RNA–Protein interactions for RNA: ENST00000612558.4

CCDC47-207, Transcript of coiled-coil domain containing 47, humanhuman

TSL 5 BASIC

Gene CCDC47, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-207ENST00000612558 SLC52A2Q9HAB3 445 aa11.31□□□□□ -0.6
CCDC47-207ENST00000612558 KDM6AO15550 1401 aaPredicted RBP11.31□□□□□ -0.6
CCDC47-207ENST00000612558 CERKQ8TCT0 537 aa11.3□□□□□ -0.6
CCDC47-207ENST00000612558 SIPA1L3O60292 1781 aaPredicted RBP11.3□□□□□ -0.6
CCDC47-207ENST00000612558 KCNQ3O43525 872 aa11.29□□□□□ -0.6
CCDC47-207ENST00000612558 ADAMTS2O95450 1211 aa11.28□□□□□ -0.6
CCDC47-207ENST00000612558 NKX1-1Q15270 411 aaPredicted RBP11.28□□□□□ -0.6
CCDC47-207ENST00000612558 HDGFL1Q5TGJ6 251 aa11.28□□□□□ -0.6
CCDC47-207ENST00000612558 NFATC2IPQ8NCF5 419 aa11.28□□□□□ -0.6
CCDC47-207ENST00000612558 ZBTB40Q9NUA8 1239 aa11.28□□□□□ -0.6
CCDC47-207ENST00000612558 USP35Q9P2H5 1018 aa11.28□□□□□ -0.6
CCDC47-207ENST00000612558 PCDHB15Q9Y5E8 787 aa11.28□□□□□ -0.6
CCDC47-207ENST00000612558 HEG1Q9ULI3 1381 aa11.28□□□□□ -0.6
CCDC47-207ENST00000612558 ZBTB7BO15156 539 aaPredicted RBP11.28□□□□□ -0.6
CCDC47-207ENST00000612558 IGHDP01880 384 aa11.28□□□□□ -0.6
CCDC47-207ENST00000612558 INTS3Q68E01 1043 aaKnown RBP11.28□□□□□ -0.6
CCDC47-207ENST00000612558 ZNF790Q6PG37 636 aa11.28□□□□□ -0.6
CCDC47-207ENST00000612558 MRC1P22897 1456 aa11.27□□□□□ -0.6
CCDC47-207ENST00000612558 NUTM2BA6NNL0 878 aaPredicted RBP11.27□□□□□ -0.61
CCDC47-207ENST00000612558 NUTM2EB1AL46 878 aaPredicted RBP11.27□□□□□ -0.61
CCDC47-207ENST00000612558 ERVV-2B6SEH9 535 aa11.27□□□□□ -0.61
CCDC47-207ENST00000612558 GIGYF1O75420 1035 aaPredicted RBP11.27□□□□□ -0.61
CCDC47-207ENST00000612558 CABP4P57796 275 aa11.27□□□□□ -0.61
CCDC47-207ENST00000612558 G2E3Q7L622 706 aa11.27□□□□□ -0.61
CCDC47-207ENST00000612558 NUTM2AQ8IVF1 878 aaPredicted RBP11.27□□□□□ -0.61
CCDC47-207ENST00000612558 RWDD1Q9H446 243 aaPredicted RBP11.27□□□□□ -0.61
CCDC47-207ENST00000612558 HCSTQ9UBK5 93 aa11.27□□□□□ -0.61
CCDC47-207ENST00000612558 RGS12O14924 1447 aa11.26□□□□□ -0.61
CCDC47-207ENST00000612558 EIF2S2P20042 333 aaKnown RBP11.26□□□□□ -0.61
CCDC47-207ENST00000612558 FLIIQ13045 1269 aa11.26□□□□□ -0.61
CCDC47-207ENST00000612558 DDX54Q8TDD1 881 aaKnown RBP11.26□□□□□ -0.61
CCDC47-207ENST00000612558 NECTIN2Q92692 538 aa11.26□□□□□ -0.61
CCDC47-207ENST00000612558 JCADQ9P266 1359 aa11.26□□□□□ -0.61
CCDC47-207ENST00000612558 ARHGAP33O14559 1287 aa11.25□□□□□ -0.61
CCDC47-207ENST00000612558 CDCA7Q9BWT1 371 aaPredicted RBP11.25□□□□□ -0.61
CCDC47-207ENST00000612558 THRAP3Q9Y2W1 955 aaKnown RBP11.25□□□□□ -0.61
CCDC47-207ENST00000612558 DISP2A7MBM2 1401 aa11.25□□□□□ -0.61
CCDC47-207ENST00000612558 PLCH1Q4KWH8 1693 aa11.25□□□□□ -0.61
CCDC47-207ENST00000612558 RGL2O15211 777 aa11.24□□□□□ -0.61
CCDC47-207ENST00000612558 CCT4P50991 539 aaKnown RBP11.24□□□□□ -0.61
CCDC47-207ENST00000612558 SLC39A6Q13433 755 aa11.24□□□□□ -0.61
CCDC47-207ENST00000612558 FKBP5Q13451 457 aaPredicted RBP11.24□□□□□ -0.61
CCDC47-207ENST00000612558 HDAC1Q13547 482 aaPredicted RBP11.24□□□□□ -0.61
CCDC47-207ENST00000612558 TTC5Q8N0Z6 440 aa11.24□□□□□ -0.61
CCDC47-207ENST00000612558 TSHZ2Q9NRE2 1034 aa11.24□□□□□ -0.61
CCDC47-207ENST00000612558 DBF4Q9UBU7 674 aaPredicted RBP11.24□□□□□ -0.61
CCDC47-207ENST00000612558 SHANK3Q9BYB0 1731 aa11.24□□□□□ -0.61
CCDC47-207ENST00000612558 EXOC5O00471 708 aa11.24□□□□□ -0.61
CCDC47-207ENST00000612558 CHPF2Q9P2E5 772 aa11.24□□□□□ -0.61
CCDC47-207ENST00000612558 SPATA31A1Q5TZJ5 1347 aa11.23□□□□□ -0.61
CCDC47-207ENST00000612558 SLIT2O94813 1529 aa11.23□□□□□ -0.61
CCDC47-207ENST00000612558 ZNF496Q96IT1 587 aaPredicted RBP11.23□□□□□ -0.61
CCDC47-207ENST00000612558 FMNL2Q96PY5 1086 aa11.23□□□□□ -0.61
CCDC47-207ENST00000612558 NWD2Q9ULI1 1742 aa11.22□□□□□ -0.61
CCDC47-207ENST00000612558 F6X3S4 739 aa11.22□□□□□ -0.61
CCDC47-207ENST00000612558 TBC1D12O60347 775 aa11.22□□□□□ -0.61
CCDC47-207ENST00000612558 SNRPA1P09661 255 aaKnown RBP11.22□□□□□ -0.61
CCDC47-207ENST00000612558 SLC4A10Q6U841 1118 aa11.22□□□□□ -0.61
CCDC47-207ENST00000612558 PHAXQ9H814 394 aaKnown RBP11.22□□□□□ -0.61
CCDC47-207ENST00000612558 NRAPQ86VF7 1730 aa11.22□□□□□ -0.61
CCDC47-207ENST00000612558 SPATA31A5Q5VU36 1347 aa11.22□□□□□ -0.61
CCDC47-207ENST00000612558 SPATA31A6Q5VVP1 1343 aa11.22□□□□□ -0.61
CCDC47-207ENST00000612558 SPATA31A7Q8IWB4 1347 aa11.22□□□□□ -0.61
CCDC47-207ENST00000612558 PRAMEF22A3QJZ6 481 aa11.21□□□□□ -0.61
CCDC47-207ENST00000612558 HYPKQ9NX55 129 aa11.21□□□□□ -0.61
CCDC47-207ENST00000612558 ADGRD1Q6QNK2 874 aa11.2□□□□□ -0.62
CCDC47-207ENST00000612558 BARGINQ6ZT62 677 aa11.2□□□□□ -0.62
CCDC47-207ENST00000612558 UNC5CLQ8IV45 518 aa11.2□□□□□ -0.62
CCDC47-207ENST00000612558 NGLY1Q96IV0 654 aa11.2□□□□□ -0.62
CCDC47-207ENST00000612558 DDX21Q9NR30 783 aaKnown RBP eCLIP11.2□□□□□ -0.62
CCDC47-207ENST00000612558 PXDNLA1KZ92 1463 aa11.2□□□□□ -0.62
CCDC47-207ENST00000612558 POTEEQ6S8J3 1075 aa11.2□□□□□ -0.62
CCDC47-207ENST00000612558 PTCD2Q8WV60 388 aaKnown RBP11.2□□□□□ -0.62
CCDC47-207ENST00000612558 C8orf37Q96NL8 207 aa11.2□□□□□ -0.62
CCDC47-207ENST00000612558 TMOD3Q9NYL9 352 aa11.2□□□□□ -0.62
CCDC47-207ENST00000612558 WNK3Q9BYP7 1800 aa11.19□□□□□ -0.62
CCDC47-207ENST00000612558 TK2O00142 265 aa11.19□□□□□ -0.62
CCDC47-207ENST00000612558 ANXA1P04083 346 aa11.19□□□□□ -0.62
CCDC47-207ENST00000612558 PDIA6Q15084 440 aa11.19□□□□□ -0.62
CCDC47-207ENST00000612558 DDB1Q16531 1140 aa11.19□□□□□ -0.62
CCDC47-207ENST00000612558 FNBP4Q8N3X1 1017 aaPredicted RBP11.19□□□□□ -0.62
CCDC47-207ENST00000612558 C1orf115Q9H7X2 142 aa11.19□□□□□ -0.62
CCDC47-207ENST00000612558 PLA2G2EQ9NZK7 142 aa11.19□□□□□ -0.62
CCDC47-207ENST00000612558 CCDC9Q9Y3X0 531 aaKnown RBP11.19□□□□□ -0.62
CCDC47-207ENST00000612558 USP16Q9Y5T5 823 aa11.19□□□□□ -0.62
CCDC47-207ENST00000612558 TNS2Q63HR2 1409 aa11.18□□□□□ -0.62
CCDC47-207ENST00000612558 KAT6BQ8WYB5 2073 aa11.18□□□□□ -0.62
CCDC47-207ENST00000612558 PI4KAP2A4QPH2 592 aa11.18□□□□□ -0.62
CCDC47-207ENST00000612558 VPS72Q15906 364 aa11.18□□□□□ -0.62
CCDC47-207ENST00000612558 PROSER3Q2NL68 480 aa11.18□□□□□ -0.62
CCDC47-207ENST00000612558 RPAP2Q8IXW5 612 aaPredicted RBP11.18□□□□□ -0.62
CCDC47-207ENST00000612558 SMC5Q8IY18 1101 aa11.18□□□□□ -0.62
CCDC47-207ENST00000612558 PI4KAP1Q8N8J0 262 aa11.18□□□□□ -0.62
CCDC47-207ENST00000612558 DNAAF4Q8WXU2 420 aa11.18□□□□□ -0.62
CCDC47-207ENST00000612558 MEIS3Q99687 375 aa11.18□□□□□ -0.62
CCDC47-207ENST00000612558 PPP1R37O75864 691 aa11.17□□□□□ -0.62
CCDC47-207ENST00000612558 DDX58O95786 925 aaKnown RBP11.17□□□□□ -0.62
CCDC47-207ENST00000612558 GNAI3P08754 354 aa11.17□□□□□ -0.62
CCDC47-207ENST00000612558 HSPA1LP34931 641 aa11.17□□□□□ -0.62
CCDC47-207ENST00000612558 FOXK1P85037 733 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms