RNA–Protein interactions for RNA: ENST00000615442.1

PVT1-223, Transcript of Pvt1 oncogene, human

Gene PVT1, Length 165 nt, Biotype misc RNA, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PVT1-223	ENST00000615442	PHAX	Q9H814	394 aa	Known RBP	13.45	□□□□□ -0.26
PVT1-223	ENST00000615442	BCL2L12	Q9HB09	334 aa		13.45	□□□□□ -0.26
PVT1-223	ENST00000615442	ZNF652	Q9Y2D9	606 aa		13.45	□□□□□ -0.26
PVT1-223	ENST00000615442	FKBP8	Q14318	412 aa		13.44	□□□□□ -0.26
PVT1-223	ENST00000615442	MRPL50	Q8N5N7	158 aa	Known RBP	13.44	□□□□□ -0.26
PVT1-223	ENST00000615442	PLBD2	Q8NHP8	589 aa		13.44	□□□□□ -0.26
PVT1-223	ENST00000615442	SSH1	Q8WYL5	1049 aa		13.44	□□□□□ -0.26
PVT1-223	ENST00000615442	SPON1	Q9HCB6	807 aa		13.44	□□□□□ -0.26
PVT1-223	ENST00000615442	CASZ1	Q86V15	1759 aa		13.43	□□□□□ -0.26
PVT1-223	ENST00000615442	TM4SF1	P30408	202 aa		13.43	□□□□□ -0.26
PVT1-223	ENST00000615442	RARS	P54136	660 aa	Known RBP	13.43	□□□□□ -0.26
PVT1-223	ENST00000615442	BRPF1	P55201	1214 aa	Predicted RBP	13.43	□□□□□ -0.26
PVT1-223	ENST00000615442	GIGYF2	Q6Y7W6	1299 aa	Known RBP	13.43	□□□□□ -0.26
PVT1-223	ENST00000615442	G2E3	Q7L622	706 aa		13.43	□□□□□ -0.26
PVT1-223	ENST00000615442	ZBTB3	Q9H5J0	574 aa		13.43	□□□□□ -0.26
PVT1-223	ENST00000615442	ATF5	Q9Y2D1	282 aa	Predicted RBP	13.43	□□□□□ -0.26
PVT1-223	ENST00000615442	TUBGCP6	Q96RT7	1819 aa		13.42	□□□□□ -0.26
PVT1-223	ENST00000615442	POLD1	P28340	1107 aa		13.42	□□□□□ -0.26
PVT1-223	ENST00000615442	FLII	Q13045	1269 aa		13.42	□□□□□ -0.26
PVT1-223	ENST00000615442	HLF	Q16534	295 aa		13.42	□□□□□ -0.26
PVT1-223	ENST00000615442	HSP90AB3P	Q58FF7	597 aa		13.42	□□□□□ -0.26
PVT1-223	ENST00000615442	MSL1	Q68DK7	614 aa		13.42	□□□□□ -0.26
PVT1-223	ENST00000615442	KSR2	Q6VAB6	950 aa		13.42	□□□□□ -0.26
PVT1-223	ENST00000615442	RIC3	Q7Z5B4	369 aa		13.42	□□□□□ -0.26
PVT1-223	ENST00000615442	SMC4	Q9NTJ3	1288 aa		13.42	□□□□□ -0.26
PVT1-223	ENST00000615442	TCIRG1	Q13488	830 aa		13.41	□□□□□ -0.26
PVT1-223	ENST00000615442	TBC1D9B	Q66K14	1250 aa		13.41	□□□□□ -0.26
PVT1-223	ENST00000615442	SETDB2	Q96T68	719 aa		13.41	□□□□□ -0.26
PVT1-223	ENST00000615442	SGIP1	Q9BQI5	828 aa		13.41	□□□□□ -0.26
PVT1-223	ENST00000615442	PTPRC	P08575	1304 aa		13.4	□□□□□ -0.26
PVT1-223	ENST00000615442	MMP10	P09238	476 aa		13.4	□□□□□ -0.26
PVT1-223	ENST00000615442	PTGER2	P43116	358 aa		13.4	□□□□□ -0.26
PVT1-223	ENST00000615442	FKBP5	Q13451	457 aa	Predicted RBP	13.4	□□□□□ -0.26
PVT1-223	ENST00000615442	NFIX	Q14938	502 aa		13.4	□□□□□ -0.26
PVT1-223	ENST00000615442	ZNF34	Q8IZ26	560 aa		13.4	□□□□□ -0.26
PVT1-223	ENST00000615442	C4A	P0C0L4	1744 aa		13.39	□□□□□ -0.27
PVT1-223	ENST00000615442	PI4KAP2	A4QPH2	592 aa		13.39	□□□□□ -0.27
PVT1-223	ENST00000615442	PI4KAP1	Q8N8J0	262 aa		13.39	□□□□□ -0.27
PVT1-223	ENST00000615442	METTL22	Q9BUU2	404 aa	Predicted RBP	13.39	□□□□□ -0.27
PVT1-223	ENST00000615442	BCL2L13	Q9BXK5	485 aa		13.39	□□□□□ -0.27
PVT1-223	ENST00000615442	NIP7	Q9Y221	180 aa	Known RBP eCLIP	13.39	□□□□□ -0.27
PVT1-223	ENST00000615442	MAP3K2	Q9Y2U5	619 aa		13.39	□□□□□ -0.27
PVT1-223	ENST00000615442	PARP3	Q9Y6F1	533 aa		13.39	□□□□□ -0.27
PVT1-223	ENST00000615442	ATP10D	Q9P241	1426 aa		13.39	□□□□□ -0.27
PVT1-223	ENST00000615442	POLRMT	O00411	1230 aa	Known RBP	13.38	□□□□□ -0.27
PVT1-223	ENST00000615442	TRIM28	Q13263	835 aa	Known RBP	13.38	□□□□□ -0.27
PVT1-223	ENST00000615442	PARP10	Q53GL7	1025 aa		13.38	□□□□□ -0.27
PVT1-223	ENST00000615442	BICDL1	Q6ZP65	573 aa		13.38	□□□□□ -0.27
PVT1-223	ENST00000615442	ARHGAP45	Q92619	1136 aa		13.38	□□□□□ -0.27
PVT1-223	ENST00000615442	ADCY9	O60503	1353 aa		13.37	□□□□□ -0.27
PVT1-223	ENST00000615442	CARMIL3	Q8ND23	1372 aa		13.37	□□□□□ -0.27
PVT1-223	ENST00000615442	IPO8	O15397	1037 aa	Known RBP	13.37	□□□□□ -0.27
PVT1-223	ENST00000615442	BCAR3	O75815	825 aa		13.37	□□□□□ -0.27
PVT1-223	ENST00000615442	SERPINB2	P05120	415 aa		13.37	□□□□□ -0.27
PVT1-223	ENST00000615442	DDR1	Q08345	913 aa		13.37	□□□□□ -0.27
PVT1-223	ENST00000615442	NEXN	Q0ZGT2	675 aa		13.37	□□□□□ -0.27
PVT1-223	ENST00000615442	TPTE2	Q6XPS3	522 aa		13.37	□□□□□ -0.27
PVT1-223	ENST00000615442	DNAAF4	Q8WXU2	420 aa		13.37	□□□□□ -0.27
PVT1-223	ENST00000615442	ISCA1	Q9BUE6	129 aa		13.37	□□□□□ -0.27
PVT1-223	ENST00000615442	RCAN3	Q9UKA8	241 aa		13.37	□□□□□ -0.27
PVT1-223	ENST00000615442	NOB1	Q9ULX3	412 aa	Known RBP	13.37	□□□□□ -0.27
PVT1-223	ENST00000615442	SCN7A	Q01118	1682 aa		13.37	□□□□□ -0.27
PVT1-223	ENST00000615442	KIF16B	Q96L93	1317 aa		13.37	□□□□□ -0.27
PVT1-223	ENST00000615442	PPP1R42	Q7Z4L9	355 aa		13.36	□□□□□ -0.27
PVT1-223	ENST00000615442	MYD88	Q99836	296 aa		13.36	□□□□□ -0.27
PVT1-223	ENST00000615442	API5	Q9BZZ5	524 aa	Known RBP	13.36	□□□□□ -0.27
PVT1-223	ENST00000615442	NYX	Q9GZU5	481 aa		13.36	□□□□□ -0.27
PVT1-223	ENST00000615442	COL24A1	Q17RW2	1714 aa		13.36	□□□□□ -0.27
PVT1-223	ENST00000615442	GPT	P24298	496 aa		13.35	□□□□□ -0.27
PVT1-223	ENST00000615442	SUSD4	Q5VX71	490 aa		13.35	□□□□□ -0.27
PVT1-223	ENST00000615442	NLRP10	Q86W26	655 aa		13.35	□□□□□ -0.27
PVT1-223	ENST00000615442	NBPF5P	Q86XG9	351 aa	Predicted RBP	13.35	□□□□□ -0.27
PVT1-223	ENST00000615442	CCDC191	Q8NCU4	936 aa		13.35	□□□□□ -0.27
PVT1-223	ENST00000615442	UBN2	Q6ZU65	1347 aa		13.35	□□□□□ -0.27
PVT1-223	ENST00000615442	BCOR	Q6W2J9	1755 aa		13.35	□□□□□ -0.27
PVT1-223	ENST00000615442		F6X3S4	739 aa		13.34	□□□□□ -0.27
PVT1-223	ENST00000615442	ATP5J2-PTCD1	G3V325	749 aa		13.34	□□□□□ -0.27
PVT1-223	ENST00000615442	LINS1	Q8NG48	757 aa		13.34	□□□□□ -0.27
PVT1-223	ENST00000615442	UTP14A	Q9BVJ6	771 aa	Known RBP	13.34	□□□□□ -0.27
PVT1-223	ENST00000615442	RNF123	Q5XPI4	1314 aa		13.34	□□□□□ -0.27
PVT1-223	ENST00000615442	IBTK	Q9P2D0	1353 aa	Predicted RBP	13.33	□□□□□ -0.27
PVT1-223	ENST00000615442	IGKV5-2	P06315	115 aa		13.33	□□□□□ -0.28
PVT1-223	ENST00000615442	BEND3	Q5T5X7	828 aa		13.33	□□□□□ -0.28
PVT1-223	ENST00000615442	ZKSCAN2	Q63HK3	967 aa		13.33	□□□□□ -0.28
PVT1-223	ENST00000615442	PRR5L	Q6MZQ0	368 aa		13.33	□□□□□ -0.28
PVT1-223	ENST00000615442	CNBD1	Q8NA66	436 aa		13.33	□□□□□ -0.28
PVT1-223	ENST00000615442	FRAT1	Q92837	279 aa	Predicted RBP	13.33	□□□□□ -0.28
PVT1-223	ENST00000615442	CWC25	Q9NXE8	425 aa	Predicted RBP	13.33	□□□□□ -0.28
PVT1-223	ENST00000615442	PPP1R1B	Q9UD71	204 aa	Predicted RBP	13.33	□□□□□ -0.28
PVT1-223	ENST00000615442	CD2AP	Q9Y5K6	639 aa		13.33	□□□□□ -0.28
PVT1-223	ENST00000615442	NEURL1B	A8MQ27	555 aa		13.32	□□□□□ -0.28
PVT1-223	ENST00000615442	NPHP1	O15259	732 aa		13.32	□□□□□ -0.28
PVT1-223	ENST00000615442	ALDH1L1	O75891	902 aa		13.32	□□□□□ -0.28
PVT1-223	ENST00000615442	NTSR2	O95665	410 aa		13.32	□□□□□ -0.28
PVT1-223	ENST00000615442	GTF2E1	P29083	439 aa	Predicted RBP	13.32	□□□□□ -0.28
PVT1-223	ENST00000615442	ST5	P78524	1137 aa		13.32	□□□□□ -0.28
PVT1-223	ENST00000615442	SLC10A5	Q5PT55	438 aa		13.32	□□□□□ -0.28
PVT1-223	ENST00000615442	SLC4A10	Q6U841	1118 aa		13.32	□□□□□ -0.28
PVT1-223	ENST00000615442	ATF7IP	Q6VMQ6	1270 aa		13.32	□□□□□ -0.28
PVT1-223	ENST00000615442	SRCIN1	Q9C0H9	1055 aa		13.32	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms