RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 CACNA1SQ13698 1873 aa22.34■■□□□ 1.17
CLN3-264ENST00000637985 ZNF541Q9H0D2 1346 aa22.33■■□□□ 1.17
CLN3-264ENST00000637985 RNMTO43148 476 aaKnown RBP22.33■■□□□ 1.17
CLN3-264ENST00000637985 MAP1SQ66K74 1059 aaPredicted RBP22.33■■□□□ 1.17
CLN3-264ENST00000637985 PNMA8AQ86V59 439 aaPredicted RBP22.33■■□□□ 1.17
CLN3-264ENST00000637985 MASTLQ96GX5 879 aa22.33■■□□□ 1.17
CLN3-264ENST00000637985 ABT1Q9ULW3 272 aaKnown RBP22.32■■□□□ 1.16
CLN3-264ENST00000637985 SCN7AQ01118 1682 aa22.32■■□□□ 1.16
CLN3-264ENST00000637985 THSD7BQ9C0I4 1608 aa22.31■■□□□ 1.16
CLN3-264ENST00000637985 UBR2Q8IWV8 1755 aa22.31■■□□□ 1.16
CLN3-264ENST00000637985 STARD3NLO95772 234 aa22.31■■□□□ 1.16
CLN3-264ENST00000637985 CNBD1Q8NA66 436 aa22.31■■□□□ 1.16
CLN3-264ENST00000637985 IL13P35225 146 aa22.3■■□□□ 1.16
CLN3-264ENST00000637985 TBC1D2BQ9UPU7 963 aa22.3■■□□□ 1.16
CLN3-264ENST00000637985 CCDC93Q567U6 631 aa22.29■■□□□ 1.16
CLN3-264ENST00000637985 SETDB2Q96T68 719 aa22.29■■□□□ 1.16
CLN3-264ENST00000637985 BEGAINQ9BUH8 593 aa22.28■■□□□ 1.16
CLN3-264ENST00000637985 DDX21Q9NR30 783 aaKnown RBP eCLIP22.28■■□□□ 1.16
CLN3-264ENST00000637985 RNF123Q5XPI4 1314 aa22.28■■□□□ 1.16
CLN3-264ENST00000637985 TNRC18O15417 2968 aaPredicted RBP22.27■■□□□ 1.16
CLN3-264ENST00000637985 ST5P78524 1137 aa22.27■■□□□ 1.16
CLN3-264ENST00000637985 FKBP4Q02790 459 aaKnown RBP eCLIP22.27■■□□□ 1.16
CLN3-264ENST00000637985 CAPNS2Q96L46 248 aa22.27■■□□□ 1.16
CLN3-264ENST00000637985 ZNF277Q9NRM2 450 aaPredicted RBP22.27■■□□□ 1.16
CLN3-264ENST00000637985 FZD9O00144 591 aa22.26■■□□□ 1.15
CLN3-264ENST00000637985 ECE1P42892 770 aa22.26■■□□□ 1.15
CLN3-264ENST00000637985 CCER1Q8TC90 406 aaPredicted RBP22.26■■□□□ 1.15
CLN3-264ENST00000637985 NPHP1O15259 732 aa22.25■■□□□ 1.15
CLN3-264ENST00000637985 IL6STP40189 918 aaPredicted RBP22.25■■□□□ 1.15
CLN3-264ENST00000637985 GPR101Q96P66 508 aaPredicted RBP22.25■■□□□ 1.15
CLN3-264ENST00000637985 CAMTA2O94983 1202 aa22.24■■□□□ 1.15
CLN3-264ENST00000637985 GPC2Q8N158 579 aa22.24■■□□□ 1.15
CLN3-264ENST00000637985 PDE4DIPQ5VU43 2346 aa22.23■■□□□ 1.15
CLN3-264ENST00000637985 CYP4F22Q6NT55 531 aa22.23■■□□□ 1.15
CLN3-264ENST00000637985 ZNF330Q9Y3S2 320 aaPredicted RBP22.23■■□□□ 1.15
CLN3-264ENST00000637985 NPR1P16066 1061 aa22.22■■□□□ 1.15
CLN3-264ENST00000637985 RTKN2Q8IZC4 609 aa22.22■■□□□ 1.15
CLN3-264ENST00000637985 TTC5Q8N0Z6 440 aa22.22■■□□□ 1.15
CLN3-264ENST00000637985 ZNF496Q96IT1 587 aaPredicted RBP22.22■■□□□ 1.15
CLN3-264ENST00000637985 TEX13AQ9BXU3 409 aaPredicted RBP22.22■■□□□ 1.15
CLN3-264ENST00000637985 KLRG2A4D1S0 409 aaPredicted RBP22.21■■□□□ 1.15
CLN3-264ENST00000637985 FMR1Q06787 632 aaKnown RBP eCLIP22.21■■□□□ 1.15
CLN3-264ENST00000637985 MTHFSDQ2M296 383 aaKnown RBP22.21■■□□□ 1.15
CLN3-264ENST00000637985 OLFM4Q6UX06 510 aa22.21■■□□□ 1.15
CLN3-264ENST00000637985 PAXIP1Q6ZW49 1069 aaPredicted RBP22.21■■□□□ 1.15
CLN3-264ENST00000637985 MORC1Q86VD1 984 aa22.21■■□□□ 1.15
CLN3-264ENST00000637985 POLR3GLQ9BT43 218 aa22.21■■□□□ 1.15
CLN3-264ENST00000637985 MCOLN1Q9GZU1 580 aa22.21■■□□□ 1.15
CLN3-264ENST00000637985 TSKSQ9UJT2 592 aa22.21■■□□□ 1.15
CLN3-264ENST00000637985 HEG1Q9ULI3 1381 aa22.21■■□□□ 1.15
CLN3-264ENST00000637985 MAP2K2P36507 400 aa22.2■■□□□ 1.14
CLN3-264ENST00000637985 IARSP41252 1262 aaKnown RBP22.2■■□□□ 1.14
CLN3-264ENST00000637985 CST9Q5W186 159 aa22.2■■□□□ 1.14
CLN3-264ENST00000637985 PANK3Q9H999 370 aa22.2■■□□□ 1.14
CLN3-264ENST00000637985 LTBP1Q14766 1721 aa22.2■■□□□ 1.14
CLN3-264ENST00000637985 GRM1Q13255 1194 aa22.19■■□□□ 1.14
CLN3-264ENST00000637985 CFAP44Q96MT7 982 aa22.19■■□□□ 1.14
CLN3-264ENST00000637985 ZNF790Q6PG37 636 aa22.18■■□□□ 1.14
CLN3-264ENST00000637985 SYNE4Q8N205 404 aa22.18■■□□□ 1.14
CLN3-264ENST00000637985 TLL2Q9Y6L7 1015 aa22.18■■□□□ 1.14
CLN3-264ENST00000637985 TRPM7Q96QT4 1865 aa22.17■■□□□ 1.14
CLN3-264ENST00000637985 BCORQ6W2J9 1755 aa22.17■■□□□ 1.14
CLN3-264ENST00000637985 CA12O43570 354 aa22.17■■□□□ 1.14
CLN3-264ENST00000637985 A1BGP04217 495 aa22.17■■□□□ 1.14
CLN3-264ENST00000637985 HMOX1P09601 288 aa22.17■■□□□ 1.14
CLN3-264ENST00000637985 NBPF5PQ86XG9 351 aaPredicted RBP22.17■■□□□ 1.14
CLN3-264ENST00000637985 CASP8AP2Q9UKL3 1982 aa22.17■■□□□ 1.14
CLN3-264ENST00000637985 AOC2O75106 756 aa22.16■■□□□ 1.14
CLN3-264ENST00000637985 NPM2Q86SE8 214 aaKnown RBP22.16■■□□□ 1.14
CLN3-264ENST00000637985 EIF4G2P78344 907 aaKnown RBP eCLIP22.15■■□□□ 1.14
CLN3-264ENST00000637985 CLEC4GQ6UXB4 293 aa22.15■■□□□ 1.14
CLN3-264ENST00000637985 DZIP3Q86Y13 1208 aaKnown RBP22.15■■□□□ 1.14
CLN3-264ENST00000637985 SNED1Q8TER0 1413 aa22.14■■□□□ 1.14
CLN3-264ENST00000637985 TRAF5O00463 557 aa22.14■■□□□ 1.13
CLN3-264ENST00000637985 JDP2Q8WYK2 163 aa22.14■■□□□ 1.13
CLN3-264ENST00000637985 PSMD1Q99460 953 aa22.14■■□□□ 1.13
CLN3-264ENST00000637985 LMOD1P29536 600 aaPredicted RBP22.13■■□□□ 1.13
CLN3-264ENST00000637985 EPS15P42566 896 aa22.13■■□□□ 1.13
CLN3-264ENST00000637985 SCNN1DP51172 638 aa22.13■■□□□ 1.13
CLN3-264ENST00000637985 GJA3Q9Y6H8 435 aa22.13■■□□□ 1.13
CLN3-264ENST00000637985 USP50Q70EL3 339 aaPredicted RBP22.12■■□□□ 1.13
CLN3-264ENST00000637985 COL4A5P29400 1685 aa22.11■■□□□ 1.13
CLN3-264ENST00000637985 ALDH1B1P30837 517 aa22.11■■□□□ 1.13
CLN3-264ENST00000637985 EIF6P56537 245 aaKnown RBP22.11■■□□□ 1.13
CLN3-264ENST00000637985 DGKZQ13574 1117 aa22.11■■□□□ 1.13
CLN3-264ENST00000637985 TPTE2Q6XPS3 522 aa22.11■■□□□ 1.13
CLN3-264ENST00000637985 SAPCD2Q86UD0 394 aa22.11■■□□□ 1.13
CLN3-264ENST00000637985 IL17REQ8NFR9 667 aa22.11■■□□□ 1.13
CLN3-264ENST00000637985 FMNL2Q96PY5 1086 aa22.11■■□□□ 1.13
CLN3-264ENST00000637985 BRPF1P55201 1214 aaPredicted RBP22.1■■□□□ 1.13
CLN3-264ENST00000637985 TEFQ10587 303 aa22.1■■□□□ 1.13
CLN3-264ENST00000637985 SIPA1L3O60292 1781 aaPredicted RBP22.1■■□□□ 1.13
CLN3-264ENST00000637985 HSPA5P11021 654 aaKnown RBP22.09■■□□□ 1.13
CLN3-264ENST00000637985 HHIPL1Q96JK4 782 aa22.09■■□□□ 1.13
CLN3-264ENST00000637985 ZNF652Q9Y2D9 606 aa22.09■■□□□ 1.13
CLN3-264ENST00000637985 RGL2O15211 777 aa22.06■■□□□ 1.12
CLN3-264ENST00000637985 CC2D2BQ6DHV5 1058 aa22.06■■□□□ 1.12
CLN3-264ENST00000637985 NIP7Q9Y221 180 aaKnown RBP eCLIP22.06■■□□□ 1.12
CLN3-264ENST00000637985 USP16Q9Y5T5 823 aa22.06■■□□□ 1.12
CLN3-264ENST00000637985 PIP4K2AP48426 406 aaPredicted RBP22.05■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms