RNA–Protein interactions for RNA: ENST00000617641.4

PCDHGC3-205, Transcript of protocadherin gamma subfamily C, 3, humanhuman

TSL 1 (best) BASIC

Gene PCDHGC3, Length 2,346 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGC3-205ENST00000617641 PLCH1Q4KWH8 1693 aa21.35■■□□□ 1.01
PCDHGC3-205ENST00000617641 PIP4K2BP78356 416 aa21.35■■□□□ 1.01
PCDHGC3-205ENST00000617641 NUTM1Q86Y26 1132 aa21.35■■□□□ 1.01
PCDHGC3-205ENST00000617641 TUBGCP6Q96RT7 1819 aa21.35■■□□□ 1.01
PCDHGC3-205ENST00000617641 HSP90AB4PQ58FF6 505 aa21.34■■□□□ 1.01
PCDHGC3-205ENST00000617641 PLBD2Q8NHP8 589 aa21.34■■□□□ 1.01
PCDHGC3-205ENST00000617641 PIGBQ92521 554 aa21.34■■□□□ 1.01
PCDHGC3-205ENST00000617641 PA2G4Q9UQ80 394 aaKnown RBP21.34■■□□□ 1.01
PCDHGC3-205ENST00000617641 AFDNP55196 1824 aaKnown RBP21.34■■□□□ 1.01
PCDHGC3-205ENST00000617641 OS9Q13438 667 aaPredicted RBP21.33■■□□□ 1.01
PCDHGC3-205ENST00000617641 ASAP1Q9ULH1 1129 aa21.33■■□□□ 1.01
PCDHGC3-205ENST00000617641 CASC1Q6TDU7 716 aa21.33■■□□□ 1
PCDHGC3-205ENST00000617641 ATP5J2-PTCD1G3V325 749 aa21.32■■□□□ 1
PCDHGC3-205ENST00000617641 TTLL7Q6ZT98 887 aa21.32■■□□□ 1
PCDHGC3-205ENST00000617641 JARID2Q92833 1246 aaPredicted RBP21.32■■□□□ 1
PCDHGC3-205ENST00000617641 ITGB4P16144 1822 aa21.32■■□□□ 1
PCDHGC3-205ENST00000617641 WNK3Q9BYP7 1800 aa21.32■■□□□ 1
PCDHGC3-205ENST00000617641 KIF2CQ99661 725 aa21.32■■□□□ 1
PCDHGC3-205ENST00000617641 NUTM2BA6NNL0 878 aaPredicted RBP21.31■■□□□ 1
PCDHGC3-205ENST00000617641 NUTM2EB1AL46 878 aaPredicted RBP21.31■■□□□ 1
PCDHGC3-205ENST00000617641 NUTM2AQ8IVF1 878 aaPredicted RBP21.31■■□□□ 1
PCDHGC3-205ENST00000617641 EXOC5O00471 708 aa21.3■■□□□ 1
PCDHGC3-205ENST00000617641 AOX1Q06278 1338 aa21.3■■□□□ 1
PCDHGC3-205ENST00000617641 EPHA10Q5JZY3 1008 aa21.3■■□□□ 1
PCDHGC3-205ENST00000617641 NRAPQ86VF7 1730 aa21.3■■□□□ 1
PCDHGC3-205ENST00000617641 EIF5BO60841 1220 aaKnown RBP21.29■■□□□ 1
PCDHGC3-205ENST00000617641 ATG3Q9NT62 314 aa21.29■■□□□ 1
PCDHGC3-205ENST00000617641 TRIM6-TRIM34B2RNG4 842 aa21.29■■□□□ 1
PCDHGC3-205ENST00000617641 TOM1O60784 492 aa21.29■■□□□ 1
PCDHGC3-205ENST00000617641 NUP188Q5SRE5 1749 aa21.28■■□□□ 1
PCDHGC3-205ENST00000617641 UBE3BQ7Z3V4 1068 aa21.28■■□□□ 1
PCDHGC3-205ENST00000617641 RILPL2Q969X0 211 aa21.28■■□□□ 1
PCDHGC3-205ENST00000617641 UNC5CLQ8IV45 518 aa21.28■■□□□ 1
PCDHGC3-205ENST00000617641 USP26Q9BXU7 913 aa21.28■■□□□ 1
PCDHGC3-205ENST00000617641 SLKQ9H2G2 1235 aaPredicted RBP21.28■■□□□ 1
PCDHGC3-205ENST00000617641 A0A087WZG4 1122 aa21.27■□□□□ 0.99
PCDHGC3-205ENST00000617641 DNAJC10Q8IXB1 793 aa21.27■□□□□ 0.99
PCDHGC3-205ENST00000617641 PI4K2BQ8TCG2 481 aa21.27■□□□□ 0.99
PCDHGC3-205ENST00000617641 RBM42Q9BTD8 480 aaKnown RBP21.27■□□□□ 0.99
PCDHGC3-205ENST00000617641 ZBTB3Q9H5J0 574 aa21.27■□□□□ 0.99
PCDHGC3-205ENST00000617641 SPATA31A1Q5TZJ5 1347 aa21.27■□□□□ 0.99
PCDHGC3-205ENST00000617641 ERC1Q8IUD2 1116 aa21.26■□□□□ 0.99
PCDHGC3-205ENST00000617641 BCL9O00512 1426 aa21.26■□□□□ 0.99
PCDHGC3-205ENST00000617641 ERC2O15083 957 aa21.26■□□□□ 0.99
PCDHGC3-205ENST00000617641 LRP6O75581 1613 aa21.26■□□□□ 0.99
PCDHGC3-205ENST00000617641 HSCBQ8IWL3 235 aa21.26■□□□□ 0.99
PCDHGC3-205ENST00000617641 KAT6BQ8WYB5 2073 aa21.25■□□□□ 0.99
PCDHGC3-205ENST00000617641 CLASRPQ8N2M8 674 aaKnown RBP21.25■□□□□ 0.99
PCDHGC3-205ENST00000617641 SPRYD3Q8NCJ5 442 aa21.25■□□□□ 0.99
PCDHGC3-205ENST00000617641 KLHDC4Q8TBB5 520 aa21.25■□□□□ 0.99
PCDHGC3-205ENST00000617641 VSIG10Q8N0Z9 540 aa21.24■□□□□ 0.99
PCDHGC3-205ENST00000617641 SYTL4Q96C24 671 aaPredicted RBP21.24■□□□□ 0.99
PCDHGC3-205ENST00000617641 SIL1Q9H173 461 aa21.24■□□□□ 0.99
PCDHGC3-205ENST00000617641 SASH1O94885 1247 aa21.24■□□□□ 0.99
PCDHGC3-205ENST00000617641 MAP4K4O95819 1239 aaPredicted RBP21.24■□□□□ 0.99
PCDHGC3-205ENST00000617641 CASP7P55210 303 aa21.24■□□□□ 0.99
PCDHGC3-205ENST00000617641 G3BP1Q13283 466 aaKnown RBP eCLIP21.24■□□□□ 0.99
PCDHGC3-205ENST00000617641 REC8O95072 547 aa21.23■□□□□ 0.99
PCDHGC3-205ENST00000617641 SNX21Q969T3 373 aa21.23■□□□□ 0.99
PCDHGC3-205ENST00000617641 ZNF330Q9Y3S2 320 aaPredicted RBP21.23■□□□□ 0.99
PCDHGC3-205ENST00000617641 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP21.23■□□□□ 0.99
PCDHGC3-205ENST00000617641 CHMLP26374 656 aa21.23■□□□□ 0.99
PCDHGC3-205ENST00000617641 TEX13AQ9BXU3 409 aaPredicted RBP21.23■□□□□ 0.99
PCDHGC3-205ENST00000617641 USP42Q9H9J4 1324 aaKnown RBP21.22■□□□□ 0.99
PCDHGC3-205ENST00000617641 ANTXR1Q9H6X2 564 aa21.22■□□□□ 0.99
PCDHGC3-205ENST00000617641 COL15A1P39059 1388 aa21.22■□□□□ 0.99
PCDHGC3-205ENST00000617641 RTL5Q5HYW3 569 aaPredicted RBP21.22■□□□□ 0.99
PCDHGC3-205ENST00000617641 ESYT1Q9BSJ8 1104 aa21.22■□□□□ 0.99
PCDHGC3-205ENST00000617641 CDCA7Q9BWT1 371 aaPredicted RBP21.22■□□□□ 0.99
PCDHGC3-205ENST00000617641 CWC25Q9NXE8 425 aaPredicted RBP21.22■□□□□ 0.99
PCDHGC3-205ENST00000617641 THRAP3Q9Y2W1 955 aaKnown RBP21.22■□□□□ 0.99
PCDHGC3-205ENST00000617641 DOT1LQ8TEK3 1739 aa21.22■□□□□ 0.99
PCDHGC3-205ENST00000617641 PRIM1P49642 420 aaKnown RBP21.21■□□□□ 0.99
PCDHGC3-205ENST00000617641 RABL6Q3YEC7 729 aaPredicted RBP21.21■□□□□ 0.99
PCDHGC3-205ENST00000617641 SLC4A9Q96Q91 983 aa21.21■□□□□ 0.99
PCDHGC3-205ENST00000617641 TJP1Q07157 1748 aa21.21■□□□□ 0.99
PCDHGC3-205ENST00000617641 UBAP1LF5GYI3 381 aa21.21■□□□□ 0.99
PCDHGC3-205ENST00000617641 H7C1W4 665 aa21.21■□□□□ 0.99
PCDHGC3-205ENST00000617641 STARD3NLO95772 234 aa21.21■□□□□ 0.99
PCDHGC3-205ENST00000617641 IFIT2P09913 472 aaKnown RBP21.21■□□□□ 0.99
PCDHGC3-205ENST00000617641 NFKBIBQ15653 356 aa21.21■□□□□ 0.99
PCDHGC3-205ENST00000617641 DDB1Q16531 1140 aa21.21■□□□□ 0.99
PCDHGC3-205ENST00000617641 AACSQ86V21 672 aa21.21■□□□□ 0.99
PCDHGC3-205ENST00000617641 AK9Q5TCS8 1911 aa21.2■□□□□ 0.99
PCDHGC3-205ENST00000617641 SPATA31A5Q5VU36 1347 aa21.2■□□□□ 0.98
PCDHGC3-205ENST00000617641 TTC41PQ6P2S7 1318 aa21.2■□□□□ 0.98
PCDHGC3-205ENST00000617641 SPATA31A7Q8IWB4 1347 aa21.2■□□□□ 0.98
PCDHGC3-205ENST00000617641 CD2BP2O95400 341 aaKnown RBP21.2■□□□□ 0.98
PCDHGC3-205ENST00000617641 CCDC9Q9Y3X0 531 aaKnown RBP21.2■□□□□ 0.98
PCDHGC3-205ENST00000617641 RFX5P48382 616 aaPredicted RBP21.2■□□□□ 0.98
PCDHGC3-205ENST00000617641 SLIT2O94813 1529 aa21.19■□□□□ 0.98
PCDHGC3-205ENST00000617641 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.19■□□□□ 0.98
PCDHGC3-205ENST00000617641 NWD2Q9ULI1 1742 aa21.19■□□□□ 0.98
PCDHGC3-205ENST00000617641 EAF2Q96CJ1 260 aaPredicted RBP21.18■□□□□ 0.98
PCDHGC3-205ENST00000617641 GLRX3O76003 335 aaKnown RBP21.18■□□□□ 0.98
PCDHGC3-205ENST00000617641 PTPN12Q05209 780 aaKnown RBP21.18■□□□□ 0.98
PCDHGC3-205ENST00000617641 CCDC191Q8NCU4 936 aa21.18■□□□□ 0.98
PCDHGC3-205ENST00000617641 COPRSQ9NQ92 184 aa21.18■□□□□ 0.98
PCDHGC3-205ENST00000617641 ECHDC1Q9NTX5 307 aa21.18■□□□□ 0.98
PCDHGC3-205ENST00000617641 FOXO4P98177 505 aa21.17■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms