RNA–Protein interactions for RNA: ENST00000630866.1

SPTAN1-223, Transcript of spectrin alpha, non-erythrocytic 1, human

TSL 5 BASIC

Gene SPTAN1, Length 7,498 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPTAN1-223	ENST00000630866	PIK3R4	Q99570	1358 aa		10.05	□□□□□ -0.8
SPTAN1-223	ENST00000630866	SLC39A6	Q13433	755 aa		10.04	□□□□□ -0.8
SPTAN1-223	ENST00000630866	USP21	Q9UK80	565 aa		10.04	□□□□□ -0.8
SPTAN1-223	ENST00000630866	GPATCH8	Q9UKJ3	1502 aa	Known RBP	10.04	□□□□□ -0.8
SPTAN1-223	ENST00000630866	GNPAT	O15228	680 aa		10.04	□□□□□ -0.8
SPTAN1-223	ENST00000630866	TMEM266	Q2M3C6	531 aa		10.04	□□□□□ -0.8
SPTAN1-223	ENST00000630866	AKAP4	Q5JQC9	854 aa		10.04	□□□□□ -0.8
SPTAN1-223	ENST00000630866	MBD3	O95983	291 aa		10.04	□□□□□ -0.8
SPTAN1-223	ENST00000630866	UQCRFS1P1	P0C7P4	283 aa		10.04	□□□□□ -0.8
SPTAN1-223	ENST00000630866	EYA3	Q99504	573 aa		10.04	□□□□□ -0.8
SPTAN1-223	ENST00000630866	WDR33	Q9C0J8	1336 aa	Known RBP	10.04	□□□□□ -0.8
SPTAN1-223	ENST00000630866	BAG4	O95429	457 aa	Known RBP	10.04	□□□□□ -0.8
SPTAN1-223	ENST00000630866	KCNA6	P17658	529 aa		10.04	□□□□□ -0.8
SPTAN1-223	ENST00000630866	CCDC82	Q8N4S0	544 aa		10.04	□□□□□ -0.8
SPTAN1-223	ENST00000630866	KIF5B	P33176	963 aa		10.04	□□□□□ -0.8
SPTAN1-223	ENST00000630866	VAT1L	Q9HCJ6	419 aa		10.04	□□□□□ -0.8
SPTAN1-223	ENST00000630866	GJA3	Q9Y6H8	435 aa		10.04	□□□□□ -0.8
SPTAN1-223	ENST00000630866	KAT14	Q9H8E8	782 aa		10.03	□□□□□ -0.8
SPTAN1-223	ENST00000630866	BIN2	Q9UBW5	565 aa	Predicted RBP	10.03	□□□□□ -0.8
SPTAN1-223	ENST00000630866	GC	P02774	474 aa		10.03	□□□□□ -0.8
SPTAN1-223	ENST00000630866	NEFH	P12036	1026 aa		10.03	□□□□□ -0.8
SPTAN1-223	ENST00000630866	SLFN5	Q08AF3	891 aa		10.03	□□□□□ -0.8
SPTAN1-223	ENST00000630866	PPFIBP1	Q86W92	1011 aa		10.03	□□□□□ -0.8
SPTAN1-223	ENST00000630866	TXLNB	Q8N3L3	684 aa		10.03	□□□□□ -0.8
SPTAN1-223	ENST00000630866	CCDC12	Q8WUD4	166 aa	Predicted RBP	10.03	□□□□□ -0.8
SPTAN1-223	ENST00000630866	GOLIM4	O00461	696 aa		10.03	□□□□□ -0.8
SPTAN1-223	ENST00000630866	CCDC150	Q8NCX0	1101 aa		10.03	□□□□□ -0.8
SPTAN1-223	ENST00000630866	SSH1	Q8WYL5	1049 aa		10.03	□□□□□ -0.8
SPTAN1-223	ENST00000630866	JARID2	Q92833	1246 aa	Predicted RBP	10.03	□□□□□ -0.8
SPTAN1-223	ENST00000630866	DDX11	Q96FC9	970 aa		10.03	□□□□□ -0.8
SPTAN1-223	ENST00000630866	CCNL1	Q9UK58	526 aa	Predicted RBP	10.03	□□□□□ -0.8
SPTAN1-223	ENST00000630866	ANKRD36B	Q8N2N9	1353 aa		10.03	□□□□□ -0.8
SPTAN1-223	ENST00000630866	HMGB1	P09429	215 aa	Known RBP	10.03	□□□□□ -0.8
SPTAN1-223	ENST00000630866	PODXL2	Q9NZ53	605 aa		10.03	□□□□□ -0.8
SPTAN1-223	ENST00000630866	NSFL1C	Q9UNZ2	370 aa	Known RBP	10.03	□□□□□ -0.8
SPTAN1-223	ENST00000630866	SAMM50	Q9Y512	469 aa		10.03	□□□□□ -0.8
SPTAN1-223	ENST00000630866	NLRP5	P59047	1200 aa		10.03	□□□□□ -0.8
SPTAN1-223	ENST00000630866	SNRK	Q9NRH2	765 aa		10.03	□□□□□ -0.8
SPTAN1-223	ENST00000630866	BIVM-ERCC5	R4GMW8	1640 aa		10.03	□□□□□ -0.8
SPTAN1-223	ENST00000630866	PPP4R3B	Q5MIZ7	849 aa		10.03	□□□□□ -0.8
SPTAN1-223	ENST00000630866	ZNF772	Q68DY9	489 aa	Predicted RBP	10.03	□□□□□ -0.8
SPTAN1-223	ENST00000630866	XAGE3	Q8WTP9	111 aa		10.03	□□□□□ -0.8
SPTAN1-223	ENST00000630866	SMARCA5	O60264	1052 aa	Predicted RBP	10.02	□□□□□ -0.8
SPTAN1-223	ENST00000630866	KCNA4	P22459	653 aa		10.02	□□□□□ -0.8
SPTAN1-223	ENST00000630866	PCDH11X	Q9BZA7	1347 aa		10.02	□□□□□ -0.8
SPTAN1-223	ENST00000630866	PCDH11Y	Q9BZA8	1340 aa		10.02	□□□□□ -0.8
SPTAN1-223	ENST00000630866	FAM98C	Q17RN3	349 aa	Known RBP	10.02	□□□□□ -0.8
SPTAN1-223	ENST00000630866	UBA5	Q9GZZ9	404 aa		10.02	□□□□□ -0.8
SPTAN1-223	ENST00000630866	ZRANB1	Q9UGI0	708 aa		10.02	□□□□□ -0.8
SPTAN1-223	ENST00000630866	CCDC194	A0A1B0GVG4	234 aa		10.02	□□□□□ -0.81
SPTAN1-223	ENST00000630866	LIG1	P18858	919 aa		10.02	□□□□□ -0.81
SPTAN1-223	ENST00000630866	DHX8	Q14562	1220 aa	Known RBP	10.02	□□□□□ -0.81
SPTAN1-223	ENST00000630866	COPS6	Q7L5N1	327 aa		10.02	□□□□□ -0.81
SPTAN1-223	ENST00000630866	TRMT1L	Q7Z2T5	733 aa	Known RBP	10.02	□□□□□ -0.81
SPTAN1-223	ENST00000630866	CCDC39	Q9UFE4	941 aa		10.02	□□□□□ -0.81
SPTAN1-223	ENST00000630866	NFATC2IP	Q8NCF5	419 aa		10.02	□□□□□ -0.81
SPTAN1-223	ENST00000630866	TSHZ2	Q9NRE2	1034 aa		10.02	□□□□□ -0.81
SPTAN1-223	ENST00000630866	PRPF40A	O75400	957 aa	Known RBP	10.02	□□□□□ -0.81
SPTAN1-223	ENST00000630866	ANXA1	P04083	346 aa		10.02	□□□□□ -0.81
SPTAN1-223	ENST00000630866	TNMD	Q9H2S6	317 aa		10.02	□□□□□ -0.81
SPTAN1-223	ENST00000630866	APBA3	O96018	575 aa		10.02	□□□□□ -0.81
SPTAN1-223	ENST00000630866	PICALM	Q13492	652 aa		10.02	□□□□□ -0.81
SPTAN1-223	ENST00000630866	FANCI	Q9NVI1	1328 aa		10.02	□□□□□ -0.81
SPTAN1-223	ENST00000630866	PEG3	Q9GZU2	1588 aa		10.01	□□□□□ -0.81
SPTAN1-223	ENST00000630866	FAM83G	A6ND36	823 aa		10.01	□□□□□ -0.81
SPTAN1-223	ENST00000630866	RIMBP2	O15034	1052 aa		10.01	□□□□□ -0.81
SPTAN1-223	ENST00000630866	SSRP1	Q08945	709 aa	Known RBP	10.01	□□□□□ -0.81
SPTAN1-223	ENST00000630866	PLS1	Q14651	629 aa		10.01	□□□□□ -0.81
SPTAN1-223	ENST00000630866	SSR1	P43307	286 aa	Known RBP	10.01	□□□□□ -0.81
SPTAN1-223	ENST00000630866	TRAF1	Q13077	416 aa		10.01	□□□□□ -0.81
SPTAN1-223	ENST00000630866	RBM17	Q96I25	401 aa	Known RBP	10.01	□□□□□ -0.81
SPTAN1-223	ENST00000630866	SPATA32	Q96LK8	384 aa		10.01	□□□□□ -0.81
SPTAN1-223	ENST00000630866	TNNI2	P48788	182 aa		10.01	□□□□□ -0.81
SPTAN1-223	ENST00000630866	CCDC181	Q5TID7	509 aa		10.01	□□□□□ -0.81
SPTAN1-223	ENST00000630866	PRPF40B	Q6NWY9	871 aa	Known RBP	10.01	□□□□□ -0.81
SPTAN1-223	ENST00000630866	TSPYL1	Q9H0U9	437 aa		10.01	□□□□□ -0.81
SPTAN1-223	ENST00000630866	FBLN1	P23142	703 aa		10.01	□□□□□ -0.81
SPTAN1-223	ENST00000630866	MFSD6	Q6ZSS7	791 aa		10.01	□□□□□ -0.81
SPTAN1-223	ENST00000630866	CHPF2	Q9P2E5	772 aa		10.01	□□□□□ -0.81
SPTAN1-223	ENST00000630866	STX8	Q9UNK0	236 aa		10.01	□□□□□ -0.81
SPTAN1-223	ENST00000630866	ECM2	O94769	699 aa	Predicted RBP	10.01	□□□□□ -0.81
SPTAN1-223	ENST00000630866	RNF214	Q8ND24	703 aa		10.01	□□□□□ -0.81
SPTAN1-223	ENST00000630866	TBX22	Q9Y458	520 aa		10.01	□□□□□ -0.81
SPTAN1-223	ENST00000630866		B4DLN1	442 aa		10.01	□□□□□ -0.81
SPTAN1-223	ENST00000630866	MRPL12	P52815	198 aa	Known RBP	10.01	□□□□□ -0.81
SPTAN1-223	ENST00000630866	PHAX	Q9H814	394 aa	Known RBP	10.01	□□□□□ -0.81
SPTAN1-223	ENST00000630866	TRPM2	O94759	1503 aa		10.01	□□□□□ -0.81
SPTAN1-223	ENST00000630866	TSPY3	P0CV98	308 aa		10	□□□□□ -0.81
SPTAN1-223	ENST00000630866	TSPY8	P0CW00	308 aa		10	□□□□□ -0.81
SPTAN1-223	ENST00000630866	PDIA4	P13667	645 aa	Known RBP	10	□□□□□ -0.81
SPTAN1-223	ENST00000630866	CAVIN1	Q6NZI2	390 aa	Known RBP	10	□□□□□ -0.81
SPTAN1-223	ENST00000630866	CTTNBP2	Q8WZ74	1663 aa		10	□□□□□ -0.81
SPTAN1-223	ENST00000630866	GOLGA8A	A7E2F4	631 aa		10	□□□□□ -0.81
SPTAN1-223	ENST00000630866	GOLGA8B	A8MQT2	603 aa		10	□□□□□ -0.81
SPTAN1-223	ENST00000630866	ERCC4	Q92889	916 aa	Predicted RBP	10	□□□□□ -0.81
SPTAN1-223	ENST00000630866	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	10	□□□□□ -0.81
SPTAN1-223	ENST00000630866	ERLIN2	O94905	339 aa		10	□□□□□ -0.81
SPTAN1-223	ENST00000630866	DYDC1	Q8WWB3	177 aa		10	□□□□□ -0.81
SPTAN1-223	ENST00000630866	CYP7A1	P22680	504 aa		10	□□□□□ -0.81
SPTAN1-223	ENST00000630866	DCAF5	Q96JK2	942 aa		10	□□□□□ -0.81

Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms