RNA–Protein interactions for RNA: ENST00000616395.4

TRAPPC3-209, Transcript of trafficking protein particle complex 3, humanhuman

TSL 3 BASIC

Gene TRAPPC3, Length 1,336 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC3-209ENST00000616395 MAP2K1Q02750 393 aaPredicted RBP23.84■■□□□ 1.41
TRAPPC3-209ENST00000616395 CNBD1Q8NA66 436 aa23.84■■□□□ 1.41
TRAPPC3-209ENST00000616395 PCDH10Q9P2E7 1040 aa23.84■■□□□ 1.41
TRAPPC3-209ENST00000616395 ZNF330Q9Y3S2 320 aaPredicted RBP23.84■■□□□ 1.41
TRAPPC3-209ENST00000616395 SCN7AQ01118 1682 aa23.83■■□□□ 1.41
TRAPPC3-209ENST00000616395 WDR33Q9C0J8 1336 aaKnown RBP23.83■■□□□ 1.41
TRAPPC3-209ENST00000616395 NPHP1O15259 732 aa23.83■■□□□ 1.4
TRAPPC3-209ENST00000616395 MORC1Q86VD1 984 aa23.83■■□□□ 1.4
TRAPPC3-209ENST00000616395 MASTLQ96GX5 879 aa23.83■■□□□ 1.4
TRAPPC3-209ENST00000616395 HACL1Q9UJ83 578 aa23.83■■□□□ 1.4
TRAPPC3-209ENST00000616395 ADAMTSL1Q8N6G6 1762 aa23.82■■□□□ 1.4
TRAPPC3-209ENST00000616395 EPHX2P34913 555 aa23.82■■□□□ 1.4
TRAPPC3-209ENST00000616395 EIF4G2P78344 907 aaKnown RBP eCLIP23.82■■□□□ 1.4
TRAPPC3-209ENST00000616395 MAP1SQ66K74 1059 aaPredicted RBP23.82■■□□□ 1.4
TRAPPC3-209ENST00000616395 CNTROBQ8N137 903 aa23.82■■□□□ 1.4
TRAPPC3-209ENST00000616395 PANK3Q9H999 370 aa23.82■■□□□ 1.4
TRAPPC3-209ENST00000616395 CACNA1SQ13698 1873 aa23.81■■□□□ 1.4
TRAPPC3-209ENST00000616395 C7orf43Q8WVR3 580 aa23.81■■□□□ 1.4
TRAPPC3-209ENST00000616395 SETDB2Q96T68 719 aa23.81■■□□□ 1.4
TRAPPC3-209ENST00000616395 ABT1Q9ULW3 272 aaKnown RBP23.81■■□□□ 1.4
TRAPPC3-209ENST00000616395 UBR2Q8IWV8 1755 aa23.81■■□□□ 1.4
TRAPPC3-209ENST00000616395 RGS19P49795 217 aa23.8■■□□□ 1.4
TRAPPC3-209ENST00000616395 ST5P78524 1137 aa23.8■■□□□ 1.4
TRAPPC3-209ENST00000616395 CCDC93Q567U6 631 aa23.79■■□□□ 1.4
TRAPPC3-209ENST00000616395 TTC5Q8N0Z6 440 aa23.79■■□□□ 1.4
TRAPPC3-209ENST00000616395 ZNF277Q9NRM2 450 aaPredicted RBP23.79■■□□□ 1.4
TRAPPC3-209ENST00000616395 ARFGEF2Q9Y6D5 1785 aa23.78■■□□□ 1.4
TRAPPC3-209ENST00000616395 RNF123Q5XPI4 1314 aa23.78■■□□□ 1.4
TRAPPC3-209ENST00000616395 HMOX1P09601 288 aa23.78■■□□□ 1.4
TRAPPC3-209ENST00000616395 MTHFSDQ2M296 383 aaKnown RBP23.78■■□□□ 1.4
TRAPPC3-209ENST00000616395 PNMA8AQ86V59 439 aaPredicted RBP23.78■■□□□ 1.4
TRAPPC3-209ENST00000616395 CAMTA2O94983 1202 aa23.77■■□□□ 1.4
TRAPPC3-209ENST00000616395 FKBP4Q02790 459 aaKnown RBP eCLIP23.77■■□□□ 1.4
TRAPPC3-209ENST00000616395 ZNF496Q96IT1 587 aaPredicted RBP23.77■■□□□ 1.4
TRAPPC3-209ENST00000616395 IL6STP40189 918 aaPredicted RBP23.76■■□□□ 1.39
TRAPPC3-209ENST00000616395 OLFM4Q6UX06 510 aa23.75■■□□□ 1.39
TRAPPC3-209ENST00000616395 HEG1Q9ULI3 1381 aa23.74■■□□□ 1.39
TRAPPC3-209ENST00000616395 A1BGP04217 495 aa23.73■■□□□ 1.39
TRAPPC3-209ENST00000616395 CAPNS2Q96L46 248 aa23.73■■□□□ 1.39
TRAPPC3-209ENST00000616395 BEGAINQ9BUH8 593 aa23.73■■□□□ 1.39
TRAPPC3-209ENST00000616395 TEX13AQ9BXU3 409 aaPredicted RBP23.73■■□□□ 1.39
TRAPPC3-209ENST00000616395 DDX21Q9NR30 783 aaKnown RBP eCLIP23.73■■□□□ 1.39
TRAPPC3-209ENST00000616395 THSD7BQ9C0I4 1608 aa23.71■■□□□ 1.39
TRAPPC3-209ENST00000616395 FZD9O00144 591 aa23.71■■□□□ 1.39
TRAPPC3-209ENST00000616395 NPR1P16066 1061 aa23.71■■□□□ 1.39
TRAPPC3-209ENST00000616395 FMR1Q06787 632 aaKnown RBP eCLIP23.71■■□□□ 1.39
TRAPPC3-209ENST00000616395 GRM1Q13255 1194 aa23.71■■□□□ 1.39
TRAPPC3-209ENST00000616395 ZNF790Q6PG37 636 aa23.71■■□□□ 1.39
TRAPPC3-209ENST00000616395 PAXIP1Q6ZW49 1069 aaPredicted RBP23.71■■□□□ 1.39
TRAPPC3-209ENST00000616395 NPM2Q86SE8 214 aaKnown RBP23.71■■□□□ 1.39
TRAPPC3-209ENST00000616395 CYP4F22Q6NT55 531 aa23.7■■□□□ 1.38
TRAPPC3-209ENST00000616395 NBPF5PQ86XG9 351 aaPredicted RBP23.7■■□□□ 1.38
TRAPPC3-209ENST00000616395 DZIP3Q86Y13 1208 aaKnown RBP23.7■■□□□ 1.38
TRAPPC3-209ENST00000616395 GPC2Q8N158 579 aa23.7■■□□□ 1.38
TRAPPC3-209ENST00000616395 GPR101Q96P66 508 aaPredicted RBP23.7■■□□□ 1.38
TRAPPC3-209ENST00000616395 TSKSQ9UJT2 592 aa23.7■■□□□ 1.38
TRAPPC3-209ENST00000616395 IARSP41252 1262 aaKnown RBP23.69■■□□□ 1.38
TRAPPC3-209ENST00000616395 ECE1P42892 770 aa23.69■■□□□ 1.38
TRAPPC3-209ENST00000616395 RTKN2Q8IZC4 609 aa23.69■■□□□ 1.38
TRAPPC3-209ENST00000616395 CFAP44Q96MT7 982 aa23.68■■□□□ 1.38
TRAPPC3-209ENST00000616395 TEFQ10587 303 aa23.67■■□□□ 1.38
TRAPPC3-209ENST00000616395 DIEXFQ68CQ4 756 aaKnown RBP23.67■■□□□ 1.38
TRAPPC3-209ENST00000616395 SYNE4Q8N205 404 aa23.67■■□□□ 1.38
TRAPPC3-209ENST00000616395 BCORQ6W2J9 1755 aa23.67■■□□□ 1.38
TRAPPC3-209ENST00000616395 KLRG2A4D1S0 409 aaPredicted RBP23.66■■□□□ 1.38
TRAPPC3-209ENST00000616395 IL17REQ8NFR9 667 aa23.66■■□□□ 1.38
TRAPPC3-209ENST00000616395 FMNL2Q96PY5 1086 aa23.65■■□□□ 1.38
TRAPPC3-209ENST00000616395 GJA3Q9Y6H8 435 aa23.65■■□□□ 1.38
TRAPPC3-209ENST00000616395 PIP4K2AP48426 406 aaPredicted RBP23.64■■□□□ 1.38
TRAPPC3-209ENST00000616395 CST9Q5W186 159 aa23.64■■□□□ 1.38
TRAPPC3-209ENST00000616395 TRAF5O00463 557 aa23.63■■□□□ 1.37
TRAPPC3-209ENST00000616395 AOC2O75106 756 aa23.63■■□□□ 1.37
TRAPPC3-209ENST00000616395 MCOLN1Q9GZU1 580 aa23.63■■□□□ 1.37
TRAPPC3-209ENST00000616395 KNSTRNQ9Y448 316 aa23.63■■□□□ 1.37
TRAPPC3-209ENST00000616395 LTBP1Q14766 1721 aa23.63■■□□□ 1.37
TRAPPC3-209ENST00000616395 LMOD1P29536 600 aaPredicted RBP23.62■■□□□ 1.37
TRAPPC3-209ENST00000616395 CLEC4GQ6UXB4 293 aa23.62■■□□□ 1.37
TRAPPC3-209ENST00000616395 JDP2Q8WYK2 163 aa23.62■■□□□ 1.37
TRAPPC3-209ENST00000616395 EPS15P42566 896 aa23.61■■□□□ 1.37
TRAPPC3-209ENST00000616395 TPTE2Q6XPS3 522 aa23.61■■□□□ 1.37
TRAPPC3-209ENST00000616395 TLL2Q9Y6L7 1015 aa23.61■■□□□ 1.37
TRAPPC3-209ENST00000616395 KCNQ3O43525 872 aa23.6■■□□□ 1.37
TRAPPC3-209ENST00000616395 MAP2K2P36507 400 aa23.6■■□□□ 1.37
TRAPPC3-209ENST00000616395 EIF6P56537 245 aaKnown RBP23.6■■□□□ 1.37
TRAPPC3-209ENST00000616395 ZNF652Q9Y2D9 606 aa23.6■■□□□ 1.37
TRAPPC3-209ENST00000616395 COL4A5P29400 1685 aa23.6■■□□□ 1.37
TRAPPC3-209ENST00000616395 SNED1Q8TER0 1413 aa23.6■■□□□ 1.37
TRAPPC3-209ENST00000616395 SIPA1L3O60292 1781 aaPredicted RBP23.6■■□□□ 1.37
TRAPPC3-209ENST00000616395 TNRC18O15417 2968 aaPredicted RBP23.6■■□□□ 1.37
TRAPPC3-209ENST00000616395 FAM177BA6PVY3 158 aa23.59■■□□□ 1.37
TRAPPC3-209ENST00000616395 GNAT3A8MTJ3 354 aa23.59■■□□□ 1.37
TRAPPC3-209ENST00000616395 DIAPH1O60610 1272 aaKnown RBP23.59■■□□□ 1.37
TRAPPC3-209ENST00000616395 ALDH1B1P30837 517 aa23.59■■□□□ 1.37
TRAPPC3-209ENST00000616395 SCNN1DP51172 638 aa23.59■■□□□ 1.37
TRAPPC3-209ENST00000616395 PSMD1Q99460 953 aa23.59■■□□□ 1.37
TRAPPC3-209ENST00000616395 USP16Q9Y5T5 823 aa23.59■■□□□ 1.37
TRAPPC3-209ENST00000616395 KIF7Q2M1P5 1343 aa23.59■■□□□ 1.37
TRAPPC3-209ENST00000616395 NIP7Q9Y221 180 aaKnown RBP eCLIP23.59■■□□□ 1.37
TRAPPC3-209ENST00000616395 AMER1Q5JTC6 1135 aaPredicted RBP23.58■■□□□ 1.36
TRAPPC3-209ENST00000616395 PRAMEF22A3QJZ6 481 aa23.57■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 866.4 ms