RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 TRMT61AQ96FX7 289 aaKnown RBP17.72■□□□□ 0.43
CPSF3-201ENST00000238112 FUZQ9BT04 418 aa17.72■□□□□ 0.43
CPSF3-201ENST00000238112 PCBD2Q9H0N5 130 aa17.72■□□□□ 0.43
CPSF3-201ENST00000238112 SERHL2Q9H4I8 314 aa17.72■□□□□ 0.43
CPSF3-201ENST00000238112 ACSS1Q9NUB1 689 aaPredicted RBP17.72■□□□□ 0.43
CPSF3-201ENST00000238112 TEX10Q9NXF1 929 aaPredicted RBP17.72■□□□□ 0.43
CPSF3-201ENST00000238112 PCDH10Q9P2E7 1040 aa17.72■□□□□ 0.43
CPSF3-201ENST00000238112 EDDM13A0A1B0GTR0 161 aa17.71■□□□□ 0.43
CPSF3-201ENST00000238112 A0A1W2PRQ8 180 aa17.71■□□□□ 0.43
CPSF3-201ENST00000238112 PRKYO43930 277 aa17.71■□□□□ 0.43
CPSF3-201ENST00000238112 ADH1CP00326 375 aa17.71■□□□□ 0.43
CPSF3-201ENST00000238112 LINC00271P0C7V0 271 aa17.71■□□□□ 0.43
CPSF3-201ENST00000238112 ERGP11308 486 aa17.71■□□□□ 0.43
CPSF3-201ENST00000238112 PSMB5P28074 263 aa17.71■□□□□ 0.43
CPSF3-201ENST00000238112 HSD17B2P37059 387 aa17.71■□□□□ 0.43
CPSF3-201ENST00000238112 COX10Q12887 443 aa17.71■□□□□ 0.43
CPSF3-201ENST00000238112 NDUFA9Q16795 377 aa17.71■□□□□ 0.43
CPSF3-201ENST00000238112 HNRNPA1L2Q32P51 320 aaKnown RBP17.71■□□□□ 0.43
CPSF3-201ENST00000238112 PAQR6Q6TCH4 344 aa17.71■□□□□ 0.43
CPSF3-201ENST00000238112 LAX1Q8IWV1 398 aa17.71■□□□□ 0.43
CPSF3-201ENST00000238112 PHC2Q8IXK0 858 aa17.71■□□□□ 0.43
CPSF3-201ENST00000238112 OR5D16Q8NGK9 328 aa17.71■□□□□ 0.43
CPSF3-201ENST00000238112 CXorf40AQ8TE69 158 aa17.71■□□□□ 0.43
CPSF3-201ENST00000238112 ZNF486Q96H40 463 aaPredicted RBP17.71■□□□□ 0.43
CPSF3-201ENST00000238112 POLDIP3Q9BY77 421 aaKnown RBP17.71■□□□□ 0.43
CPSF3-201ENST00000238112 TPK1Q9H3S4 243 aa17.71■□□□□ 0.43
CPSF3-201ENST00000238112 NEK6Q9HC98 313 aa17.71■□□□□ 0.43
CPSF3-201ENST00000238112 LHX9Q9NQ69 397 aa17.71■□□□□ 0.43
CPSF3-201ENST00000238112 SLC9A8Q9Y2E8 581 aa17.71■□□□□ 0.43
CPSF3-201ENST00000238112 V9GYH0 126 aa17.71■□□□□ 0.43
CPSF3-201ENST00000238112 KIAA1549LQ6ZVL6 1849 aa17.71■□□□□ 0.43
CPSF3-201ENST00000238112 LAMA2P24043 3122 aaKnown RBP17.71■□□□□ 0.43
CPSF3-201ENST00000238112 KIF26AQ9ULI4 1882 aaPredicted RBP17.71■□□□□ 0.43
CPSF3-201ENST00000238112 PRRT4C9JH25 899 aa17.71■□□□□ 0.43
CPSF3-201ENST00000238112 OR1F1O43749 312 aa17.71■□□□□ 0.43
CPSF3-201ENST00000238112 RAB36O95755 333 aa17.71■□□□□ 0.43
CPSF3-201ENST00000238112 ITGB8P26012 769 aa17.71■□□□□ 0.43
CPSF3-201ENST00000238112 ELAVL3Q14576 367 aaKnown RBP17.71■□□□□ 0.43
CPSF3-201ENST00000238112 GRASPQ7Z6J2 395 aaPredicted RBP17.71■□□□□ 0.43
CPSF3-201ENST00000238112 NRARPQ7Z6K4 114 aa17.71■□□□□ 0.43
CPSF3-201ENST00000238112 FAM26EQ8N5C1 309 aa17.71■□□□□ 0.43
CPSF3-201ENST00000238112 TBC1D19Q8N5T2 526 aa17.71■□□□□ 0.43
CPSF3-201ENST00000238112 MRPL43Q8N983 215 aaKnown RBP17.71■□□□□ 0.43
CPSF3-201ENST00000238112 SLC23A2Q9UGH3 650 aa17.71■□□□□ 0.43
CPSF3-201ENST00000238112 DIMT1Q9UNQ2 313 aaKnown RBP17.71■□□□□ 0.43
CPSF3-201ENST00000238112 IRAK3Q9Y616 596 aa17.71■□□□□ 0.43
CPSF3-201ENST00000238112 NINQ8N4C6 2090 aa17.7■□□□□ 0.42
CPSF3-201ENST00000238112 TP53P04637 393 aaPredicted RBP17.7■□□□□ 0.42
CPSF3-201ENST00000238112 COPZ1P61923 177 aa17.7■□□□□ 0.42
CPSF3-201ENST00000238112 PSPHP78330 225 aa17.7■□□□□ 0.42
CPSF3-201ENST00000238112 MESP2Q0VG99 397 aa17.7■□□□□ 0.42
CPSF3-201ENST00000238112 GINS1Q14691 196 aa17.7■□□□□ 0.42
CPSF3-201ENST00000238112 SF3B4Q15427 424 aaKnown RBP eCLIP17.7■□□□□ 0.42
CPSF3-201ENST00000238112 ERN2Q76MJ5 926 aaKnown RBP17.7■□□□□ 0.42
CPSF3-201ENST00000238112 PLA2G15Q8NCC3 412 aa17.7■□□□□ 0.42
CPSF3-201ENST00000238112 OR4K5Q8NGD3 323 aa17.7■□□□□ 0.42
CPSF3-201ENST00000238112 ZNF764Q96H86 408 aaPredicted RBP17.7■□□□□ 0.42
CPSF3-201ENST00000238112 LRR1Q96L50 414 aa17.7■□□□□ 0.42
CPSF3-201ENST00000238112 WDFY2Q96P53 400 aa17.7■□□□□ 0.42
CPSF3-201ENST00000238112 ZNF221Q9UK13 617 aa17.7■□□□□ 0.42
CPSF3-201ENST00000238112 SLC27A6Q9Y2P4 619 aa17.7■□□□□ 0.42
CPSF3-201ENST00000238112 GRIP1Q9Y3R0 1128 aa17.7■□□□□ 0.42
CPSF3-201ENST00000238112 CMAHPQ9Y471 501 aa17.7■□□□□ 0.42
CPSF3-201ENST00000238112 PLXND1Q9Y4D7 1925 aa17.7■□□□□ 0.42
CPSF3-201ENST00000238112 IQCMA0A1B0GVH7 501 aa17.7■□□□□ 0.42
CPSF3-201ENST00000238112 SERPIND1P05546 499 aa17.7■□□□□ 0.42
CPSF3-201ENST00000238112 CEBPBP17676 345 aa17.7■□□□□ 0.42
CPSF3-201ENST00000238112 MMP11P24347 488 aa17.7■□□□□ 0.42
CPSF3-201ENST00000238112 AZGP1P25311 298 aaKnown RBP17.7■□□□□ 0.42
CPSF3-201ENST00000238112 MXD1Q05195 221 aa17.7■□□□□ 0.42
CPSF3-201ENST00000238112 TMEM52BQ4KMG9 183 aa17.7■□□□□ 0.42
CPSF3-201ENST00000238112 ZMAT1Q5H9K5 638 aa17.7■□□□□ 0.42
CPSF3-201ENST00000238112 ADCK2Q7Z695 626 aa17.7■□□□□ 0.42
CPSF3-201ENST00000238112 LRRTM4Q86VH4 590 aa17.7■□□□□ 0.42
CPSF3-201ENST00000238112 LINC00471Q8N535 108 aa17.7■□□□□ 0.42
CPSF3-201ENST00000238112 GALNT6Q8NCL4 622 aa17.7■□□□□ 0.42
CPSF3-201ENST00000238112 OR52I1Q8NGK6 324 aa17.7■□□□□ 0.42
CPSF3-201ENST00000238112 ZCCHC3Q9NUD5 404 aaKnown RBP17.7■□□□□ 0.42
CPSF3-201ENST00000238112 ZSCAN32Q9NX65 697 aa17.7■□□□□ 0.42
CPSF3-201ENST00000238112 MUTYHQ9UIF7 546 aa17.7■□□□□ 0.42
CPSF3-201ENST00000238112 ADAM29Q9UKF5 820 aa17.7■□□□□ 0.42
CPSF3-201ENST00000238112 PCDHGB2Q9Y5G2 931 aa17.7■□□□□ 0.42
CPSF3-201ENST00000238112 LRRK1Q38SD2 2015 aa17.7■□□□□ 0.42
CPSF3-201ENST00000238112 A0A0G2JN53 185 aa17.69■□□□□ 0.42
CPSF3-201ENST00000238112 PRAMEF27A3QJZ7 478 aa17.69■□□□□ 0.42
CPSF3-201ENST00000238112 HOXC11O43248 304 aaPredicted RBP17.69■□□□□ 0.42
CPSF3-201ENST00000238112 CDRT1O95170 752 aa17.69■□□□□ 0.42
CPSF3-201ENST00000238112 MNX1P50219 401 aaPredicted RBP17.69■□□□□ 0.42
CPSF3-201ENST00000238112 LARS2Q15031 903 aaKnown RBP17.69■□□□□ 0.42
CPSF3-201ENST00000238112 MLC1Q15049 377 aa17.69■□□□□ 0.42
CPSF3-201ENST00000238112 SYT14P1Q58G82 188 aa17.69■□□□□ 0.42
CPSF3-201ENST00000238112 C1orf53Q5VUE5 145 aa17.69■□□□□ 0.42
CPSF3-201ENST00000238112 FAM46CQ5VWP2 391 aa17.69■□□□□ 0.42
CPSF3-201ENST00000238112 CD300LDQ6UXZ3 194 aa17.69■□□□□ 0.42
CPSF3-201ENST00000238112 ZNF517Q6ZMY9 492 aaPredicted RBP17.69■□□□□ 0.42
CPSF3-201ENST00000238112 IQCHQ86VS3 1027 aa17.69■□□□□ 0.42
CPSF3-201ENST00000238112 COMTD1Q86VU5 262 aa17.69■□□□□ 0.42
CPSF3-201ENST00000238112 UBQLNLQ8IYU4 475 aa17.69■□□□□ 0.42
CPSF3-201ENST00000238112 SLC7A5P1Q8MH63 180 aa17.69■□□□□ 0.42
CPSF3-201ENST00000238112 UCN3Q969E3 161 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms