLQ13021 153 aa16.49■□□□□ 0.23
SHANK1-201ENST00000293441 NR0B2Q15466 257 aa16.49■□□□□ 0.23
SHANK1-201ENST00000293441 PITX2Q99697 317 aa16.49■□□□□ 0.23
SHANK1-201ENST00000293441 ZNF559Q9BR84 538 aa16.49■□□□□ 0.23
SHANK1-201ENST00000293441 ZNF700Q9H0M5 742 aa16.49■□□□□ 0.23
SHANK1-201ENST00000293441 NUFIP1Q9UHK0 495 aaKnown RBP16.49■□□□□ 0.23
SHANK1-201ENST00000293441 OR6C70A6NIJ9 312 aa16.49■□□□□ 0.23
SHANK1-201ENST00000293441 IRF2P14316 349 aa16.49■□□□□ 0.23
SHANK1-201ENST00000293441 ARSFP54793 590 aa16.49■□□□□ 0.23
SHANK1-201ENST00000293441 FXYD6P3P58550 94 aa16.49■□□□□ 0.23
SHANK1-201ENST00000293441 SLC36A3Q495N2 470 aa16.49■□□□□ 0.23
SHANK1-201ENST00000293441 SFT2D3Q587I9 215 aa16.49■□□□□ 0.23
SHANK1-201ENST00000293441 DENND6BQ8NEG7 585 aa16.49■□□□□ 0.23
SHANK1-201ENST00000293441 AIG1Q9NVV5 245 aa16.49■□□□□ 0.23
SHANK1-201ENST00000293441 ZNF888P0CJ79 500 aaPredicted RBP16.49■□□□□ 0.23
SHANK1-201ENST00000293441 RPL19P84098 196 aaKnown RBP16.49■□□□□ 0.23
SHANK1-201ENST00000293441 RPL13AP3Q6NVV1 102 aa16.49■□□□□ 0.23
SHANK1-201ENST00000293441 DDIT4LQ96D03 193 aa16.49■□□□□ 0.23
SHANK1-201ENST00000293441 STARD5Q9NSY2 213 aa16.49■□□□□ 0.23
SHANK1-201ENST00000293441 DNAJC25-GNG10A0A024R161 153 aa16.49■□□□□ 0.23
SHANK1-201ENST00000293441 NPIPB15A6NHN6 443 aaPredicted RBP16.49■□□□□ 0.23
SHANK1-201ENST00000293441 H3BSA7 217 aa16.49■□□□□ 0.23
SHANK1-201ENST00000293441 TREML1Q86YW5 311 aa16.49■□□□□ 0.23
SHANK1-201ENST00000293441 ZFYVE21Q9BQ24 234 aa16.49■□□□□ 0.23
SHANK1-201ENST00000293441 CCDC106Q9BWC9 280 aa16.49■□□□□ 0.23
SHANK1-201ENST00000293441 GNRHRP30968 328 aa16.48■□□□□ 0.23
SHANK1-201ENST00000293441 TMEM135Q86UB9 458 aa16.48■□□□□ 0.23
SHANK1-201ENST00000293441 CLECL1Q8IZS7 167 aa16.48■□□□□ 0.23
SHANK1-201ENST00000293441 ZNF675Q8TD23 568 aa16.48■□□□□ 0.23
SHANK1-201ENST00000293441 CCNL2Q96S94 520 aaPredicted RBP16.48■□□□□ 0.23
SHANK1-201ENST00000293441 EEDO75530 441 aaKnown RBP16.48■□□□□ 0.23
SHANK1-201ENST00000293441 RAD51DO75771 328 aa16.48■□□□□ 0.23
SHANK1-201ENST00000293441 ATE1O95260 518 aa16.48■□□□□ 0.23
SHANK1-201ENST00000293441 GCGRP47871 477 aa16.48■□□□□ 0.23
SHANK1-201ENST00000293441 E2F1Q01094 437 aa16.48■□□□□ 0.23
SHANK1-201ENST00000293441 BTBD16Q32M84 506 aa16.48■□□□□ 0.23
SHANK1-201ENST00000293441 KIAA0895LQ68EN5 471 aa16.48■□□□□ 0.23
SHANK1-201ENST00000293441 C3orf33Q6P1S2 294 aa16.48■□□□□ 0.23
SHANK1-201ENST00000293441 RELL1Q8IUW5 271 aa16.48■□□□□ 0.23
SHANK1-201ENST00000293441 ZNF350Q9GZX5 532 aa16.48■□□□□ 0.23
SHANK1-201ENST00000293441 RXFP3Q9NSD7 469 aa16.48■□□□□ 0.23
SHANK1-201ENST00000293441 NUDT15Q9NV35 164 aa16.48■□□□□ 0.23
SHANK1-201ENST00000293441 C5AR2Q9P296 337 aa16.48■□□□□ 0.23
SHANK1-201ENST00000293441 CLEC4EQ9ULY5 219 aa16.48■□□□□ 0.23
SHANK1-201ENST00000293441 PCDHGB6Q9Y5F9 930 aa16.48■□□□□ 0.23
SHANK1-201ENST00000293441 ALG5Q9Y673 324 aa16.48■□□□□ 0.23
SHANK1-201ENST00000293441 KCNJ13O60928 360 aa16.48■□□□□ 0.23
SHANK1-201ENST00000293441 PEPDP12955 493 aa16.48■□□□□ 0.23
SHANK1-201ENST00000293441 ETFAP13804 333 aa16.48■□□□□ 0.23
SHANK1-201ENST00000293441 CELP19835 753 aa16.48■□□□□ 0.23
SHANK1-201ENST00000293441 UBE2NP61088 152 aaKnown RBP16.48■□□□□ 0.23
SHANK1-201ENST00000293441 LARP4Q71RC2 724 aaKnown RBP eCLIP16.48■□□□□ 0.23
SHANK1-201ENST00000293441 LIX1LQ8IVB5 337 aa16.48■□□□□ 0.23
SHANK1-201ENST00000293441 SLC39A11Q8N1S5 342 aa16.48■□□□□ 0.23
SHANK1-201ENST00000293441 PROKR1Q8TCW9 393 aa16.48■□□□□ 0.23
SHANK1-201ENST00000293441 HS6ST2Q96MM7 605 aa16.48■□□□□ 0.23
SHANK1-201ENST00000293441 LPAR4Q99677 370 aa16.48■□□□□ 0.23
SHANK1-201ENST00000293441 BEX2Q9BXY8 128 aa16.48■□□□□ 0.23
SHANK1-201ENST00000293441 BEX1Q9HBH7 125 aa16.48■□□□□ 0.23
SHANK1-201ENST00000293441 NANSQ9NR45 359 aa16.48■□□□□ 0.23
SHANK1-201ENST00000293441 ENAMQ9NRM1 1142 aa16.48■□□□□ 0.23
SHANK1-201ENST00000293441 ANKMY1Q9P2S6 941 aa16.48■□□□□ 0.23
SHANK1-201ENST00000293441 PRAMEF26H0Y7S4 382 aa16.48■□□□□ 0.23
SHANK1-201ENST00000293441 CHRFAM7AQ494W8 412 aa16.48■□□□□ 0.23
SHANK1-201ENST00000293441 HSD17B12Q53GQ0 312 aa16.48■□□□□ 0.23
SHANK1-201ENST00000293441 ABHD17BQ5VST6 288 aa16.48■□□□□ 0.23
SHANK1-201ENST00000293441 LIPKQ5VXJ0 399 aa16.48■□□□□ 0.23
SHANK1-201ENST00000293441 C4BP0C0L5 1744 aa16.48■□□□□ 0.23
SHANK1-201ENST00000293441 SLC16A8O95907 504 aa16.48■□□□□ 0.23
SHANK1-201ENST00000293441 CFL1P23528 166 aaKnown RBP16.48■□□□□ 0.23
SHANK1-201ENST00000293441 NDUFAF5Q5TEU4 345 aa16.48■□□□□ 0.23
SHANK1-201ENST00000293441 ABCB7O75027 752 aa16.47■□□□□ 0.23
SHANK1-201ENST00000293441 ZNF440Q8IYI8 595 aa16.47■□□□□ 0.23
SHANK1-201ENST00000293441 FCAMRQ8WWV6 532 aa16.47■□□□□ 0.23
SHANK1-201ENST00000293441 GATAD2BQ8WXI9 593 aa16.47■□□□□ 0.23
SHANK1-201ENST00000293441 THRSPQ92748 146 aa16.47■□□□□ 0.23
SHANK1-201ENST00000293441 TOE1Q96GM8 510 aaKnown RBP16.47■□□□□ 0.23
SHANK1-201ENST00000293441 EHD1Q9H4M9 534 aa16.47■□□□□ 0.23
SHANK1-201ENST00000293441 H0YJX3 145 aa16.47■□□□□ 0.23
SHANK1-201ENST00000293441 ARF3P61204 181 aaPredicted RBP16.47■□□□□ 0.23
SHANK1-201ENST00000293441 ARF1P84077 181 aaKnown RBP16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms