RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 VEGFAP15692 232 aaPredicted RBP21.47■■□□□ 1.03
CLN3-246ENST00000636228 DLEC1Q9Y238 1755 aa21.46■■□□□ 1.03
CLN3-246ENST00000636228 ANKRD31Q8N7Z5 1873 aa21.46■■□□□ 1.03
CLN3-246ENST00000636228 STYK1Q6J9G0 422 aa21.46■■□□□ 1.03
CLN3-246ENST00000636228 PRPF40BQ6NWY9 871 aaKnown RBP21.46■■□□□ 1.03
CLN3-246ENST00000636228 CLEC4GQ6UXB4 293 aa21.46■■□□□ 1.03
CLN3-246ENST00000636228 NGEFQ8N5V2 710 aa21.46■■□□□ 1.03
CLN3-246ENST00000636228 SMC1BQ8NDV3 1235 aa21.46■■□□□ 1.03
CLN3-246ENST00000636228 CNKSR1Q969H4 720 aa21.46■■□□□ 1.03
CLN3-246ENST00000636228 POTECB2RU33 542 aa21.45■■□□□ 1.02
CLN3-246ENST00000636228 HLFQ16534 295 aa21.45■■□□□ 1.02
CLN3-246ENST00000636228 ERFEQ4G0M1 354 aa21.45■■□□□ 1.02
CLN3-246ENST00000636228 MASTLQ96GX5 879 aa21.45■■□□□ 1.02
CLN3-246ENST00000636228 THUMPD2Q9BTF0 503 aaKnown RBP21.45■■□□□ 1.02
CLN3-246ENST00000636228 NIP7Q9Y221 180 aaKnown RBP eCLIP21.45■■□□□ 1.02
CLN3-246ENST00000636228 ZNF652Q9Y2D9 606 aa21.45■■□□□ 1.02
CLN3-246ENST00000636228 PLEKHF1Q96S99 279 aa21.44■■□□□ 1.02
CLN3-246ENST00000636228 DPY19L2Q6NUT2 758 aa21.43■■□□□ 1.02
CLN3-246ENST00000636228 COL11A2P13942 1736 aaPredicted RBP21.43■■□□□ 1.02
CLN3-246ENST00000636228 NEFMP07197 916 aa21.42■■□□□ 1.02
CLN3-246ENST00000636228 KLRG1Q96E93 195 aa21.42■■□□□ 1.02
CLN3-246ENST00000636228 TAOK3Q9H2K8 898 aa21.42■■□□□ 1.02
CLN3-246ENST00000636228 OLFM4Q6UX06 510 aa21.41■■□□□ 1.02
CLN3-246ENST00000636228 TPTE2Q6XPS3 522 aa21.41■■□□□ 1.02
CLN3-246ENST00000636228 NFE2L2Q16236 605 aa21.4■■□□□ 1.02
CLN3-246ENST00000636228 C7orf43Q8WVR3 580 aa21.4■■□□□ 1.02
CLN3-246ENST00000636228 RRP7AQ9Y3A4 280 aaKnown RBP21.4■■□□□ 1.02
CLN3-246ENST00000636228 TNRC6CQ9HCJ0 1690 aaKnown RBP21.4■■□□□ 1.02
CLN3-246ENST00000636228 LTBP3Q9NS15 1303 aa21.39■■□□□ 1.01
CLN3-246ENST00000636228 DDNO94850 711 aaPredicted RBP21.39■■□□□ 1.01
CLN3-246ENST00000636228 NPR1P16066 1061 aa21.39■■□□□ 1.01
CLN3-246ENST00000636228 EIF4A1P60842 406 aaKnown RBP21.39■■□□□ 1.01
CLN3-246ENST00000636228 BCORQ6W2J9 1755 aa21.38■■□□□ 1.01
CLN3-246ENST00000636228 WDR90Q96KV7 1748 aa21.38■■□□□ 1.01
CLN3-246ENST00000636228 MYL6BP14649 208 aa21.38■■□□□ 1.01
CLN3-246ENST00000636228 PNISRQ8TF01 805 aaKnown RBP21.38■■□□□ 1.01
CLN3-246ENST00000636228 SLX4Q8IY92 1834 aa21.37■■□□□ 1.01
CLN3-246ENST00000636228 KLRG2A4D1S0 409 aaPredicted RBP21.37■■□□□ 1.01
CLN3-246ENST00000636228 GTF2E1P29083 439 aaPredicted RBP21.37■■□□□ 1.01
CLN3-246ENST00000636228 TTLL7Q6ZT98 887 aa21.37■■□□□ 1.01
CLN3-246ENST00000636228 TIAM2Q8IVF5 1701 aa21.36■■□□□ 1.01
CLN3-246ENST00000636228 SOGA3Q5TF21 947 aa21.36■■□□□ 1.01
CLN3-246ENST00000636228 NUTM1Q86Y26 1132 aa21.36■■□□□ 1.01
CLN3-246ENST00000636228 POTEIP0CG38 1075 aa21.35■■□□□ 1.01
CLN3-246ENST00000636228 POTEJP0CG39 1038 aa21.35■■□□□ 1.01
CLN3-246ENST00000636228 CCDC93Q567U6 631 aa21.35■■□□□ 1.01
CLN3-246ENST00000636228 JMYQ8N9B5 988 aa21.35■■□□□ 1.01
CLN3-246ENST00000636228 ZNF277Q9NRM2 450 aaPredicted RBP21.35■■□□□ 1.01
CLN3-246ENST00000636228 MAPK8IP3Q9UPT6 1336 aa21.34■■□□□ 1.01
CLN3-246ENST00000636228 GPTP24298 496 aa21.34■■□□□ 1.01
CLN3-246ENST00000636228 ZBTB3Q9H5J0 574 aa21.34■■□□□ 1.01
CLN3-246ENST00000636228 CCDC88AQ3V6T2 1871 aa21.33■■□□□ 1.01
CLN3-246ENST00000636228 RGL2O15211 777 aa21.33■■□□□ 1.01
CLN3-246ENST00000636228 MAP3K15Q6ZN16 1313 aa21.32■■□□□ 1
CLN3-246ENST00000636228 ERVV-1B6SEH8 477 aa21.32■■□□□ 1
CLN3-246ENST00000636228 FKBP4Q02790 459 aaKnown RBP eCLIP21.32■■□□□ 1
CLN3-246ENST00000636228 FER1L6Q2WGJ9 1857 aa21.32■■□□□ 1
CLN3-246ENST00000636228 KIF6Q6ZMV9 814 aa21.31■■□□□ 1
CLN3-246ENST00000636228 PNNQ9H307 717 aaKnown RBP21.31■■□□□ 1
CLN3-246ENST00000636228 ABCC12Q96J65 1359 aa21.31■■□□□ 1
CLN3-246ENST00000636228 ALDH1B1P30837 517 aa21.3■■□□□ 1
CLN3-246ENST00000636228 RIPK4P57078 832 aa21.3■■□□□ 1
CLN3-246ENST00000636228 SUSD4Q5VX71 490 aa21.3■■□□□ 1
CLN3-246ENST00000636228 CHADLQ6NUI6 762 aa21.3■■□□□ 1
CLN3-246ENST00000636228 TSPYL4Q9UJ04 414 aa21.3■■□□□ 1
CLN3-246ENST00000636228 UBN2Q6ZU65 1347 aa21.29■■□□□ 1
CLN3-246ENST00000636228 ZNF541Q9H0D2 1346 aa21.29■■□□□ 1
CLN3-246ENST00000636228 EIF2S2P20042 333 aaKnown RBP21.29■■□□□ 1
CLN3-246ENST00000636228 SLC51AQ86UW1 340 aa21.29■■□□□ 1
CLN3-246ENST00000636228 SYNE4Q8N205 404 aa21.29■■□□□ 1
CLN3-246ENST00000636228 NYXQ9GZU5 481 aa21.29■■□□□ 1
CLN3-246ENST00000636228 COL13A1Q5TAT6 717 aaPredicted RBP21.28■■□□□ 1
CLN3-246ENST00000636228 RTKN2Q8IZC4 609 aa21.28■■□□□ 1
CLN3-246ENST00000636228 CACNA1SQ13698 1873 aa21.28■■□□□ 1
CLN3-246ENST00000636228 TCERG1O14776 1098 aaKnown RBP21.27■■□□□ 1
CLN3-246ENST00000636228 ANXA1P04083 346 aa21.27■■□□□ 1
CLN3-246ENST00000636228 CRY2Q49AN0 593 aa21.27■■□□□ 1
CLN3-246ENST00000636228 PDIA6Q15084 440 aa21.26■□□□□ 0.99
CLN3-246ENST00000636228 PROSER3Q2NL68 480 aa21.26■□□□□ 0.99
CLN3-246ENST00000636228 C3orf67Q6ZVT6 689 aa21.26■□□□□ 0.99
CLN3-246ENST00000636228 ZNF34Q8IZ26 560 aa21.26■□□□□ 0.99
CLN3-246ENST00000636228 NECTIN2Q92692 538 aa21.26■□□□□ 0.99
CLN3-246ENST00000636228 TAF1DQ9H5J8 278 aaPredicted RBP21.26■□□□□ 0.99
CLN3-246ENST00000636228 KDM3BQ7LBC6 1761 aa21.25■□□□□ 0.99
CLN3-246ENST00000636228 DLG5Q8TDM6 1919 aa21.25■□□□□ 0.99
CLN3-246ENST00000636228 IARSP41252 1262 aaKnown RBP21.25■□□□□ 0.99
CLN3-246ENST00000636228 TMPOP42166 694 aaKnown RBP21.25■□□□□ 0.99
CLN3-246ENST00000636228 DDX10Q13206 875 aaKnown RBP21.25■□□□□ 0.99
CLN3-246ENST00000636228 RALBP1Q15311 655 aa21.25■□□□□ 0.99
CLN3-246ENST00000636228 GIGYF2Q6Y7W6 1299 aaKnown RBP21.25■□□□□ 0.99
CLN3-246ENST00000636228 CCDC146Q8IYE0 955 aa21.25■□□□□ 0.99
CLN3-246ENST00000636228 RPGRQ92834 1020 aaKnown RBP21.25■□□□□ 0.99
CLN3-246ENST00000636228 L3MBTL3Q96JM7 780 aaPredicted RBP21.25■□□□□ 0.99
CLN3-246ENST00000636228 LAMB4A4D0S4 1761 aa21.24■□□□□ 0.99
CLN3-246ENST00000636228 IQCA1LA6NCM1 817 aa21.24■□□□□ 0.99
CLN3-246ENST00000636228 NEUROD2Q15784 382 aa21.24■□□□□ 0.99
CLN3-246ENST00000636228 EAPPQ56P03 285 aaPredicted RBP21.24■□□□□ 0.99
CLN3-246ENST00000636228 LRP10Q7Z4F1 713 aa21.24■□□□□ 0.99
CLN3-246ENST00000636228 NTSR2O95665 410 aa21.23■□□□□ 0.99
CLN3-246ENST00000636228 MKRN1Q9UHC7 482 aaKnown RBP21.23■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms