RNA–Protein interactions for RNA: ENST00000600970.5

USE1-208, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 5

Gene USE1, Length 826 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-208ENST00000600970 U2SURPO15042 1029 aaKnown RBP22.61■■□□□ 1.21
USE1-208ENST00000600970 NPHP1O15259 732 aa22.61■■□□□ 1.21
USE1-208ENST00000600970 SRGNP10124 158 aa22.61■■□□□ 1.21
USE1-208ENST00000600970 ST5P78524 1137 aa22.61■■□□□ 1.21
USE1-208ENST00000600970 PRPF40BQ6NWY9 871 aaKnown RBP22.61■■□□□ 1.21
USE1-208ENST00000600970 NPM2Q86SE8 214 aaKnown RBP22.6■■□□□ 1.21
USE1-208ENST00000600970 MASTLQ96GX5 879 aa22.6■■□□□ 1.21
USE1-208ENST00000600970 MKRN1Q9UHC7 482 aaKnown RBP22.6■■□□□ 1.21
USE1-208ENST00000600970 KCNQ3O43525 872 aa22.59■■□□□ 1.21
USE1-208ENST00000600970 SOGA3Q5TF21 947 aa22.59■■□□□ 1.21
USE1-208ENST00000600970 DZIP3Q86Y13 1208 aaKnown RBP22.59■■□□□ 1.21
USE1-208ENST00000600970 CEMIPQ8WUJ3 1361 aa22.59■■□□□ 1.21
USE1-208ENST00000600970 SCN4AP35499 1836 aa22.57■■□□□ 1.2
USE1-208ENST00000600970 BTBD11A6QL63 1104 aa22.56■■□□□ 1.2
USE1-208ENST00000600970 PIP4K2AP48426 406 aaPredicted RBP22.56■■□□□ 1.2
USE1-208ENST00000600970 USP16Q9Y5T5 823 aa22.56■■□□□ 1.2
USE1-208ENST00000600970 C7orf43Q8WVR3 580 aa22.55■■□□□ 1.2
USE1-208ENST00000600970 NPC1L1Q9UHC9 1359 aa22.54■■□□□ 1.2
USE1-208ENST00000600970 IQCA1LA6NCM1 817 aa22.54■■□□□ 1.2
USE1-208ENST00000600970 CNGB1Q14028 1251 aaPredicted RBP22.54■■□□□ 1.2
USE1-208ENST00000600970 L3MBTL3Q96JM7 780 aaPredicted RBP22.54■■□□□ 1.2
USE1-208ENST00000600970 PASKQ96RG2 1323 aa22.54■■□□□ 1.2
USE1-208ENST00000600970 CNTNAP1P78357 1384 aa22.53■■□□□ 1.2
USE1-208ENST00000600970 PRAMEF22A3QJZ6 481 aa22.53■■□□□ 1.2
USE1-208ENST00000600970 CCDC93Q567U6 631 aa22.53■■□□□ 1.2
USE1-208ENST00000600970 CLEC4GQ6UXB4 293 aa22.53■■□□□ 1.2
USE1-208ENST00000600970 LDHDQ86WU2 507 aa22.53■■□□□ 1.2
USE1-208ENST00000600970 NBPF5PQ86XG9 351 aaPredicted RBP22.53■■□□□ 1.2
USE1-208ENST00000600970 CCER1Q8TC90 406 aaPredicted RBP22.53■■□□□ 1.2
USE1-208ENST00000600970 PHACTR3Q96KR7 559 aa22.53■■□□□ 1.2
USE1-208ENST00000600970 TAF1DQ9H5J8 278 aaPredicted RBP22.53■■□□□ 1.2
USE1-208ENST00000600970 FOXN1O15353 648 aa22.51■■□□□ 1.19
USE1-208ENST00000600970 PRKAR2BP31323 418 aa22.51■■□□□ 1.19
USE1-208ENST00000600970 NPR1P16066 1061 aa22.5■■□□□ 1.19
USE1-208ENST00000600970 FKBP4Q02790 459 aaKnown RBP eCLIP22.5■■□□□ 1.19
USE1-208ENST00000600970 RSPH6AQ9H0K4 717 aa22.5■■□□□ 1.19
USE1-208ENST00000600970 ZNF652Q9Y2D9 606 aa22.5■■□□□ 1.19
USE1-208ENST00000600970 ADAMTSL1Q8N6G6 1762 aa22.49■■□□□ 1.19
USE1-208ENST00000600970 KLRG2A4D1S0 409 aaPredicted RBP22.49■■□□□ 1.19
USE1-208ENST00000600970 ZNF277Q9NRM2 450 aaPredicted RBP22.49■■□□□ 1.19
USE1-208ENST00000600970 ZNF541Q9H0D2 1346 aa22.49■■□□□ 1.19
USE1-208ENST00000600970 ITGBL1O95965 494 aaPredicted RBP22.48■■□□□ 1.19
USE1-208ENST00000600970 SNRPA1P09661 255 aaKnown RBP22.48■■□□□ 1.19
USE1-208ENST00000600970 OLFM4Q6UX06 510 aa22.48■■□□□ 1.19
USE1-208ENST00000600970 TMEM88BA6NKF7 163 aa22.47■■□□□ 1.19
USE1-208ENST00000600970 EAPPQ56P03 285 aaPredicted RBP22.47■■□□□ 1.19
USE1-208ENST00000600970 TPTE2Q6XPS3 522 aa22.47■■□□□ 1.19
USE1-208ENST00000600970 VEGFBP49765 207 aa22.46■■□□□ 1.19
USE1-208ENST00000600970 PRDM10Q9NQV6 1147 aa22.46■■□□□ 1.19
USE1-208ENST00000600970 HACL1Q9UJ83 578 aa22.46■■□□□ 1.19
USE1-208ENST00000600970 NIP7Q9Y221 180 aaKnown RBP eCLIP22.46■■□□□ 1.19
USE1-208ENST00000600970 NBPF26B4DH59 902 aa22.45■■□□□ 1.18
USE1-208ENST00000600970 NBPF10Q6P3W6 841 aaKnown RBP22.45■■□□□ 1.18
USE1-208ENST00000600970 MCM10Q7L590 875 aa22.45■■□□□ 1.18
USE1-208ENST00000600970 RTKN2Q8IZC4 609 aa22.45■■□□□ 1.18
USE1-208ENST00000600970 NBPF15Q8N660 670 aa22.45■■□□□ 1.18
USE1-208ENST00000600970 FAM177BA6PVY3 158 aa22.44■■□□□ 1.18
USE1-208ENST00000600970 RGL2O15211 777 aa22.44■■□□□ 1.18
USE1-208ENST00000600970 EPHX2P34913 555 aa22.44■■□□□ 1.18
USE1-208ENST00000600970 CLEC11AQ9Y240 323 aa22.44■■□□□ 1.18
USE1-208ENST00000600970 RTF1Q92541 710 aaKnown RBP22.43■■□□□ 1.18
USE1-208ENST00000600970 CFAP53Q96M91 514 aa22.43■■□□□ 1.18
USE1-208ENST00000600970 RNF123Q5XPI4 1314 aa22.42■■□□□ 1.18
USE1-208ENST00000600970 FZD9O00144 591 aa22.42■■□□□ 1.18
USE1-208ENST00000600970 ALDH1B1P30837 517 aa22.42■■□□□ 1.18
USE1-208ENST00000600970 IARSP41252 1262 aaKnown RBP22.42■■□□□ 1.18
USE1-208ENST00000600970 CTCFP49711 727 aaPredicted RBP22.42■■□□□ 1.18
USE1-208ENST00000600970 HLFQ16534 295 aa22.42■■□□□ 1.18
USE1-208ENST00000600970 SYNE4Q8N205 404 aa22.42■■□□□ 1.18
USE1-208ENST00000600970 AIDAQ96BJ3 306 aa22.42■■□□□ 1.18
USE1-208ENST00000600970 LAMB4A4D0S4 1761 aa22.41■■□□□ 1.18
USE1-208ENST00000600970 DCTN1Q14203 1278 aa22.41■■□□□ 1.18
USE1-208ENST00000600970 WBP1LQ9NX94 342 aa22.41■■□□□ 1.18
USE1-208ENST00000600970 NUDCQ9Y266 331 aa22.41■■□□□ 1.18
USE1-208ENST00000600970 SNED1Q8TER0 1413 aa22.4■■□□□ 1.18
USE1-208ENST00000600970 PNMA8AQ86V59 439 aaPredicted RBP22.4■■□□□ 1.18
USE1-208ENST00000600970 U2AF1L5P0DN76 240 aaPredicted RBP22.39■■□□□ 1.17
USE1-208ENST00000600970 U2AF1Q01081 240 aaKnown RBP eCLIP22.39■■□□□ 1.17
USE1-208ENST00000600970 MAP1SQ66K74 1059 aaPredicted RBP22.39■■□□□ 1.17
USE1-208ENST00000600970 CNTROBQ8N137 903 aa22.39■■□□□ 1.17
USE1-208ENST00000600970 RASSF10A6NK89 507 aa22.38■■□□□ 1.17
USE1-208ENST00000600970 GTF2E1P29083 439 aaPredicted RBP22.38■■□□□ 1.17
USE1-208ENST00000600970 DEFB115Q30KQ5 88 aa22.38■■□□□ 1.17
USE1-208ENST00000600970 GPC2Q8N158 579 aa22.38■■□□□ 1.17
USE1-208ENST00000600970 NUP98P52948 1817 aa22.38■■□□□ 1.17
USE1-208ENST00000600970 HTATSF1O43719 755 aaKnown RBP22.37■■□□□ 1.17
USE1-208ENST00000600970 LBX1P52954 281 aa22.37■■□□□ 1.17
USE1-208ENST00000600970 PSMD1Q99460 953 aa22.37■■□□□ 1.17
USE1-208ENST00000600970 ABCC12Q96J65 1359 aa22.37■■□□□ 1.17
USE1-208ENST00000600970 COL4A5P29400 1685 aa22.36■■□□□ 1.17
USE1-208ENST00000600970 CRY2Q49AN0 593 aa22.36■■□□□ 1.17
USE1-208ENST00000600970 LTBP1Q14766 1721 aa22.36■■□□□ 1.17
USE1-208ENST00000600970 TAF7Q15545 349 aaPredicted RBP22.35■■□□□ 1.17
USE1-208ENST00000600970 NUTM1Q86Y26 1132 aa22.35■■□□□ 1.17
USE1-208ENST00000600970 JDP2Q8WYK2 163 aa22.35■■□□□ 1.17
USE1-208ENST00000600970 NYXQ9GZU5 481 aa22.35■■□□□ 1.17
USE1-208ENST00000600970 MIS18AQ9NYP9 233 aa22.34■■□□□ 1.17
USE1-208ENST00000600970 KDM3BQ7LBC6 1761 aa22.34■■□□□ 1.17
USE1-208ENST00000600970 WDR33Q9C0J8 1336 aaKnown RBP22.33■■□□□ 1.17
USE1-208ENST00000600970 HSPA8P11142 646 aaKnown RBP22.33■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms