RNA–Protein interactions for RNA: ENST00000600879.5

HIF3A-219, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 4

Gene HIF3A, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-219ENST00000600879 DICER1Q9UPY3 1922 aaKnown RBP13.53□□□□□ -0.24
HIF3A-219ENST00000600879 A0A087WZG4 1122 aa13.53□□□□□ -0.24
HIF3A-219ENST00000600879 STARD3NLO95772 234 aa13.53□□□□□ -0.24
HIF3A-219ENST00000600879 SRGNP10124 158 aa13.53□□□□□ -0.24
HIF3A-219ENST00000600879 EPHX2P34913 555 aa13.53□□□□□ -0.24
HIF3A-219ENST00000600879 MLLT1Q03111 559 aaPredicted RBP13.53□□□□□ -0.24
HIF3A-219ENST00000600879 PAXIP1Q6ZW49 1069 aaPredicted RBP13.53□□□□□ -0.24
HIF3A-219ENST00000600879 VSIG10Q8N0Z9 540 aa13.53□□□□□ -0.24
HIF3A-219ENST00000600879 CNTROBQ8N137 903 aa13.53□□□□□ -0.24
HIF3A-219ENST00000600879 CNBD1Q8NA66 436 aa13.53□□□□□ -0.24
HIF3A-219ENST00000600879 L3MBTL3Q96JM7 780 aaPredicted RBP13.53□□□□□ -0.24
HIF3A-219ENST00000600879 VIRMAQ69YN4 1812 aaKnown RBP13.53□□□□□ -0.24
HIF3A-219ENST00000600879 RASSF10A6NK89 507 aa13.52□□□□□ -0.25
HIF3A-219ENST00000600879 A1BGP04217 495 aa13.52□□□□□ -0.25
HIF3A-219ENST00000600879 HSPA5P11021 654 aaKnown RBP13.52□□□□□ -0.25
HIF3A-219ENST00000600879 STYK1Q6J9G0 422 aa13.52□□□□□ -0.25
HIF3A-219ENST00000600879 CNKSR1Q969H4 720 aa13.52□□□□□ -0.25
HIF3A-219ENST00000600879 ZNF496Q96IT1 587 aaPredicted RBP13.52□□□□□ -0.25
HIF3A-219ENST00000600879 HACL1Q9UJ83 578 aa13.52□□□□□ -0.25
HIF3A-219ENST00000600879 SCN7AQ01118 1682 aa13.52□□□□□ -0.25
HIF3A-219ENST00000600879 PDZRN3Q9UPQ7 1066 aa13.51□□□□□ -0.25
HIF3A-219ENST00000600879 UBR2Q8IWV8 1755 aa13.5□□□□□ -0.25
HIF3A-219ENST00000600879 FAM177BA6PVY3 158 aa13.5□□□□□ -0.25
HIF3A-219ENST00000600879 CAMTA2O94983 1202 aa13.5□□□□□ -0.25
HIF3A-219ENST00000600879 ST5P78524 1137 aa13.5□□□□□ -0.25
HIF3A-219ENST00000600879 CYP4F22Q6NT55 531 aa13.5□□□□□ -0.25
HIF3A-219ENST00000600879 SLC51AQ86UW1 340 aa13.5□□□□□ -0.25
HIF3A-219ENST00000600879 C7orf43Q8WVR3 580 aa13.5□□□□□ -0.25
HIF3A-219ENST00000600879 MASTLQ96GX5 879 aa13.5□□□□□ -0.25
HIF3A-219ENST00000600879 SETDB2Q96T68 719 aa13.5□□□□□ -0.25
HIF3A-219ENST00000600879 KNSTRNQ9Y448 316 aa13.5□□□□□ -0.25
HIF3A-219ENST00000600879 HEG1Q9ULI3 1381 aa13.49□□□□□ -0.25
HIF3A-219ENST00000600879 CLSPNQ9HAW4 1339 aa13.49□□□□□ -0.25
HIF3A-219ENST00000600879 TRAF5O00463 557 aa13.49□□□□□ -0.25
HIF3A-219ENST00000600879 EIF4G2P78344 907 aaKnown RBP eCLIP13.49□□□□□ -0.25
HIF3A-219ENST00000600879 MAP2K1Q02750 393 aaPredicted RBP13.49□□□□□ -0.25
HIF3A-219ENST00000600879 CCDC93Q567U6 631 aa13.49□□□□□ -0.25
HIF3A-219ENST00000600879 CAPNS2Q96L46 248 aa13.49□□□□□ -0.25
HIF3A-219ENST00000600879 ADAMTSL1Q8N6G6 1762 aa13.48□□□□□ -0.25
HIF3A-219ENST00000600879 KCNQ3O43525 872 aa13.48□□□□□ -0.25
HIF3A-219ENST00000600879 AOC2O75106 756 aa13.48□□□□□ -0.25
HIF3A-219ENST00000600879 FKBP4Q02790 459 aaKnown RBP eCLIP13.48□□□□□ -0.25
HIF3A-219ENST00000600879 TEFQ10587 303 aa13.48□□□□□ -0.25
HIF3A-219ENST00000600879 NPM2Q86SE8 214 aaKnown RBP13.48□□□□□ -0.25
HIF3A-219ENST00000600879 GJA3Q9Y6H8 435 aa13.48□□□□□ -0.25
HIF3A-219ENST00000600879 IL6STP40189 918 aaPredicted RBP13.47□□□□□ -0.25
HIF3A-219ENST00000600879 CNGB1Q14028 1251 aaPredicted RBP13.47□□□□□ -0.25
HIF3A-219ENST00000600879 SOGA3Q5TF21 947 aa13.47□□□□□ -0.25
HIF3A-219ENST00000600879 ZNF790Q6PG37 636 aa13.47□□□□□ -0.25
HIF3A-219ENST00000600879 NBPF5PQ86XG9 351 aaPredicted RBP13.47□□□□□ -0.25
HIF3A-219ENST00000600879 DZIP3Q86Y13 1208 aaKnown RBP13.47□□□□□ -0.25
HIF3A-219ENST00000600879 DDX21Q9NR30 783 aaKnown RBP eCLIP13.47□□□□□ -0.25
HIF3A-219ENST00000600879 SCN4AP35499 1836 aa13.46□□□□□ -0.25
HIF3A-219ENST00000600879 PRAMEF22A3QJZ6 481 aa13.46□□□□□ -0.25
HIF3A-219ENST00000600879 DIAPH1O60610 1272 aaKnown RBP13.46□□□□□ -0.25
HIF3A-219ENST00000600879 SYNE4Q8N205 404 aa13.46□□□□□ -0.25
HIF3A-219ENST00000600879 IL17REQ8NFR9 667 aa13.46□□□□□ -0.25
HIF3A-219ENST00000600879 GPR101Q96P66 508 aaPredicted RBP13.46□□□□□ -0.25
HIF3A-219ENST00000600879 COL4A5P29400 1685 aa13.46□□□□□ -0.26
HIF3A-219ENST00000600879 IARSP41252 1262 aaKnown RBP13.45□□□□□ -0.26
HIF3A-219ENST00000600879 AMER1Q5JTC6 1135 aaPredicted RBP13.45□□□□□ -0.26
HIF3A-219ENST00000600879 PNMA8AQ86V59 439 aaPredicted RBP13.45□□□□□ -0.26
HIF3A-219ENST00000600879 FMNL2Q96PY5 1086 aa13.45□□□□□ -0.26
HIF3A-219ENST00000600879 TEX13AQ9BXU3 409 aaPredicted RBP13.45□□□□□ -0.26
HIF3A-219ENST00000600879 GNAT3A8MTJ3 354 aa13.44□□□□□ -0.26
HIF3A-219ENST00000600879 FZD9O00144 591 aa13.44□□□□□ -0.26
HIF3A-219ENST00000600879 U2SURPO15042 1029 aaKnown RBP13.44□□□□□ -0.26
HIF3A-219ENST00000600879 NPR1P16066 1061 aa13.44□□□□□ -0.26
HIF3A-219ENST00000600879 EPS15P42566 896 aa13.44□□□□□ -0.26
HIF3A-219ENST00000600879 RGS19P49795 217 aa13.44□□□□□ -0.26
HIF3A-219ENST00000600879 CST9Q5W186 159 aa13.44□□□□□ -0.26
HIF3A-219ENST00000600879 BEGAINQ9BUH8 593 aa13.44□□□□□ -0.26
HIF3A-219ENST00000600879 MCOLN1Q9GZU1 580 aa13.44□□□□□ -0.26
HIF3A-219ENST00000600879 ARFGEF2Q9Y6D5 1785 aa13.44□□□□□ -0.26
HIF3A-219ENST00000600879 LTBP1Q14766 1721 aa13.44□□□□□ -0.26
HIF3A-219ENST00000600879 CC2D1BQ5T0F9 858 aaKnown RBP13.43□□□□□ -0.26
HIF3A-219ENST00000600879 TIMELESSQ9UNS1 1208 aa13.43□□□□□ -0.26
HIF3A-219ENST00000600879 USP16Q9Y5T5 823 aa13.43□□□□□ -0.26
HIF3A-219ENST00000600879 BCORQ6W2J9 1755 aa13.43□□□□□ -0.26
HIF3A-219ENST00000600879 TCERG1O14776 1098 aaKnown RBP13.42□□□□□ -0.26
HIF3A-219ENST00000600879 GPC2Q8N158 579 aa13.42□□□□□ -0.26
HIF3A-219ENST00000600879 BTBD11A6QL63 1104 aa13.41□□□□□ -0.26
HIF3A-219ENST00000600879 SCNN1DP51172 638 aa13.41□□□□□ -0.26
HIF3A-219ENST00000600879 RTKN2Q8IZC4 609 aa13.41□□□□□ -0.26
HIF3A-219ENST00000600879 NIP7Q9Y221 180 aaKnown RBP eCLIP13.41□□□□□ -0.26
HIF3A-219ENST00000600879 THSD7BQ9C0I4 1608 aa13.4□□□□□ -0.26
HIF3A-219ENST00000600879 LMOD1P29536 600 aaPredicted RBP13.4□□□□□ -0.26
HIF3A-219ENST00000600879 ECE1P42892 770 aa13.4□□□□□ -0.26
HIF3A-219ENST00000600879 DGKZQ13574 1117 aa13.4□□□□□ -0.26
HIF3A-219ENST00000600879 GAS2L2Q8NHY3 880 aa13.4□□□□□ -0.26
HIF3A-219ENST00000600879 PCDH10Q9P2E7 1040 aa13.4□□□□□ -0.26
HIF3A-219ENST00000600879 SIPA1L3O60292 1781 aaPredicted RBP13.4□□□□□ -0.26
HIF3A-219ENST00000600879 EIF6P56537 245 aaKnown RBP13.39□□□□□ -0.27
HIF3A-219ENST00000600879 HLFQ16534 295 aa13.39□□□□□ -0.27
HIF3A-219ENST00000600879 NUTM1Q86Y26 1132 aa13.39□□□□□ -0.27
HIF3A-219ENST00000600879 JDP2Q8WYK2 163 aa13.39□□□□□ -0.27
HIF3A-219ENST00000600879 ZIC5Q96T25 663 aa13.39□□□□□ -0.27
HIF3A-219ENST00000600879 ZNF408Q9H9D4 720 aa13.39□□□□□ -0.27
HIF3A-219ENST00000600879 ZNF652Q9Y2D9 606 aa13.39□□□□□ -0.27
HIF3A-219ENST00000600879 TLL2Q9Y6L7 1015 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms