RNA–Protein interactions for RNA: ENST00000610489.1

SYNE1-240, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 1,754 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-240ENST00000610489 A0A087WZG4 1122 aa13.27□□□□□ -0.29
SYNE1-240ENST00000610489 COL23A1Q86Y22 540 aaPredicted RBP13.27□□□□□ -0.29
SYNE1-240ENST00000610489 ARHGEF1Q92888 912 aaKnown RBP13.27□□□□□ -0.29
SYNE1-240ENST00000610489 ARFGEF2Q9Y6D5 1785 aa13.26□□□□□ -0.29
SYNE1-240ENST00000610489 ALDH1L2Q3SY69 923 aa13.26□□□□□ -0.29
SYNE1-240ENST00000610489 SSH1Q8WYL5 1049 aa13.26□□□□□ -0.29
SYNE1-240ENST00000610489 PSDA5PKW4 1024 aaPredicted RBP13.25□□□□□ -0.29
SYNE1-240ENST00000610489 RFC4P35249 363 aa13.25□□□□□ -0.29
SYNE1-240ENST00000610489 RARSP54136 660 aaKnown RBP13.25□□□□□ -0.29
SYNE1-240ENST00000610489 TTLL7Q6ZT98 887 aa13.25□□□□□ -0.29
SYNE1-240ENST00000610489 COPS6Q7L5N1 327 aa13.25□□□□□ -0.29
SYNE1-240ENST00000610489 DZIP3Q86Y13 1208 aaKnown RBP13.25□□□□□ -0.29
SYNE1-240ENST00000610489 XAGE3Q8WTP9 111 aa13.25□□□□□ -0.29
SYNE1-240ENST00000610489 BCL2L13Q9BXK5 485 aa13.25□□□□□ -0.29
SYNE1-240ENST00000610489 PDGFDQ9GZP0 370 aaPredicted RBP13.25□□□□□ -0.29
SYNE1-240ENST00000610489 PHAXQ9H814 394 aaKnown RBP13.25□□□□□ -0.29
SYNE1-240ENST00000610489 NARFQ9UHQ1 456 aa13.25□□□□□ -0.29
SYNE1-240ENST00000610489 TBC1D2BQ9UPU7 963 aa13.25□□□□□ -0.29
SYNE1-240ENST00000610489 ANKRD36CQ5JPF3 1778 aa13.24□□□□□ -0.29
SYNE1-240ENST00000610489 USP42Q9H9J4 1324 aaKnown RBP13.24□□□□□ -0.29
SYNE1-240ENST00000610489 G2E3Q7L622 706 aa13.24□□□□□ -0.29
SYNE1-240ENST00000610489 MRPL50Q8N5N7 158 aaKnown RBP13.24□□□□□ -0.29
SYNE1-240ENST00000610489 ARXQ96QS3 562 aa13.24□□□□□ -0.29
SYNE1-240ENST00000610489 SMC4Q9NTJ3 1288 aa13.24□□□□□ -0.29
SYNE1-240ENST00000610489 SRP68Q9UHB9 627 aaKnown RBP13.24□□□□□ -0.29
SYNE1-240ENST00000610489 ZPR1O75312 459 aa13.23□□□□□ -0.29
SYNE1-240ENST00000610489 CAMTA2O94983 1202 aa13.23□□□□□ -0.29
SYNE1-240ENST00000610489 AIMP1Q12904 312 aaKnown RBP13.23□□□□□ -0.29
SYNE1-240ENST00000610489 KIF6Q6ZMV9 814 aa13.23□□□□□ -0.29
SYNE1-240ENST00000610489 COL24A1Q17RW2 1714 aa13.23□□□□□ -0.29
SYNE1-240ENST00000610489 MAP3K15Q6ZN16 1313 aa13.23□□□□□ -0.29
SYNE1-240ENST00000610489 FLIIQ13045 1269 aa13.22□□□□□ -0.29
SYNE1-240ENST00000610489 BRPF1P55201 1214 aaPredicted RBP13.22□□□□□ -0.29
SYNE1-240ENST00000610489 USPL1Q5W0Q7 1092 aa13.22□□□□□ -0.29
SYNE1-240ENST00000610489 SLC16A10Q8TF71 515 aa13.22□□□□□ -0.29
SYNE1-240ENST00000610489 ERVV-1B6SEH8 477 aa13.21□□□□□ -0.29
SYNE1-240ENST00000610489 RGL2O15211 777 aa13.21□□□□□ -0.29
SYNE1-240ENST00000610489 GYS1P13807 737 aa13.21□□□□□ -0.29
SYNE1-240ENST00000610489 ANKRD13DQ6ZTN6 518 aa13.21□□□□□ -0.29
SYNE1-240ENST00000610489 ZBTB3Q9H5J0 574 aa13.21□□□□□ -0.29
SYNE1-240ENST00000610489 BCL2L12Q9HB09 334 aa13.21□□□□□ -0.29
SYNE1-240ENST00000610489 RCAN3Q9UKA8 241 aa13.21□□□□□ -0.29
SYNE1-240ENST00000610489 BCAR3O75815 825 aa13.2□□□□□ -0.3
SYNE1-240ENST00000610489 DDX58O95786 925 aaKnown RBP13.2□□□□□ -0.3
SYNE1-240ENST00000610489 FKBP5Q13451 457 aaPredicted RBP13.2□□□□□ -0.3
SYNE1-240ENST00000610489 PLBD2Q8NHP8 589 aa13.2□□□□□ -0.3
SYNE1-240ENST00000610489 KIF16BQ96L93 1317 aa13.2□□□□□ -0.3
SYNE1-240ENST00000610489 ADCY9O60503 1353 aa13.2□□□□□ -0.3
SYNE1-240ENST00000610489 N4BP2Q86UW6 1770 aaPredicted RBP13.2□□□□□ -0.3
SYNE1-240ENST00000610489 AFDNP55196 1824 aaKnown RBP13.2□□□□□ -0.3
SYNE1-240ENST00000610489 HLFQ16534 295 aa13.2□□□□□ -0.3
SYNE1-240ENST00000610489 CLEC4GQ6UXB4 293 aa13.2□□□□□ -0.3
SYNE1-240ENST00000610489 ZNF652Q9Y2D9 606 aa13.2□□□□□ -0.3
SYNE1-240ENST00000610489 PTPRCP08575 1304 aa13.2□□□□□ -0.3
SYNE1-240ENST00000610489 PI4KAP2A4QPH2 592 aa13.19□□□□□ -0.3
SYNE1-240ENST00000610489 KSR2Q6VAB6 950 aa13.19□□□□□ -0.3
SYNE1-240ENST00000610489 GIGYF2Q6Y7W6 1299 aaKnown RBP13.19□□□□□ -0.3
SYNE1-240ENST00000610489 RIC3Q7Z5B4 369 aa13.19□□□□□ -0.3
SYNE1-240ENST00000610489 PI4KAP1Q8N8J0 262 aa13.19□□□□□ -0.3
SYNE1-240ENST00000610489 ATP10DQ9P241 1426 aa13.19□□□□□ -0.3
SYNE1-240ENST00000610489 ZBTB7AO95365 584 aa13.18□□□□□ -0.3
SYNE1-240ENST00000610489 MSL1Q68DK7 614 aa13.18□□□□□ -0.3
SYNE1-240ENST00000610489 NLGN1Q8N2Q7 840 aa13.18□□□□□ -0.3
SYNE1-240ENST00000610489 MTFR1LQ9H019 292 aa13.18□□□□□ -0.3
SYNE1-240ENST00000610489 NOB1Q9ULX3 412 aaKnown RBP13.18□□□□□ -0.3
SYNE1-240ENST00000610489 MAP3K2Q9Y2U5 619 aa13.18□□□□□ -0.3
SYNE1-240ENST00000610489 POLA2Q14181 598 aa13.17□□□□□ -0.3
SYNE1-240ENST00000610489 HSP90AB3PQ58FF7 597 aa13.17□□□□□ -0.3
SYNE1-240ENST00000610489 TBC1D9BQ66K14 1250 aa13.17□□□□□ -0.3
SYNE1-240ENST00000610489 F6X3S4 739 aa13.16□□□□□ -0.3
SYNE1-240ENST00000610489 TCIRG1Q13488 830 aa13.16□□□□□ -0.3
SYNE1-240ENST00000610489 NFIXQ14938 502 aa13.16□□□□□ -0.3
SYNE1-240ENST00000610489 DNAAF4Q8WXU2 420 aa13.16□□□□□ -0.3
SYNE1-240ENST00000610489 ARHGAP45Q92619 1136 aa13.16□□□□□ -0.3
SYNE1-240ENST00000610489 FRAT1Q92837 279 aaPredicted RBP13.16□□□□□ -0.3
SYNE1-240ENST00000610489 METTL22Q9BUU2 404 aaPredicted RBP13.16□□□□□ -0.3
SYNE1-240ENST00000610489 PXDNLA1KZ92 1463 aa13.16□□□□□ -0.3
SYNE1-240ENST00000610489 NRXN2Q9P2S2 1712 aa13.16□□□□□ -0.3
SYNE1-240ENST00000610489 IPO8O15397 1037 aaKnown RBP13.15□□□□□ -0.3
SYNE1-240ENST00000610489 BICDL1Q6ZP65 573 aa13.15□□□□□ -0.3
SYNE1-240ENST00000610489 ZNF34Q8IZ26 560 aa13.15□□□□□ -0.3
SYNE1-240ENST00000610489 NIP7Q9Y221 180 aaKnown RBP eCLIP13.15□□□□□ -0.3
SYNE1-240ENST00000610489 CARMIL3Q8ND23 1372 aa13.15□□□□□ -0.3
SYNE1-240ENST00000610489 SRCAPQ6ZRS2 3230 aa13.15□□□□□ -0.31
SYNE1-240ENST00000610489 MMP10P09238 476 aa13.15□□□□□ -0.31
SYNE1-240ENST00000610489 GPTP24298 496 aa13.15□□□□□ -0.31
SYNE1-240ENST00000610489 TM4SF1P30408 202 aa13.15□□□□□ -0.31
SYNE1-240ENST00000610489 SETDB2Q96T68 719 aa13.15□□□□□ -0.31
SYNE1-240ENST00000610489 MYD88Q99836 296 aa13.15□□□□□ -0.31
SYNE1-240ENST00000610489 ISCA1Q9BUE6 129 aa13.15□□□□□ -0.31
SYNE1-240ENST00000610489 API5Q9BZZ5 524 aaKnown RBP13.15□□□□□ -0.31
SYNE1-240ENST00000610489 UBN2Q6ZU65 1347 aa13.14□□□□□ -0.31
SYNE1-240ENST00000610489 TRIM27P14373 513 aa13.14□□□□□ -0.31
SYNE1-240ENST00000610489 DDR1Q08345 913 aa13.14□□□□□ -0.31
SYNE1-240ENST00000610489 NEXNQ0ZGT2 675 aa13.14□□□□□ -0.31
SYNE1-240ENST00000610489 ZKSCAN2Q63HK3 967 aa13.14□□□□□ -0.31
SYNE1-240ENST00000610489 ATF7IPQ6VMQ6 1270 aa13.14□□□□□ -0.31
SYNE1-240ENST00000610489 ATP5J2-PTCD1G3V325 749 aa13.13□□□□□ -0.31
SYNE1-240ENST00000610489 POLRMTO00411 1230 aaKnown RBP13.13□□□□□ -0.31
SYNE1-240ENST00000610489 SGIP1Q9BQI5 828 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms