RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 PDZRN3Q9UPQ7 1066 aa23.29■■□□□ 1.32
SHKBP1-223ENST00000600552 NIP7Q9Y221 180 aaKnown RBP eCLIP23.28■■□□□ 1.32
SHKBP1-223ENST00000600552 CNKSR1Q969H4 720 aa23.27■■□□□ 1.32
SHKBP1-223ENST00000600552 MAPK8IP3Q9UPT6 1336 aa23.27■■□□□ 1.32
SHKBP1-223ENST00000600552 CACNA1SQ13698 1873 aa23.26■■□□□ 1.31
SHKBP1-223ENST00000600552 COL11A2P13942 1736 aaPredicted RBP23.26■■□□□ 1.31
SHKBP1-223ENST00000600552 GLTPD2A6NH11 291 aa23.26■■□□□ 1.31
SHKBP1-223ENST00000600552 RRP7AQ9Y3A4 280 aaKnown RBP23.26■■□□□ 1.31
SHKBP1-223ENST00000600552 DLG5Q8TDM6 1919 aa23.25■■□□□ 1.31
SHKBP1-223ENST00000600552 BCORQ6W2J9 1755 aa23.25■■□□□ 1.31
SHKBP1-223ENST00000600552 NFE2L2Q16236 605 aa23.25■■□□□ 1.31
SHKBP1-223ENST00000600552 CLEC4GQ6UXB4 293 aa23.25■■□□□ 1.31
SHKBP1-223ENST00000600552 MASTLQ96GX5 879 aa23.25■■□□□ 1.31
SHKBP1-223ENST00000600552 SRGNP10124 158 aa23.24■■□□□ 1.31
SHKBP1-223ENST00000600552 GTF2E1P29083 439 aaPredicted RBP23.24■■□□□ 1.31
SHKBP1-223ENST00000600552 HLFQ16534 295 aa23.24■■□□□ 1.31
SHKBP1-223ENST00000600552 ERFEQ4G0M1 354 aa23.24■■□□□ 1.31
SHKBP1-223ENST00000600552 STYK1Q6J9G0 422 aa23.24■■□□□ 1.31
SHKBP1-223ENST00000600552 PRPF40BQ6NWY9 871 aaKnown RBP23.24■■□□□ 1.31
SHKBP1-223ENST00000600552 MYL6BP14649 208 aa23.23■■□□□ 1.31
SHKBP1-223ENST00000600552 VEGFAP15692 232 aaPredicted RBP23.23■■□□□ 1.31
SHKBP1-223ENST00000600552 FSTL1Q12841 308 aa23.23■■□□□ 1.31
SHKBP1-223ENST00000600552 TPTE2Q6XPS3 522 aa23.23■■□□□ 1.31
SHKBP1-223ENST00000600552 PNISRQ8TF01 805 aaKnown RBP23.23■■□□□ 1.31
SHKBP1-223ENST00000600552 PLEKHF1Q96S99 279 aa23.23■■□□□ 1.31
SHKBP1-223ENST00000600552 SLX4Q8IY92 1834 aa23.23■■□□□ 1.31
SHKBP1-223ENST00000600552 TNRC6CQ9HCJ0 1690 aaKnown RBP23.22■■□□□ 1.31
SHKBP1-223ENST00000600552 DPY19L2Q6NUT2 758 aa23.22■■□□□ 1.31
SHKBP1-223ENST00000600552 TAOK3Q9H2K8 898 aa23.22■■□□□ 1.31
SHKBP1-223ENST00000600552 PNNQ9H307 717 aaKnown RBP23.22■■□□□ 1.31
SHKBP1-223ENST00000600552 ZC3H4Q9UPT8 1303 aaKnown RBP23.22■■□□□ 1.31
SHKBP1-223ENST00000600552 TIAM2Q8IVF5 1701 aa23.22■■□□□ 1.31
SHKBP1-223ENST00000600552 SMC1BQ8NDV3 1235 aa23.21■■□□□ 1.31
SHKBP1-223ENST00000600552 DNAJC5GQ8N7S2 189 aa23.2■■□□□ 1.3
SHKBP1-223ENST00000600552 EIF4A1P60842 406 aaKnown RBP23.19■■□□□ 1.3
SHKBP1-223ENST00000600552 NPR1P16066 1061 aa23.18■■□□□ 1.3
SHKBP1-223ENST00000600552 DDX10Q13206 875 aaKnown RBP23.18■■□□□ 1.3
SHKBP1-223ENST00000600552 KIF6Q6ZMV9 814 aa23.18■■□□□ 1.3
SHKBP1-223ENST00000600552 TTLL7Q6ZT98 887 aa23.18■■□□□ 1.3
SHKBP1-223ENST00000600552 FER1L6Q2WGJ9 1857 aa23.17■■□□□ 1.3
SHKBP1-223ENST00000600552 WDR90Q96KV7 1748 aa23.17■■□□□ 1.3
SHKBP1-223ENST00000600552 GPTP24298 496 aa23.17■■□□□ 1.3
SHKBP1-223ENST00000600552 RIPK4P57078 832 aa23.17■■□□□ 1.3
SHKBP1-223ENST00000600552 SOGA3Q5TF21 947 aa23.17■■□□□ 1.3
SHKBP1-223ENST00000600552 OLFM4Q6UX06 510 aa23.17■■□□□ 1.3
SHKBP1-223ENST00000600552 ZBTB3Q9H5J0 574 aa23.17■■□□□ 1.3
SHKBP1-223ENST00000600552 NUTM1Q86Y26 1132 aa23.16■■□□□ 1.3
SHKBP1-223ENST00000600552 TSPYL4Q9UJ04 414 aa23.16■■□□□ 1.3
SHKBP1-223ENST00000600552 DDNO94850 711 aaPredicted RBP23.15■■□□□ 1.3
SHKBP1-223ENST00000600552 EIF2S2P20042 333 aaKnown RBP23.15■■□□□ 1.3
SHKBP1-223ENST00000600552 CCDC93Q567U6 631 aa23.15■■□□□ 1.3
SHKBP1-223ENST00000600552 LAMB4A4D0S4 1761 aa23.14■■□□□ 1.3
SHKBP1-223ENST00000600552 KDM3BQ7LBC6 1761 aa23.14■■□□□ 1.3
SHKBP1-223ENST00000600552 POTECB2RU33 542 aa23.14■■□□□ 1.29
SHKBP1-223ENST00000600552 RALBP1Q15311 655 aa23.14■■□□□ 1.29
SHKBP1-223ENST00000600552 NEUROD2Q15784 382 aa23.14■■□□□ 1.29
SHKBP1-223ENST00000600552 DICER1Q9UPY3 1922 aaKnown RBP23.14■■□□□ 1.29
SHKBP1-223ENST00000600552 MAP3K15Q6ZN16 1313 aa23.13■■□□□ 1.29
SHKBP1-223ENST00000600552 IFFO2Q5TF58 517 aa23.13■■□□□ 1.29
SHKBP1-223ENST00000600552 CCDC146Q8IYE0 955 aa23.13■■□□□ 1.29
SHKBP1-223ENST00000600552 ZNF277Q9NRM2 450 aaPredicted RBP23.13■■□□□ 1.29
SHKBP1-223ENST00000600552 LTBP3Q9NS15 1303 aa23.12■■□□□ 1.29
SHKBP1-223ENST00000600552 NECTIN2Q92692 538 aa23.12■■□□□ 1.29
SHKBP1-223ENST00000600552 KLRG1Q96E93 195 aa23.12■■□□□ 1.29
SHKBP1-223ENST00000600552 NYXQ9GZU5 481 aa23.12■■□□□ 1.29
SHKBP1-223ENST00000600552 NUP98P52948 1817 aa23.11■■□□□ 1.29
SHKBP1-223ENST00000600552 ERVV-1B6SEH8 477 aa23.11■■□□□ 1.29
SHKBP1-223ENST00000600552 C7orf43Q8WVR3 580 aa23.11■■□□□ 1.29
SHKBP1-223ENST00000600552 TCERG1O14776 1098 aaKnown RBP23.1■■□□□ 1.29
SHKBP1-223ENST00000600552 ANXA1P04083 346 aa23.1■■□□□ 1.29
SHKBP1-223ENST00000600552 ALDH1B1P30837 517 aa23.1■■□□□ 1.29
SHKBP1-223ENST00000600552 LAS1LQ9Y4W2 734 aaKnown RBP23.1■■□□□ 1.29
SHKBP1-223ENST00000600552 ARFGEF2Q9Y6D5 1785 aa23.09■■□□□ 1.29
SHKBP1-223ENST00000600552 KLRG2A4D1S0 409 aaPredicted RBP23.09■■□□□ 1.29
SHKBP1-223ENST00000600552 RGL2O15211 777 aa23.09■■□□□ 1.29
SHKBP1-223ENST00000600552 TMPOP42166 694 aaKnown RBP23.09■■□□□ 1.29
SHKBP1-223ENST00000600552 FKBP4Q02790 459 aaKnown RBP eCLIP23.09■■□□□ 1.29
SHKBP1-223ENST00000600552 RPGRQ92834 1020 aaKnown RBP23.09■■□□□ 1.29
SHKBP1-223ENST00000600552 ABCC12Q96J65 1359 aa23.09■■□□□ 1.29
SHKBP1-223ENST00000600552 SUSD4Q5VX71 490 aa23.08■■□□□ 1.29
SHKBP1-223ENST00000600552 RTKN2Q8IZC4 609 aa23.07■■□□□ 1.28
SHKBP1-223ENST00000600552 SYNE4Q8N205 404 aa23.07■■□□□ 1.28
SHKBP1-223ENST00000600552 POTEIP0CG38 1075 aa23.06■■□□□ 1.28
SHKBP1-223ENST00000600552 POTEJP0CG39 1038 aa23.06■■□□□ 1.28
SHKBP1-223ENST00000600552 LMOD3Q0VAK6 560 aa23.06■■□□□ 1.28
SHKBP1-223ENST00000600552 UBN2Q6ZU65 1347 aa23.06■■□□□ 1.28
SHKBP1-223ENST00000600552 AIMP1Q12904 312 aaKnown RBP23.05■■□□□ 1.28
SHKBP1-223ENST00000600552 WDR43Q15061 677 aaKnown RBP eCLIP23.05■■□□□ 1.28
SHKBP1-223ENST00000600552 PROSER3Q2NL68 480 aa23.05■■□□□ 1.28
SHKBP1-223ENST00000600552 MYBBP1AQ9BQG0 1328 aaKnown RBP23.05■■□□□ 1.28
SHKBP1-223ENST00000600552 CHADLQ6NUI6 762 aa23.04■■□□□ 1.28
SHKBP1-223ENST00000600552 ZNF34Q8IZ26 560 aa23.04■■□□□ 1.28
SHKBP1-223ENST00000600552 ZNF541Q9H0D2 1346 aa23.04■■□□□ 1.28
SHKBP1-223ENST00000600552 IARSP41252 1262 aaKnown RBP23.03■■□□□ 1.28
SHKBP1-223ENST00000600552 EAPPQ56P03 285 aaPredicted RBP23.03■■□□□ 1.28
SHKBP1-223ENST00000600552 GIGYF2Q6Y7W6 1299 aaKnown RBP23.03■■□□□ 1.28
SHKBP1-223ENST00000600552 PPP1R42Q7Z4L9 355 aa23.03■■□□□ 1.28
SHKBP1-223ENST00000600552 ZNF428Q96B54 188 aa23.03■■□□□ 1.28
SHKBP1-223ENST00000600552 RBM17Q96I25 401 aaKnown RBP23.02■■□□□ 1.28
SHKBP1-223ENST00000600552 CLEC11AQ9Y240 323 aa23.02■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms