RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 SCN7AQ01118 1682 aa18.93■□□□□ 0.62
SHKBP1-218ENST00000598907 TBC1D9BQ66K14 1250 aa18.93■□□□□ 0.62
SHKBP1-218ENST00000598907 ARFGEF2Q9Y6D5 1785 aa18.93■□□□□ 0.62
SHKBP1-218ENST00000598907 NPHP1O15259 732 aa18.92■□□□□ 0.62
SHKBP1-218ENST00000598907 PRR5LQ6MZQ0 368 aa18.92■□□□□ 0.62
SHKBP1-218ENST00000598907 CYP4F22Q6NT55 531 aa18.92■□□□□ 0.62
SHKBP1-218ENST00000598907 BRIP1Q9BX63 1249 aa18.92■□□□□ 0.62
SHKBP1-218ENST00000598907 FMR1Q06787 632 aaKnown RBP eCLIP18.91■□□□□ 0.62
SHKBP1-218ENST00000598907 SLC39A6Q13433 755 aa18.91■□□□□ 0.62
SHKBP1-218ENST00000598907 CNKSR1Q969H4 720 aa18.9■□□□□ 0.62
SHKBP1-218ENST00000598907 GPR101Q96P66 508 aaPredicted RBP18.9■□□□□ 0.62
SHKBP1-218ENST00000598907 PDZRN3Q9UPQ7 1066 aa18.9■□□□□ 0.62
SHKBP1-218ENST00000598907 ZNF330Q9Y3S2 320 aaPredicted RBP18.9■□□□□ 0.62
SHKBP1-218ENST00000598907 PDE4DIPQ5VU43 2346 aa18.9■□□□□ 0.62
SHKBP1-218ENST00000598907 ECE1P42892 770 aa18.89■□□□□ 0.61
SHKBP1-218ENST00000598907 SOGA3Q5TF21 947 aa18.89■□□□□ 0.61
SHKBP1-218ENST00000598907 PNMA8AQ86V59 439 aaPredicted RBP18.89■□□□□ 0.61
SHKBP1-218ENST00000598907 DDX21Q9NR30 783 aaKnown RBP eCLIP18.89■□□□□ 0.61
SHKBP1-218ENST00000598907 ZNF277Q9NRM2 450 aaPredicted RBP18.89■□□□□ 0.61
SHKBP1-218ENST00000598907 AOC2O75106 756 aa18.87■□□□□ 0.61
SHKBP1-218ENST00000598907 DGKZQ13574 1117 aa18.87■□□□□ 0.61
SHKBP1-218ENST00000598907 KIF7Q2M1P5 1343 aa18.87■□□□□ 0.61
SHKBP1-218ENST00000598907 CDCA8Q53HL2 280 aa18.87■□□□□ 0.61
SHKBP1-218ENST00000598907 CCDC93Q567U6 631 aa18.87■□□□□ 0.61
SHKBP1-218ENST00000598907 STYK1Q6J9G0 422 aa18.87■□□□□ 0.61
SHKBP1-218ENST00000598907 CNBD1Q8NA66 436 aa18.87■□□□□ 0.61
SHKBP1-218ENST00000598907 SLC52A2Q9HAB3 445 aa18.87■□□□□ 0.61
SHKBP1-218ENST00000598907 MRC1P22897 1456 aa18.85■□□□□ 0.61
SHKBP1-218ENST00000598907 CASP8AP2Q9UKL3 1982 aa18.85■□□□□ 0.61
SHKBP1-218ENST00000598907 SRGNP10124 158 aa18.85■□□□□ 0.61
SHKBP1-218ENST00000598907 SOX10P56693 466 aa18.84■□□□□ 0.61
SHKBP1-218ENST00000598907 ST5P78524 1137 aa18.84■□□□□ 0.61
SHKBP1-218ENST00000598907 SULT6B1Q6IMI4 303 aa18.84■□□□□ 0.61
SHKBP1-218ENST00000598907 OLFM4Q6UX06 510 aa18.84■□□□□ 0.61
SHKBP1-218ENST00000598907 MASTLQ96GX5 879 aa18.84■□□□□ 0.61
SHKBP1-218ENST00000598907 LGR6Q9HBX8 967 aa18.84■□□□□ 0.61
SHKBP1-218ENST00000598907 TBC1D2BQ9UPU7 963 aa18.84■□□□□ 0.61
SHKBP1-218ENST00000598907 A0A087WZG4 1122 aa18.83■□□□□ 0.6
SHKBP1-218ENST00000598907 TRAF5O00463 557 aa18.83■□□□□ 0.6
SHKBP1-218ENST00000598907 FKBP4Q02790 459 aaKnown RBP eCLIP18.83■□□□□ 0.6
SHKBP1-218ENST00000598907 EIF5P55010 431 aaKnown RBP18.82■□□□□ 0.6
SHKBP1-218ENST00000598907 GJA3Q9Y6H8 435 aa18.82■□□□□ 0.6
SHKBP1-218ENST00000598907 UBR2Q8IWV8 1755 aa18.82■□□□□ 0.6
SHKBP1-218ENST00000598907 TRPM7Q96QT4 1865 aa18.82■□□□□ 0.6
SHKBP1-218ENST00000598907 AKAP4Q5JQC9 854 aa18.8■□□□□ 0.6
SHKBP1-218ENST00000598907 GPC2Q8N158 579 aa18.8■□□□□ 0.6
SHKBP1-218ENST00000598907 SETDB2Q96T68 719 aa18.8■□□□□ 0.6
SHKBP1-218ENST00000598907 LMOD1P29536 600 aaPredicted RBP18.79■□□□□ 0.6
SHKBP1-218ENST00000598907 IARSP41252 1262 aaKnown RBP18.79■□□□□ 0.6
SHKBP1-218ENST00000598907 C7orf43Q8WVR3 580 aa18.79■□□□□ 0.6
SHKBP1-218ENST00000598907 POLR3GLQ9BT43 218 aa18.79■□□□□ 0.6
SHKBP1-218ENST00000598907 TLL2Q9Y6L7 1015 aa18.79■□□□□ 0.6
SHKBP1-218ENST00000598907 BCORQ6W2J9 1755 aa18.78■□□□□ 0.6
SHKBP1-218ENST00000598907 RNMTO43148 476 aaKnown RBP18.78■□□□□ 0.6
SHKBP1-218ENST00000598907 CA12O43570 354 aa18.78■□□□□ 0.6
SHKBP1-218ENST00000598907 STARD3NLO95772 234 aa18.78■□□□□ 0.6
SHKBP1-218ENST00000598907 MAP2K2P36507 400 aa18.78■□□□□ 0.6
SHKBP1-218ENST00000598907 CST9Q5W186 159 aa18.78■□□□□ 0.6
SHKBP1-218ENST00000598907 VSIG10Q8N0Z9 540 aa18.78■□□□□ 0.6
SHKBP1-218ENST00000598907 FZD9O00144 591 aa18.77■□□□□ 0.6
SHKBP1-218ENST00000598907 PRPF38BQ5VTL8 546 aaKnown RBP18.77■□□□□ 0.6
SHKBP1-218ENST00000598907 COL4A5P29400 1685 aa18.76■□□□□ 0.59
SHKBP1-218ENST00000598907 TTC5Q8N0Z6 440 aa18.76■□□□□ 0.59
SHKBP1-218ENST00000598907 NPR1P16066 1061 aa18.75■□□□□ 0.59
SHKBP1-218ENST00000598907 CIAPIN1Q6FI81 312 aa18.75■□□□□ 0.59
SHKBP1-218ENST00000598907 SYNE4Q8N205 404 aa18.75■□□□□ 0.59
SHKBP1-218ENST00000598907 JDP2Q8WYK2 163 aa18.75■□□□□ 0.59
SHKBP1-218ENST00000598907 EPS15P42566 896 aa18.74■□□□□ 0.59
SHKBP1-218ENST00000598907 BRPF1P55201 1214 aaPredicted RBP18.74■□□□□ 0.59
SHKBP1-218ENST00000598907 EIF6P56537 245 aaKnown RBP18.74■□□□□ 0.59
SHKBP1-218ENST00000598907 NPM2Q86SE8 214 aaKnown RBP18.74■□□□□ 0.59
SHKBP1-218ENST00000598907 NBPF5PQ86XG9 351 aaPredicted RBP18.74■□□□□ 0.59
SHKBP1-218ENST00000598907 RTKN2Q8IZC4 609 aa18.74■□□□□ 0.59
SHKBP1-218ENST00000598907 CAMTA2O94983 1202 aa18.73■□□□□ 0.59
SHKBP1-218ENST00000598907 CELF2O95319 508 aaKnown RBP18.73■□□□□ 0.59
SHKBP1-218ENST00000598907 SCNN1DP51172 638 aa18.73■□□□□ 0.59
SHKBP1-218ENST00000598907 SAPCD2Q86UD0 394 aa18.72■□□□□ 0.59
SHKBP1-218ENST00000598907 ZNF408Q9H9D4 720 aa18.72■□□□□ 0.59
SHKBP1-218ENST00000598907 IL6STP40189 918 aaPredicted RBP18.71■□□□□ 0.59
SHKBP1-218ENST00000598907 HEG1Q9ULI3 1381 aa18.7■□□□□ 0.58
SHKBP1-218ENST00000598907 FAM177BA6PVY3 158 aa18.7■□□□□ 0.58
SHKBP1-218ENST00000598907 DDX10Q13206 875 aaKnown RBP18.7■□□□□ 0.58
SHKBP1-218ENST00000598907 DZIP3Q86Y13 1208 aaKnown RBP18.7■□□□□ 0.58
SHKBP1-218ENST00000598907 ZNF496Q96IT1 587 aaPredicted RBP18.7■□□□□ 0.58
SHKBP1-218ENST00000598907 A1BGP04217 495 aa18.69■□□□□ 0.58
SHKBP1-218ENST00000598907 HMOX1P09601 288 aa18.69■□□□□ 0.58
SHKBP1-218ENST00000598907 PIP4K2AP48426 406 aaPredicted RBP18.69■□□□□ 0.58
SHKBP1-218ENST00000598907 USP50Q70EL3 339 aaPredicted RBP18.69■□□□□ 0.58
SHKBP1-218ENST00000598907 IL13P35225 146 aa18.68■□□□□ 0.58
SHKBP1-218ENST00000598907 ZIC5Q96T25 663 aa18.68■□□□□ 0.58
SHKBP1-218ENST00000598907 GLIS2Q9BZE0 524 aaPredicted RBP18.68■□□□□ 0.58
SHKBP1-218ENST00000598907 MTHFSDQ2M296 383 aaKnown RBP18.67■□□□□ 0.58
SHKBP1-218ENST00000598907 SNED1Q8TER0 1413 aa18.66■□□□□ 0.58
SHKBP1-218ENST00000598907 MORC1Q86VD1 984 aa18.66■□□□□ 0.58
SHKBP1-218ENST00000598907 LARGE2Q8N3Y3 721 aa18.66■□□□□ 0.58
SHKBP1-218ENST00000598907 PANK3Q9H999 370 aa18.66■□□□□ 0.58
SHKBP1-218ENST00000598907 PER1O15534 1290 aaPredicted RBP18.65■□□□□ 0.58
SHKBP1-218ENST00000598907 SLC51AQ86UW1 340 aa18.65■□□□□ 0.58
SHKBP1-218ENST00000598907 PSMD1Q99460 953 aa18.65■□□□□ 0.58
SHKBP1-218ENST00000598907 TEX13AQ9BXU3 409 aaPredicted RBP18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms