RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 ZBED9Q6R2W3 1325 aa23.5■■□□□ 1.35
LIG1-216ENST00000598938 ELL2O00472 640 aaPredicted RBP23.49■■□□□ 1.35
LIG1-216ENST00000598938 EXOSC9Q06265 439 aaKnown RBP23.49■■□□□ 1.35
LIG1-216ENST00000598938 HDGFL1Q5TGJ6 251 aa23.49■■□□□ 1.35
LIG1-216ENST00000598938 PDIA6Q15084 440 aa23.48■■□□□ 1.35
LIG1-216ENST00000598938 TWISTNBQ3B726 338 aaPredicted RBP23.48■■□□□ 1.35
LIG1-216ENST00000598938 NECTIN2Q92692 538 aa23.47■■□□□ 1.35
LIG1-216ENST00000598938 A0A087WZG4 1122 aa23.46■■□□□ 1.35
LIG1-216ENST00000598938 RFC4P35249 363 aa23.46■■□□□ 1.35
LIG1-216ENST00000598938 LRP10Q7Z4F1 713 aa23.46■■□□□ 1.35
LIG1-216ENST00000598938 WDR90Q96KV7 1748 aa23.46■■□□□ 1.35
LIG1-216ENST00000598938 USP42Q9H9J4 1324 aaKnown RBP23.46■■□□□ 1.35
LIG1-216ENST00000598938 BCS1LQ9Y276 419 aa23.46■■□□□ 1.35
LIG1-216ENST00000598938 MYL6BP14649 208 aa23.44■■□□□ 1.34
LIG1-216ENST00000598938 PROSER3Q2NL68 480 aa23.44■■□□□ 1.34
LIG1-216ENST00000598938 CHMP4AQ9BY43 222 aa23.44■■□□□ 1.34
LIG1-216ENST00000598938 DDX21Q9NR30 783 aaKnown RBP eCLIP23.44■■□□□ 1.34
LIG1-216ENST00000598938 NARFQ9UHQ1 456 aa23.44■■□□□ 1.34
LIG1-216ENST00000598938 ZNF330Q9Y3S2 320 aaPredicted RBP23.44■■□□□ 1.34
LIG1-216ENST00000598938 VAMP4O75379 141 aa23.43■■□□□ 1.34
LIG1-216ENST00000598938 GYS1P13807 737 aa23.43■■□□□ 1.34
LIG1-216ENST00000598938 CHPF2Q9P2E5 772 aa23.43■■□□□ 1.34
LIG1-216ENST00000598938 DBF4Q9UBU7 674 aaPredicted RBP23.43■■□□□ 1.34
LIG1-216ENST00000598938 SRP68Q9UHB9 627 aaKnown RBP23.43■■□□□ 1.34
LIG1-216ENST00000598938 SCN7AQ01118 1682 aa23.43■■□□□ 1.34
LIG1-216ENST00000598938 A0A0G2JLW4 131 aa23.42■■□□□ 1.34
LIG1-216ENST00000598938 CCDC30Q5VVM6 783 aa23.42■■□□□ 1.34
LIG1-216ENST00000598938 NPM2Q86SE8 214 aaKnown RBP23.42■■□□□ 1.34
LIG1-216ENST00000598938 PARP3Q9Y6F1 533 aa23.42■■□□□ 1.34
LIG1-216ENST00000598938 ZPR1O75312 459 aa23.41■■□□□ 1.34
LIG1-216ENST00000598938 ANXA1P04083 346 aa23.41■■□□□ 1.34
LIG1-216ENST00000598938 DZIP3Q86Y13 1208 aaKnown RBP23.41■■□□□ 1.34
LIG1-216ENST00000598938 TBC1D2BQ9UPU7 963 aa23.41■■□□□ 1.34
LIG1-216ENST00000598938 BCORQ6W2J9 1755 aa23.4■■□□□ 1.34
LIG1-216ENST00000598938 DPEP1P16444 411 aa23.4■■□□□ 1.34
LIG1-216ENST00000598938 USPL1Q5W0Q7 1092 aa23.4■■□□□ 1.34
LIG1-216ENST00000598938 ARHGAP27Q6ZUM4 889 aa23.4■■□□□ 1.34
LIG1-216ENST00000598938 DNAJC5GQ8N7S2 189 aa23.4■■□□□ 1.34
LIG1-216ENST00000598938 RBM46Q8TBY0 533 aaKnown RBP23.4■■□□□ 1.34
LIG1-216ENST00000598938 TNRC6CQ9HCJ0 1690 aaKnown RBP23.4■■□□□ 1.34
LIG1-216ENST00000598938 CAMTA2O94983 1202 aa23.39■■□□□ 1.33
LIG1-216ENST00000598938 BCL2L12Q9HB09 334 aa23.39■■□□□ 1.33
LIG1-216ENST00000598938 TTLL7Q6ZT98 887 aa23.38■■□□□ 1.33
LIG1-216ENST00000598938 HYPKQ9NX55 129 aa23.38■■□□□ 1.33
LIG1-216ENST00000598938 RGL2O15211 777 aa23.37■■□□□ 1.33
LIG1-216ENST00000598938 FKBP8Q14318 412 aa23.37■■□□□ 1.33
LIG1-216ENST00000598938 NMRK2Q9NPI5 230 aa23.37■■□□□ 1.33
LIG1-216ENST00000598938 SBF1O95248 1867 aa23.36■■□□□ 1.33
LIG1-216ENST00000598938 KCNA3P22001 575 aa23.36■■□□□ 1.33
LIG1-216ENST00000598938 XAGE3Q8WTP9 111 aa23.36■■□□□ 1.33
LIG1-216ENST00000598938 STK31Q9BXU1 1019 aa23.36■■□□□ 1.33
LIG1-216ENST00000598938 PIM2Q9P1W9 311 aa23.36■■□□□ 1.33
LIG1-216ENST00000598938 MAP3K15Q6ZN16 1313 aa23.35■■□□□ 1.33
LIG1-216ENST00000598938 KIF6Q6ZMV9 814 aa23.35■■□□□ 1.33
LIG1-216ENST00000598938 COPS6Q7L5N1 327 aa23.35■■□□□ 1.33
LIG1-216ENST00000598938 KDM2BQ8NHM5 1336 aa23.34■■□□□ 1.33
LIG1-216ENST00000598938 ERVV-1B6SEH8 477 aa23.34■■□□□ 1.33
LIG1-216ENST00000598938 TCERG1O14776 1098 aaKnown RBP23.34■■□□□ 1.33
LIG1-216ENST00000598938 CT47B1P0C2W7 299 aaPredicted RBP23.34■■□□□ 1.33
LIG1-216ENST00000598938 FSTL1Q12841 308 aa23.34■■□□□ 1.33
LIG1-216ENST00000598938 C16orf71Q8IYS4 520 aaPredicted RBP23.34■■□□□ 1.33
LIG1-216ENST00000598938 C9orf131Q5VYM1 1079 aa23.33■■□□□ 1.33
LIG1-216ENST00000598938 CLEC4GQ6UXB4 293 aa23.33■■□□□ 1.33
LIG1-216ENST00000598938 PHAXQ9H814 394 aaKnown RBP23.33■■□□□ 1.33
LIG1-216ENST00000598938 SLC4A2P04920 1241 aa23.32■■□□□ 1.32
LIG1-216ENST00000598938 TM4SF1P30408 202 aa23.32■■□□□ 1.32
LIG1-216ENST00000598938 AIMP1Q12904 312 aaKnown RBP23.32■■□□□ 1.32
LIG1-216ENST00000598938 HLFQ16534 295 aa23.32■■□□□ 1.32
LIG1-216ENST00000598938 ZNF428Q96B54 188 aa23.32■■□□□ 1.32
LIG1-216ENST00000598938 DALRD3Q5D0E6 543 aaKnown RBP23.31■■□□□ 1.32
LIG1-216ENST00000598938 ZBTB3Q9H5J0 574 aa23.31■■□□□ 1.32
LIG1-216ENST00000598938 ZNF652Q9Y2D9 606 aa23.31■■□□□ 1.32
LIG1-216ENST00000598938 DLEC1Q9Y238 1755 aa23.3■■□□□ 1.32
LIG1-216ENST00000598938 TBC1D9BQ66K14 1250 aa23.3■■□□□ 1.32
LIG1-216ENST00000598938 ZC3H4Q9UPT8 1303 aaKnown RBP23.3■■□□□ 1.32
LIG1-216ENST00000598938 DDR1Q08345 913 aa23.29■■□□□ 1.32
LIG1-216ENST00000598938 NFIXQ14938 502 aa23.29■■□□□ 1.32
LIG1-216ENST00000598938 GIGYF2Q6Y7W6 1299 aaKnown RBP23.29■■□□□ 1.32
LIG1-216ENST00000598938 JMYQ8N9B5 988 aa23.29■■□□□ 1.32
LIG1-216ENST00000598938 PLBD2Q8NHP8 589 aa23.29■■□□□ 1.32
LIG1-216ENST00000598938 NRXN2Q9P2S2 1712 aa23.28■■□□□ 1.32
LIG1-216ENST00000598938 ALDH1L2Q3SY69 923 aa23.28■■□□□ 1.32
LIG1-216ENST00000598938 ANKRD13DQ6ZTN6 518 aa23.28■■□□□ 1.32
LIG1-216ENST00000598938 G2E3Q7L622 706 aa23.28■■□□□ 1.32
LIG1-216ENST00000598938 KLRG1Q96E93 195 aa23.28■■□□□ 1.32
LIG1-216ENST00000598938 YTHDC1Q96MU7 727 aaKnown RBP23.28■■□□□ 1.32
LIG1-216ENST00000598938 CACNA1FO60840 1977 aa23.28■■□□□ 1.32
LIG1-216ENST00000598938 NUP98P52948 1817 aa23.28■■□□□ 1.32
LIG1-216ENST00000598938 POLRMTO00411 1230 aaKnown RBP23.27■■□□□ 1.32
LIG1-216ENST00000598938 RNF181Q9P0P0 153 aa23.27■■□□□ 1.32
LIG1-216ENST00000598938 AFDNP55196 1824 aaKnown RBP23.26■■□□□ 1.31
LIG1-216ENST00000598938 FLIIQ13045 1269 aa23.26■■□□□ 1.31
LIG1-216ENST00000598938 SSH1Q8WYL5 1049 aa23.26■■□□□ 1.31
LIG1-216ENST00000598938 ARFGEF2Q9Y6D5 1785 aa23.25■■□□□ 1.31
LIG1-216ENST00000598938 DDX58O95786 925 aaKnown RBP23.25■■□□□ 1.31
LIG1-216ENST00000598938 BICDL1Q6ZP65 573 aa23.25■■□□□ 1.31
LIG1-216ENST00000598938 MRPL50Q8N5N7 158 aaKnown RBP23.25■■□□□ 1.31
LIG1-216ENST00000598938 CARMIL3Q8ND23 1372 aa23.25■■□□□ 1.31
LIG1-216ENST00000598938 ZNF34Q8IZ26 560 aa23.24■■□□□ 1.31
LIG1-216ENST00000598938 SETDB2Q96T68 719 aa23.24■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms