RNA–Protein interactions for RNA: ENST00000625662.2

CHD2-205, Transcript of chromodomain helicase DNA binding protein 2, human

TSL 5

Gene CHD2, Length 5,127 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD2-205	ENST00000625662	CTCFL	Q8NI51	663 aa	Predicted RBP	13.87	□□□□□ -0.19
CHD2-205	ENST00000625662	CDCA7L	Q96GN5	454 aa		13.87	□□□□□ -0.19
CHD2-205	ENST00000625662	SPINK5	Q9NQ38	1064 aa	Predicted RBP	13.87	□□□□□ -0.19
CHD2-205	ENST00000625662	THRAP3	Q9Y2W1	955 aa	Known RBP	13.87	□□□□□ -0.19
CHD2-205	ENST00000625662	RABEP1	Q15276	862 aa		13.86	□□□□□ -0.19
CHD2-205	ENST00000625662	COPS6	Q7L5N1	327 aa		13.86	□□□□□ -0.19
CHD2-205	ENST00000625662	EYA1	Q99502	592 aa		13.86	□□□□□ -0.19
CHD2-205	ENST00000625662		A0A1W2PP64	1363 aa		13.86	□□□□□ -0.19
CHD2-205	ENST00000625662	PZP	P20742	1482 aa		13.86	□□□□□ -0.19
CHD2-205	ENST00000625662	ATP5J2-PTCD1	G3V325	749 aa		13.86	□□□□□ -0.19
CHD2-205	ENST00000625662	DPY19L2	Q6NUT2	758 aa		13.86	□□□□□ -0.19
CHD2-205	ENST00000625662	BLOC1S2	Q6QNY1	142 aa		13.86	□□□□□ -0.19
CHD2-205	ENST00000625662	ZSCAN31	Q96LW9	406 aa	Predicted RBP	13.86	□□□□□ -0.19
CHD2-205	ENST00000625662	LRRFIP2	Q9Y608	721 aa	Known RBP	13.86	□□□□□ -0.19
CHD2-205	ENST00000625662	PI4KAP2	A4QPH2	592 aa		13.86	□□□□□ -0.19
CHD2-205	ENST00000625662	PI4KAP1	Q8N8J0	262 aa		13.86	□□□□□ -0.19
CHD2-205	ENST00000625662	PREX2	Q70Z35	1606 aa		13.86	□□□□□ -0.19
CHD2-205	ENST00000625662	OLFM4	Q6UX06	510 aa		13.85	□□□□□ -0.19
CHD2-205	ENST00000625662	AEBP1	Q8IUX7	1158 aa		13.85	□□□□□ -0.19
CHD2-205	ENST00000625662	CCDC12	Q8WUD4	166 aa	Predicted RBP	13.85	□□□□□ -0.19
CHD2-205	ENST00000625662	PLXNC1	O60486	1568 aa		13.85	□□□□□ -0.19
CHD2-205	ENST00000625662	HOXB7	P09629	217 aa		13.85	□□□□□ -0.19
CHD2-205	ENST00000625662	IL15	P40933	162 aa	Predicted RBP	13.85	□□□□□ -0.19
CHD2-205	ENST00000625662	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	13.85	□□□□□ -0.19
CHD2-205	ENST00000625662	UNC5CL	Q8IV45	518 aa		13.85	□□□□□ -0.19
CHD2-205	ENST00000625662	MINDY4B	A8MYZ0	360 aa		13.85	□□□□□ -0.19
CHD2-205	ENST00000625662	SLC39A6	Q13433	755 aa		13.85	□□□□□ -0.19
CHD2-205	ENST00000625662	CERS3	Q8IU89	383 aa		13.85	□□□□□ -0.19
CHD2-205	ENST00000625662	NLGN1	Q8N2Q7	840 aa		13.85	□□□□□ -0.19
CHD2-205	ENST00000625662	C22orf23	Q9BZE7	217 aa		13.85	□□□□□ -0.19
CHD2-205	ENST00000625662	POLR3A	O14802	1390 aa	Predicted RBP	13.85	□□□□□ -0.19
CHD2-205	ENST00000625662	ZFY	P08048	801 aa	Predicted RBP	13.84	□□□□□ -0.19
CHD2-205	ENST00000625662	PDE4A	P27815	886 aa		13.84	□□□□□ -0.19
CHD2-205	ENST00000625662	ODF2	Q5BJF6	829 aa		13.84	□□□□□ -0.19
CHD2-205	ENST00000625662	FOXD4L5	Q5VV16	416 aa	Predicted RBP	13.84	□□□□□ -0.19
CHD2-205	ENST00000625662	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	13.84	□□□□□ -0.19
CHD2-205	ENST00000625662	PRIM1	P49642	420 aa	Known RBP	13.84	□□□□□ -0.19
CHD2-205	ENST00000625662	CT47A1	Q5JQC4	288 aa	Predicted RBP	13.84	□□□□□ -0.19
CHD2-205	ENST00000625662	MBIP	Q9NS73	344 aa		13.84	□□□□□ -0.19
CHD2-205	ENST00000625662	CHD1L	Q86WJ1	897 aa		13.84	□□□□□ -0.19
CHD2-205	ENST00000625662	ARHGAP45	Q92619	1136 aa		13.84	□□□□□ -0.19
CHD2-205	ENST00000625662	IL1RAPL2	Q9NP60	686 aa		13.84	□□□□□ -0.19
CHD2-205	ENST00000625662	PDZRN3	Q9UPQ7	1066 aa		13.83	□□□□□ -0.19
CHD2-205	ENST00000625662	IRS4	O14654	1257 aa	Predicted RBP	13.83	□□□□□ -0.2
CHD2-205	ENST00000625662	MX1	P20591	662 aa		13.83	□□□□□ -0.2
CHD2-205	ENST00000625662	MTHFSD	Q2M296	383 aa	Known RBP	13.83	□□□□□ -0.2
CHD2-205	ENST00000625662	LINS1	Q8NG48	757 aa		13.83	□□□□□ -0.2
CHD2-205	ENST00000625662	KIF5B	P33176	963 aa		13.83	□□□□□ -0.2
CHD2-205	ENST00000625662	ATP2B3	Q16720	1220 aa		13.83	□□□□□ -0.2
CHD2-205	ENST00000625662	NSFL1C	Q9UNZ2	370 aa	Known RBP	13.83	□□□□□ -0.2
CHD2-205	ENST00000625662	RIMBP3C	A6NJZ7	1639 aa		13.83	□□□□□ -0.2
CHD2-205	ENST00000625662	RIMBP3B	A6NNM3	1639 aa		13.83	□□□□□ -0.2
CHD2-205	ENST00000625662	RIMBP3	Q9UFD9	1639 aa		13.83	□□□□□ -0.2
CHD2-205	ENST00000625662	TMEM87A	Q8NBN3	555 aa		13.83	□□□□□ -0.2
CHD2-205	ENST00000625662	SH2D4A	Q9H788	454 aa		13.83	□□□□□ -0.2
CHD2-205	ENST00000625662	TMEM57	Q8N5G2	664 aa		13.82	□□□□□ -0.2
CHD2-205	ENST00000625662	NAT10	Q9H0A0	1025 aa	Known RBP	13.82	□□□□□ -0.2
CHD2-205	ENST00000625662	CHPF2	Q9P2E5	772 aa		13.82	□□□□□ -0.2
CHD2-205	ENST00000625662	CARD10	Q9BWT7	1032 aa		13.82	□□□□□ -0.2
CHD2-205	ENST00000625662	SH3TC1	Q8TE82	1336 aa		13.82	□□□□□ -0.2
CHD2-205	ENST00000625662	NIM1K	Q8IY84	436 aa		13.82	□□□□□ -0.2
CHD2-205	ENST00000625662	SSH1	Q8WYL5	1049 aa		13.82	□□□□□ -0.2
CHD2-205	ENST00000625662	SCLT1	Q96NL6	688 aa		13.82	□□□□□ -0.2
CHD2-205	ENST00000625662	TTC37	Q6PGP7	1564 aa		13.82	□□□□□ -0.2
CHD2-205	ENST00000625662	STIM1	Q13586	685 aa		13.82	□□□□□ -0.2
CHD2-205	ENST00000625662	CLASP1	Q7Z460	1538 aa		13.82	□□□□□ -0.2
CHD2-205	ENST00000625662	RBM6	P78332	1123 aa	Known RBP	13.81	□□□□□ -0.2
CHD2-205	ENST00000625662	RAB34	Q9BZG1	259 aa		13.81	□□□□□ -0.2
CHD2-205	ENST00000625662	CEP131	Q9UPN4	1083 aa		13.81	□□□□□ -0.2
CHD2-205	ENST00000625662	RDX	P35241	583 aa	Known RBP	13.81	□□□□□ -0.2
CHD2-205	ENST00000625662	CCDC70	Q6NSX1	233 aa		13.81	□□□□□ -0.2
CHD2-205	ENST00000625662	STK11IP	Q8N1F8	1099 aa		13.81	□□□□□ -0.2
CHD2-205	ENST00000625662	LARGE2	Q8N3Y3	721 aa		13.81	□□□□□ -0.2
CHD2-205	ENST00000625662	CNKSR1	Q969H4	720 aa		13.81	□□□□□ -0.2
CHD2-205	ENST00000625662	ARHGAP31	Q2M1Z3	1444 aa		13.81	□□□□□ -0.2
CHD2-205	ENST00000625662	MBD5	Q9P267	1494 aa		13.81	□□□□□ -0.2
CHD2-205	ENST00000625662	GRM8	O00222	908 aa		13.81	□□□□□ -0.2
CHD2-205	ENST00000625662	SASS6	Q6UVJ0	657 aa		13.81	□□□□□ -0.2
CHD2-205	ENST00000625662	GRM1	Q13255	1194 aa		13.8	□□□□□ -0.2
CHD2-205	ENST00000625662	STK38	Q15208	465 aa		13.8	□□□□□ -0.2
CHD2-205	ENST00000625662	IL27	Q8NEV9	243 aa		13.8	□□□□□ -0.2
CHD2-205	ENST00000625662	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	13.8	□□□□□ -0.2	3e-7	■■■□□ 18.1
CHD2-205	ENST00000625662	OFD1	O75665	1012 aa		13.8	□□□□□ -0.2
CHD2-205	ENST00000625662	DES	P17661	470 aa		13.8	□□□□□ -0.2
CHD2-205	ENST00000625662	CATIP	Q7Z7H3	387 aa		13.8	□□□□□ -0.2
CHD2-205	ENST00000625662	SLC52A2	Q9HAB3	445 aa		13.8	□□□□□ -0.2
CHD2-205	ENST00000625662	GJA3	Q9Y6H8	435 aa		13.8	□□□□□ -0.2
CHD2-205	ENST00000625662	JCAD	Q9P266	1359 aa		13.8	□□□□□ -0.2
CHD2-205	ENST00000625662	ZNF213	O14771	459 aa		13.8	□□□□□ -0.2
CHD2-205	ENST00000625662	RANBP6	O60518	1105 aa	Known RBP	13.8	□□□□□ -0.2
CHD2-205	ENST00000625662	DDX21	Q9NR30	783 aa	Known RBP eCLIP	13.8	□□□□□ -0.2
CHD2-205	ENST00000625662	ARHGEF6	Q15052	776 aa		13.8	□□□□□ -0.2
CHD2-205	ENST00000625662	EVI5L	Q96CN4	794 aa		13.8	□□□□□ -0.2
CHD2-205	ENST00000625662	VEZT	Q9HBM0	779 aa		13.8	□□□□□ -0.2
CHD2-205	ENST00000625662	ECHDC1	Q9NTX5	307 aa		13.8	□□□□□ -0.2
CHD2-205	ENST00000625662	GGA1	Q9UJY5	639 aa		13.8	□□□□□ -0.2
CHD2-205	ENST00000625662	FAM135B	Q49AJ0	1406 aa		13.8	□□□□□ -0.2
CHD2-205	ENST00000625662	FOSB	P53539	338 aa		13.79	□□□□□ -0.2
CHD2-205	ENST00000625662	PHAX	Q9H814	394 aa	Known RBP	13.79	□□□□□ -0.2
CHD2-205	ENST00000625662	FAM13B	Q9NYF5	915 aa		13.79	□□□□□ -0.2

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