RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 CWC25Q9NXE8 425 aaPredicted RBP5.37□□□□□ -1.55
SCN1A-220ENST00000641603 PIK3C2GO75747 1445 aa5.37□□□□□ -1.55
SCN1A-220ENST00000641603 EFCAB8A8MWE9 144 aa5.37□□□□□ -1.55
SCN1A-220ENST00000641603 MAGEA9P43362 315 aa5.37□□□□□ -1.55
SCN1A-220ENST00000641603 VAV2P52735 878 aa5.37□□□□□ -1.55
SCN1A-220ENST00000641603 TTF2Q9UNY4 1162 aaKnown RBP5.37□□□□□ -1.55
SCN1A-220ENST00000641603 NPC1L1Q9UHC9 1359 aa5.37□□□□□ -1.55
SCN1A-220ENST00000641603 ATP11AP98196 1134 aa5.37□□□□□ -1.55
SCN1A-220ENST00000641603 FKBP5Q13451 457 aaPredicted RBP5.37□□□□□ -1.55
SCN1A-220ENST00000641603 CCDC155Q8N6L0 562 aa5.37□□□□□ -1.55
SCN1A-220ENST00000641603 TRIM7Q9C029 511 aa5.37□□□□□ -1.55
SCN1A-220ENST00000641603 THEGQ9P2T0 379 aa5.37□□□□□ -1.55
SCN1A-220ENST00000641603 JRKLQ9Y4A0 524 aa5.37□□□□□ -1.55
SCN1A-220ENST00000641603 GBP1P32455 592 aa5.37□□□□□ -1.55
SCN1A-220ENST00000641603 PDE6BP35913 854 aa5.37□□□□□ -1.55
SCN1A-220ENST00000641603 NUCB1Q02818 461 aa5.37□□□□□ -1.55
SCN1A-220ENST00000641603 FKBP15Q5T1M5 1219 aa5.37□□□□□ -1.55
SCN1A-220ENST00000641603 CCDC57Q2TAC2 916 aa5.37□□□□□ -1.55
SCN1A-220ENST00000641603 P3H4Q92791 437 aa5.37□□□□□ -1.55
SCN1A-220ENST00000641603 VCX3BQ9H321 246 aa5.37□□□□□ -1.55
SCN1A-220ENST00000641603 VCX3AQ9NNX9 186 aa5.37□□□□□ -1.55
SCN1A-220ENST00000641603 ATP5DP30049 168 aa5.36□□□□□ -1.55
SCN1A-220ENST00000641603 ALDH3A1P30838 453 aa5.36□□□□□ -1.55
SCN1A-220ENST00000641603 ANKRD24Q8TF21 1146 aa5.36□□□□□ -1.55
SCN1A-220ENST00000641603 JAKMIP1Q96N16 626 aaKnown RBP5.36□□□□□ -1.55
SCN1A-220ENST00000641603 PPP1R12BO60237 982 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-220ENST00000641603 DNAJC8O75937 253 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-220ENST00000641603 GLRX3O76003 335 aaKnown RBP5.36□□□□□ -1.55
SCN1A-220ENST00000641603 CEP85LQ5SZL2 805 aa5.36□□□□□ -1.55
SCN1A-220ENST00000641603 CCDC110Q8TBZ0 833 aa5.36□□□□□ -1.55
SCN1A-220ENST00000641603 SH3GL3Q99963 347 aa5.36□□□□□ -1.55
SCN1A-220ENST00000641603 ARHGAP24Q8N264 748 aa5.36□□□□□ -1.55
SCN1A-220ENST00000641603 C9orf78Q9NZ63 289 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-220ENST00000641603 SAMD15Q9P1V8 674 aa5.36□□□□□ -1.55
SCN1A-220ENST00000641603 NDC80O14777 642 aa5.36□□□□□ -1.55
SCN1A-220ENST00000641603 KRT86O43790 486 aa5.36□□□□□ -1.55
SCN1A-220ENST00000641603 CDC25BP30305 580 aa5.36□□□□□ -1.55
SCN1A-220ENST00000641603 CYLC1P35663 651 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-220ENST00000641603 GNG11P61952 73 aa5.36□□□□□ -1.55
SCN1A-220ENST00000641603 MTMR3Q13615 1198 aa5.36□□□□□ -1.55
SCN1A-220ENST00000641603 PLVAPQ9BX97 442 aa5.36□□□□□ -1.55
SCN1A-220ENST00000641603 TSGA10Q9BZW7 698 aa5.36□□□□□ -1.55
SCN1A-220ENST00000641603 ITGB1BP2Q9UKP3 347 aa5.36□□□□□ -1.55
SCN1A-220ENST00000641603 SETDB1Q15047 1291 aa5.36□□□□□ -1.55
SCN1A-220ENST00000641603 CCDC186Q7Z3E2 898 aa5.36□□□□□ -1.55
SCN1A-220ENST00000641603 KDM2BQ8NHM5 1336 aa5.36□□□□□ -1.55
SCN1A-220ENST00000641603 RUFY4Q6ZNE9 571 aa5.36□□□□□ -1.55
SCN1A-220ENST00000641603 GFM2Q969S9 779 aaKnown RBP5.36□□□□□ -1.55
SCN1A-220ENST00000641603 FEZ2Q9UHY8 353 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-220ENST00000641603 IQSEC3Q9UPP2 1182 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-220ENST00000641603 PSDA5PKW4 1024 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-220ENST00000641603 HSP90AA5PQ58FG0 334 aa5.36□□□□□ -1.55
SCN1A-220ENST00000641603 ACTR5Q9H9F9 607 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-220ENST00000641603 PPP1R2P41236 205 aa5.36□□□□□ -1.55
SCN1A-220ENST00000641603 CDCA7LQ96GN5 454 aa5.36□□□□□ -1.55
SCN1A-220ENST00000641603 EIF2AK4Q9P2K8 1649 aaKnown RBP5.36□□□□□ -1.55
SCN1A-220ENST00000641603 MARCH6O60337 910 aa5.36□□□□□ -1.55
SCN1A-220ENST00000641603 CNGA4Q8IV77 575 aa5.36□□□□□ -1.55
SCN1A-220ENST00000641603 CCDC65Q8IXS2 484 aa5.36□□□□□ -1.55
SCN1A-220ENST00000641603 MRFAP1L1Q96HT8 127 aa5.36□□□□□ -1.55
SCN1A-220ENST00000641603 RASAL2Q9UJF2 1139 aa5.36□□□□□ -1.55
SCN1A-220ENST00000641603 TSKSQ9UJT2 592 aa5.36□□□□□ -1.55
SCN1A-220ENST00000641603 PDS5BQ9NTI5 1447 aa5.36□□□□□ -1.55
SCN1A-220ENST00000641603 SSH2Q76I76 1423 aa5.36□□□□□ -1.55
SCN1A-220ENST00000641603 ARHGAP6O43182 974 aa5.36□□□□□ -1.55
SCN1A-220ENST00000641603 ACTN2P35609 894 aa5.36□□□□□ -1.55
SCN1A-220ENST00000641603 DYNC1I2Q13409 638 aaKnown RBP5.36□□□□□ -1.55
SCN1A-220ENST00000641603 BCL2L12Q9HB09 334 aa5.36□□□□□ -1.55
SCN1A-220ENST00000641603 FCHSD2O94868 740 aa5.35□□□□□ -1.55
SCN1A-220ENST00000641603 DBN1Q16643 649 aa5.35□□□□□ -1.55
SCN1A-220ENST00000641603 RPUSD2Q8IZ73 545 aaKnown RBP5.35□□□□□ -1.55
SCN1A-220ENST00000641603 RRP15Q9Y3B9 282 aaKnown RBP5.35□□□□□ -1.55
SCN1A-220ENST00000641603 RIOK3O14730 519 aaKnown RBP5.35□□□□□ -1.55
SCN1A-220ENST00000641603 RASSF2P50749 326 aa5.35□□□□□ -1.55
SCN1A-220ENST00000641603 CEP57Q86XR8 500 aa5.35□□□□□ -1.55
SCN1A-220ENST00000641603 COG3Q96JB2 828 aa5.35□□□□□ -1.55
SCN1A-220ENST00000641603 CABS1Q96KC9 395 aa5.35□□□□□ -1.55
SCN1A-220ENST00000641603 RMND1Q9NWS8 449 aa5.35□□□□□ -1.55
SCN1A-220ENST00000641603 VPS18Q9P253 973 aa5.35□□□□□ -1.55
SCN1A-220ENST00000641603 DUSP27Q5VZP5 1158 aa5.35□□□□□ -1.55
SCN1A-220ENST00000641603 PHLDB2Q86SQ0 1253 aa5.35□□□□□ -1.55
SCN1A-220ENST00000641603 BCL2L13Q9BXK5 485 aa5.35□□□□□ -1.55
SCN1A-220ENST00000641603 TULP1O00294 542 aaPredicted RBP5.35□□□□□ -1.55
SCN1A-220ENST00000641603 PTPN23Q9H3S7 1636 aa5.35□□□□□ -1.55
SCN1A-220ENST00000641603 HCLS1P14317 486 aaPredicted RBP5.35□□□□□ -1.55
SCN1A-220ENST00000641603 PSMD7P51665 324 aa5.35□□□□□ -1.55
SCN1A-220ENST00000641603 ZSCAN25Q6NSZ9 544 aa5.35□□□□□ -1.55
SCN1A-220ENST00000641603 RABGGTAQ92696 567 aa5.35□□□□□ -1.55
SCN1A-220ENST00000641603 MAPKBP1O60336 1514 aa5.35□□□□□ -1.55
SCN1A-220ENST00000641603 SENP3-EIF4A1A0A087X0R7 540 aa5.35□□□□□ -1.55
SCN1A-220ENST00000641603 TERF2Q15554 542 aa5.35□□□□□ -1.55
SCN1A-220ENST00000641603 PTPRCP08575 1304 aa5.35□□□□□ -1.55
SCN1A-220ENST00000641603 SYNJ1O43426 1573 aa5.35□□□□□ -1.55
SCN1A-220ENST00000641603 SLC3A2P08195 630 aaKnown RBP5.35□□□□□ -1.55
SCN1A-220ENST00000641603 GCKP35557 465 aa5.35□□□□□ -1.55
SCN1A-220ENST00000641603 FOXD4L6Q3SYB3 417 aaPredicted RBP5.35□□□□□ -1.55
SCN1A-220ENST00000641603 FOXD4L3Q6VB84 417 aaPredicted RBP5.35□□□□□ -1.55
SCN1A-220ENST00000641603 CCDC77Q9BR77 488 aa5.35□□□□□ -1.55
SCN1A-220ENST00000641603 PRIM1P49642 420 aaKnown RBP5.35□□□□□ -1.55
SCN1A-220ENST00000641603 SATB1Q01826 763 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms