RNA–Protein interactions for RNA: ENST00000622226.1

PDLIM2-220, Transcript of PDZ and LIM domain 2, humanhuman

Gene PDLIM2, Length 6,559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-220ENST00000622226 SULT6B1Q6IMI4 303 aa17.57■□□□□ 0.4
PDLIM2-220ENST00000622226 AIDAQ96BJ3 306 aa17.57■□□□□ 0.4
PDLIM2-220ENST00000622226 CTAGE5O15320 804 aa17.56■□□□□ 0.4
PDLIM2-220ENST00000622226 THEMISQ8N1K5 641 aaPredicted RBP17.56■□□□□ 0.4
PDLIM2-220ENST00000622226 PRAM1Q96QH2 718 aa17.56■□□□□ 0.4
PDLIM2-220ENST00000622226 MMRN2Q9H8L6 949 aa17.56■□□□□ 0.4
PDLIM2-220ENST00000622226 ABCF2Q9UG63 623 aa17.56■□□□□ 0.4
PDLIM2-220ENST00000622226 RAB11FIP3O75154 756 aa17.56■□□□□ 0.4
PDLIM2-220ENST00000622226 CFAP58Q5T655 872 aa17.56■□□□□ 0.4
PDLIM2-220ENST00000622226 PSMC4P43686 418 aa17.56■□□□□ 0.4
PDLIM2-220ENST00000622226 BOLA2Q9H3K6 86 aa17.56■□□□□ 0.4
PDLIM2-220ENST00000622226 CCDC171Q6TFL3 1326 aa17.56■□□□□ 0.4
PDLIM2-220ENST00000622226 KIAA0753Q2KHM9 967 aa17.56■□□□□ 0.4
PDLIM2-220ENST00000622226 CCDC114Q96M63 670 aa17.56■□□□□ 0.4
PDLIM2-220ENST00000622226 NSRP1Q9H0G5 558 aaKnown RBP17.56■□□□□ 0.4
PDLIM2-220ENST00000622226 ZBTB16Q05516 673 aa17.55■□□□□ 0.4
PDLIM2-220ENST00000622226 CKAP4Q07065 602 aaKnown RBP17.55■□□□□ 0.4
PDLIM2-220ENST00000622226 CCDC40Q4G0X9 1142 aa17.55■□□□□ 0.4
PDLIM2-220ENST00000622226 BAG4O95429 457 aaKnown RBP17.55■□□□□ 0.4
PDLIM2-220ENST00000622226 CPSF2Q9P2I0 782 aaKnown RBP17.55■□□□□ 0.4
PDLIM2-220ENST00000622226 PRC1O43663 620 aa17.55■□□□□ 0.4
PDLIM2-220ENST00000622226 GJB2P29033 226 aa17.55■□□□□ 0.4
PDLIM2-220ENST00000622226 DDX19AQ9NUU7 478 aaKnown RBP17.55■□□□□ 0.4
PDLIM2-220ENST00000622226 POLR3DP05423 398 aaPredicted RBP17.55■□□□□ 0.4
PDLIM2-220ENST00000622226 ARL1P40616 181 aaPredicted RBP17.55■□□□□ 0.4
PDLIM2-220ENST00000622226 CCDC144CPQ8IYA2 1237 aa17.55■□□□□ 0.4
PDLIM2-220ENST00000622226 WDR66Q8TBY9 1149 aa17.54■□□□□ 0.4
PDLIM2-220ENST00000622226 TTC12Q9H892 705 aaPredicted RBP17.54■□□□□ 0.4
PDLIM2-220ENST00000622226 CTAGE15A4D2H0 777 aa17.54■□□□□ 0.4
PDLIM2-220ENST00000622226 EBAG9O00559 213 aa17.54■□□□□ 0.4
PDLIM2-220ENST00000622226 CTAGE8P0CG41 777 aa17.54■□□□□ 0.4
PDLIM2-220ENST00000622226 SKILP12757 684 aa17.54■□□□□ 0.4
PDLIM2-220ENST00000622226 PTGS1P23219 599 aa17.54■□□□□ 0.4
PDLIM2-220ENST00000622226 CTAGE6Q86UF2 777 aa17.54■□□□□ 0.4
PDLIM2-220ENST00000622226 CTAGE4Q8IX94 777 aa17.54■□□□□ 0.4
PDLIM2-220ENST00000622226 GOLGA6L9A6NEM1 432 aa17.54■□□□□ 0.4
PDLIM2-220ENST00000622226 CLCN1P35523 988 aa17.54■□□□□ 0.4
PDLIM2-220ENST00000622226 C20orf194Q5TEA3 1177 aa17.54■□□□□ 0.4
PDLIM2-220ENST00000622226 CCDC186Q7Z3E2 898 aa17.54■□□□□ 0.4
PDLIM2-220ENST00000622226 CEP126Q9P2H0 1117 aa17.54■□□□□ 0.4
PDLIM2-220ENST00000622226 SEC63Q9UGP8 760 aaKnown RBP17.54■□□□□ 0.4
PDLIM2-220ENST00000622226 FGFR1OPO95684 399 aaKnown RBP17.54■□□□□ 0.4
PDLIM2-220ENST00000622226 MIA2Q96PC5 1412 aa17.54■□□□□ 0.4
PDLIM2-220ENST00000622226 PUF60Q9UHX1 559 aaKnown RBP17.54■□□□□ 0.4
PDLIM2-220ENST00000622226 PLEKHO1Q53GL0 409 aaPredicted RBP17.53■□□□□ 0.4
PDLIM2-220ENST00000622226 RAB11FIP4Q86YS3 637 aa17.53■□□□□ 0.4
PDLIM2-220ENST00000622226 GTPBP4Q9BZE4 634 aaKnown RBP17.53■□□□□ 0.4
PDLIM2-220ENST00000622226 ZWINTO95229 277 aa17.53■□□□□ 0.4
PDLIM2-220ENST00000622226 IDEP14735 1019 aa17.53■□□□□ 0.4
PDLIM2-220ENST00000622226 ANKS4BQ8N8V4 417 aa17.53■□□□□ 0.4
PDLIM2-220ENST00000622226 GTF3C6Q969F1 213 aa17.53■□□□□ 0.4
PDLIM2-220ENST00000622226 CCDC150Q8NCX0 1101 aa17.53■□□□□ 0.4
PDLIM2-220ENST00000622226 MX1P20591 662 aa17.53■□□□□ 0.4
PDLIM2-220ENST00000622226 CAPZA3Q96KX2 299 aa17.53■□□□□ 0.4
PDLIM2-220ENST00000622226 TSNARE1Q96NA8 513 aa17.53■□□□□ 0.4
PDLIM2-220ENST00000622226 U3KPZ7 1027 aaPredicted RBP17.53■□□□□ 0.4
PDLIM2-220ENST00000622226 KIF5BP33176 963 aa17.52■□□□□ 0.4
PDLIM2-220ENST00000622226 CCDC94Q9BW85 323 aaPredicted RBP17.52■□□□□ 0.4
PDLIM2-220ENST00000622226 IQCGQ9H095 443 aaKnown RBP17.52■□□□□ 0.4
PDLIM2-220ENST00000622226 RASSF4Q9H2L5 321 aa17.52■□□□□ 0.4
PDLIM2-220ENST00000622226 CLEC11AQ9Y240 323 aa17.52■□□□□ 0.4
PDLIM2-220ENST00000622226 MIPOL1Q8TD10 442 aa17.52■□□□□ 0.4
PDLIM2-220ENST00000622226 RGS22Q8NE09 1264 aa17.52■□□□□ 0.39
PDLIM2-220ENST00000622226 UBASH3AP57075 661 aa17.52■□□□□ 0.39
PDLIM2-220ENST00000622226 KRBA2Q6ZNG9 492 aa17.52■□□□□ 0.39
PDLIM2-220ENST00000622226 SMG6Q86US8 1419 aaKnown RBP17.52■□□□□ 0.39
PDLIM2-220ENST00000622226 C16orf71Q8IYS4 520 aaPredicted RBP17.51■□□□□ 0.39
PDLIM2-220ENST00000622226 RSRC1Q96IZ7 334 aaKnown RBP17.51■□□□□ 0.39
PDLIM2-220ENST00000622226 SMC6Q96SB8 1091 aa17.51■□□□□ 0.39
PDLIM2-220ENST00000622226 AKR1B10O60218 316 aa17.51■□□□□ 0.39
PDLIM2-220ENST00000622226 XRCC6P12956 609 aaKnown RBP eCLIP17.51■□□□□ 0.39
PDLIM2-220ENST00000622226 TRIM21P19474 475 aaKnown RBP17.51■□□□□ 0.39
PDLIM2-220ENST00000622226 FERMT2Q96AC1 680 aa17.51■□□□□ 0.39
PDLIM2-220ENST00000622226 N4BP3O15049 544 aa17.51■□□□□ 0.39
PDLIM2-220ENST00000622226 NOL3O60936 208 aaKnown RBP17.51■□□□□ 0.39
PDLIM2-220ENST00000622226 TPD52P55327 224 aaPredicted RBP17.51■□□□□ 0.39
PDLIM2-220ENST00000622226 CPLX4Q7Z7G2 160 aa17.51■□□□□ 0.39
PDLIM2-220ENST00000622226 CCDC63Q8NA47 563 aa17.51■□□□□ 0.39
PDLIM2-220ENST00000622226 LIMCH1Q9UPQ0 1083 aa17.51■□□□□ 0.39
PDLIM2-220ENST00000622226 STX6O43752 255 aa17.5■□□□□ 0.39
PDLIM2-220ENST00000622226 PDIA4P13667 645 aaKnown RBP17.5■□□□□ 0.39
PDLIM2-220ENST00000622226 SARNPP82979 210 aaKnown RBP17.5■□□□□ 0.39
PDLIM2-220ENST00000622226 DDX46Q7L014 1031 aaKnown RBP17.5■□□□□ 0.39
PDLIM2-220ENST00000622226 FLIIQ13045 1269 aa17.5■□□□□ 0.39
PDLIM2-220ENST00000622226 ANO6Q4KMQ2 910 aa17.5■□□□□ 0.39
PDLIM2-220ENST00000622226 MIS18AQ9NYP9 233 aa17.5■□□□□ 0.39
PDLIM2-220ENST00000622226 RHOXF2BP0C7M4 288 aa17.5■□□□□ 0.39
PDLIM2-220ENST00000622226 RPUSD2Q8IZ73 545 aaKnown RBP17.5■□□□□ 0.39
PDLIM2-220ENST00000622226 C8orf37Q96NL8 207 aa17.5■□□□□ 0.39
PDLIM2-220ENST00000622226 RHOXF2Q9BQY4 288 aa17.5■□□□□ 0.39
PDLIM2-220ENST00000622226 GAPVD1Q14C86 1478 aa17.5■□□□□ 0.39
PDLIM2-220ENST00000622226 PTCD1O75127 700 aaKnown RBP17.5■□□□□ 0.39
PDLIM2-220ENST00000622226 CA8P35219 290 aa17.5■□□□□ 0.39
PDLIM2-220ENST00000622226 PPARDQ03181 441 aa17.5■□□□□ 0.39
PDLIM2-220ENST00000622226 SH2B1Q9NRF2 756 aaPredicted RBP17.5■□□□□ 0.39
PDLIM2-220ENST00000622226 GOLGA8BA8MQT2 603 aa17.5■□□□□ 0.39
PDLIM2-220ENST00000622226 SPG7Q9UQ90 795 aa17.5■□□□□ 0.39
PDLIM2-220ENST00000622226 OPA1O60313 960 aa17.49■□□□□ 0.39
PDLIM2-220ENST00000622226 NLRP5P59047 1200 aa17.49■□□□□ 0.39
PDLIM2-220ENST00000622226 LRSAM1Q6UWE0 723 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms