RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 XAGE3Q8WTP9 111 aa18.4■□□□□ 0.54
SHKBP1-217ENST00000598558 TWISTNBQ3B726 338 aaPredicted RBP18.39■□□□□ 0.53
SHKBP1-217ENST00000598558 KLHL34Q8N239 644 aa18.39■□□□□ 0.53
SHKBP1-217ENST00000598558 AIMP1Q12904 312 aaKnown RBP18.38■□□□□ 0.53
SHKBP1-217ENST00000598558 NPM2Q86SE8 214 aaKnown RBP18.38■□□□□ 0.53
SHKBP1-217ENST00000598558 TRMT2AQ8IZ69 625 aaKnown RBP18.38■□□□□ 0.53
SHKBP1-217ENST00000598558 ZBTB3Q9H5J0 574 aa18.38■□□□□ 0.53
SHKBP1-217ENST00000598558 PHAXQ9H814 394 aaKnown RBP18.38■□□□□ 0.53
SHKBP1-217ENST00000598558 PARP3Q9Y6F1 533 aa18.38■□□□□ 0.53
SHKBP1-217ENST00000598558 MAP3K15Q6ZN16 1313 aa18.38■□□□□ 0.53
SHKBP1-217ENST00000598558 MYH16Q9H6N6 1097 aa18.37■□□□□ 0.53
SHKBP1-217ENST00000598558 DBF4Q9UBU7 674 aaPredicted RBP18.37■□□□□ 0.53
SHKBP1-217ENST00000598558 ERVV-1B6SEH8 477 aa18.36■□□□□ 0.53
SHKBP1-217ENST00000598558 SERPINB2P05120 415 aa18.36■□□□□ 0.53
SHKBP1-217ENST00000598558 HNRNPUQ00839 825 aaKnown RBP eCLIP18.36■□□□□ 0.53
SHKBP1-217ENST00000598558 CLEC4GQ6UXB4 293 aa18.36■□□□□ 0.53
SHKBP1-217ENST00000598558 E9PSI1 815 aa18.35■□□□□ 0.53
SHKBP1-217ENST00000598558 G2E3Q7L622 706 aa18.35■□□□□ 0.53
SHKBP1-217ENST00000598558 CCDC24Q8N4L8 307 aa18.35■□□□□ 0.53
SHKBP1-217ENST00000598558 CCDC30Q5VVM6 783 aa18.34■□□□□ 0.53
SHKBP1-217ENST00000598558 KIF6Q6ZMV9 814 aa18.34■□□□□ 0.53
SHKBP1-217ENST00000598558 HYPKQ9NX55 129 aa18.34■□□□□ 0.53
SHKBP1-217ENST00000598558 CD2APQ9Y5K6 639 aa18.34■□□□□ 0.53
SHKBP1-217ENST00000598558 SCN7AQ01118 1682 aa18.34■□□□□ 0.53
SHKBP1-217ENST00000598558 GIGYF2Q6Y7W6 1299 aaKnown RBP18.33■□□□□ 0.52
SHKBP1-217ENST00000598558 SETDB2Q96T68 719 aa18.33■□□□□ 0.52
SHKBP1-217ENST00000598558 RGL2O15211 777 aa18.32■□□□□ 0.52
SHKBP1-217ENST00000598558 GPTP24298 496 aa18.32■□□□□ 0.52
SHKBP1-217ENST00000598558 ZNF34Q8IZ26 560 aa18.32■□□□□ 0.52
SHKBP1-217ENST00000598558 NIP7Q9Y221 180 aaKnown RBP eCLIP18.32■□□□□ 0.52
SHKBP1-217ENST00000598558 C10orf71Q711Q0 1435 aa18.32■□□□□ 0.52
SHKBP1-217ENST00000598558 CARMIL3Q8ND23 1372 aa18.31■□□□□ 0.52
SHKBP1-217ENST00000598558 UBN2Q6ZU65 1347 aa18.31■□□□□ 0.52
SHKBP1-217ENST00000598558 FAM177BA6PVY3 158 aa18.31■□□□□ 0.52
SHKBP1-217ENST00000598558 SLC4A2P04920 1241 aa18.31■□□□□ 0.52
SHKBP1-217ENST00000598558 PRR5LQ6MZQ0 368 aa18.31■□□□□ 0.52
SHKBP1-217ENST00000598558 ANKRD13DQ6ZTN6 518 aa18.31■□□□□ 0.52
SHKBP1-217ENST00000598558 ZNF652Q9Y2D9 606 aa18.31■□□□□ 0.52
SHKBP1-217ENST00000598558 BCORQ6W2J9 1755 aa18.3■□□□□ 0.52
SHKBP1-217ENST00000598558 A0A0G2JLW4 131 aa18.3■□□□□ 0.52
SHKBP1-217ENST00000598558 KCNA3P22001 575 aa18.3■□□□□ 0.52
SHKBP1-217ENST00000598558 SUSD4Q5VX71 490 aa18.3■□□□□ 0.52
SHKBP1-217ENST00000598558 PLBD2Q8NHP8 589 aa18.3■□□□□ 0.52
SHKBP1-217ENST00000598558 ZNF428Q96B54 188 aa18.29■□□□□ 0.52
SHKBP1-217ENST00000598558 WWC3Q9ULE0 1092 aa18.29■□□□□ 0.52
SHKBP1-217ENST00000598558 DPEP1P16444 411 aa18.28■□□□□ 0.52
SHKBP1-217ENST00000598558 CHRNA5P30532 468 aa18.28■□□□□ 0.52
SHKBP1-217ENST00000598558 TCIRG1Q13488 830 aa18.28■□□□□ 0.52
SHKBP1-217ENST00000598558 ATP10DQ9P241 1426 aa18.28■□□□□ 0.52
SHKBP1-217ENST00000598558 PXDNLA1KZ92 1463 aa18.27■□□□□ 0.52
SHKBP1-217ENST00000598558 STK31Q9BXU1 1019 aa18.27■□□□□ 0.52
SHKBP1-217ENST00000598558 NRXN2Q9P2S2 1712 aa18.26■□□□□ 0.51
SHKBP1-217ENST00000598558 ATP5J2-PTCD1G3V325 749 aa18.26■□□□□ 0.51
SHKBP1-217ENST00000598558 TGFB2P61812 414 aa18.26■□□□□ 0.51
SHKBP1-217ENST00000598558 NLRP10Q86W26 655 aa18.26■□□□□ 0.51
SHKBP1-217ENST00000598558 NBPF5PQ86XG9 351 aaPredicted RBP18.26■□□□□ 0.51
SHKBP1-217ENST00000598558 NUTM1Q86Y26 1132 aa18.26■□□□□ 0.51
SHKBP1-217ENST00000598558 SYNE4Q8N205 404 aa18.26■□□□□ 0.51
SHKBP1-217ENST00000598558 ISCA1Q9BUE6 129 aa18.26■□□□□ 0.51
SHKBP1-217ENST00000598558 NTSR2O95665 410 aa18.25■□□□□ 0.51
SHKBP1-217ENST00000598558 YBX3P16989 372 aaKnown RBP eCLIP18.25■□□□□ 0.51
SHKBP1-217ENST00000598558 CNBD1Q8NA66 436 aa18.25■□□□□ 0.51
SHKBP1-217ENST00000598558 CHMP4AQ9BY43 222 aa18.25■□□□□ 0.51
SHKBP1-217ENST00000598558 ADCY9O60503 1353 aa18.25■□□□□ 0.51
SHKBP1-217ENST00000598558 PI4KAP2A4QPH2 592 aa18.24■□□□□ 0.51
SHKBP1-217ENST00000598558 FLIIQ13045 1269 aa18.24■□□□□ 0.51
SHKBP1-217ENST00000598558 ERFEQ4G0M1 354 aa18.24■□□□□ 0.51
SHKBP1-217ENST00000598558 RIC3Q7Z5B4 369 aa18.24■□□□□ 0.51
SHKBP1-217ENST00000598558 MRPL50Q8N5N7 158 aaKnown RBP18.24■□□□□ 0.51
SHKBP1-217ENST00000598558 PI4KAP1Q8N8J0 262 aa18.24■□□□□ 0.51
SHKBP1-217ENST00000598558 SSH1Q8WYL5 1049 aa18.24■□□□□ 0.51
SHKBP1-217ENST00000598558 BRIP1Q9BX63 1249 aa18.24■□□□□ 0.51
SHKBP1-217ENST00000598558 ZBED9Q6R2W3 1325 aa18.23■□□□□ 0.51
SHKBP1-217ENST00000598558 AFDNP55196 1824 aaKnown RBP18.23■□□□□ 0.51
SHKBP1-217ENST00000598558 ABCC12Q96J65 1359 aa18.23■□□□□ 0.51
SHKBP1-217ENST00000598558 KSR2Q6VAB6 950 aa18.23■□□□□ 0.51
SHKBP1-217ENST00000598558 TPTE2Q6XPS3 522 aa18.23■□□□□ 0.51
SHKBP1-217ENST00000598558 MAP3K2Q9Y2U5 619 aa18.23■□□□□ 0.51
SHKBP1-217ENST00000598558 KIAA1551Q9HCM1 1747 aa18.23■□□□□ 0.51
SHKBP1-217ENST00000598558 HSP90AB3PQ58FF7 597 aa18.22■□□□□ 0.51
SHKBP1-217ENST00000598558 C3orf67Q6ZVT6 689 aa18.22■□□□□ 0.51
SHKBP1-217ENST00000598558 MYD88Q99836 296 aa18.22■□□□□ 0.51
SHKBP1-217ENST00000598558 METTL22Q9BUU2 404 aaPredicted RBP18.22■□□□□ 0.51
SHKBP1-217ENST00000598558 IGKV5-2P06315 115 aa18.21■□□□□ 0.51
SHKBP1-217ENST00000598558 TRIM28Q13263 835 aaKnown RBP18.21■□□□□ 0.51
SHKBP1-217ENST00000598558 PARP10Q53GL7 1025 aa18.21■□□□□ 0.51
SHKBP1-217ENST00000598558 C2CD5Q86YS7 1000 aa18.21■□□□□ 0.51
SHKBP1-217ENST00000598558 PELP1Q8IZL8 1130 aaKnown RBP18.21■□□□□ 0.51
SHKBP1-217ENST00000598558 BCL2L13Q9BXK5 485 aa18.21■□□□□ 0.51
SHKBP1-217ENST00000598558 NUP98P52948 1817 aa18.21■□□□□ 0.51
SHKBP1-217ENST00000598558 KIF13BQ9NQT8 1826 aa18.21■□□□□ 0.51
SHKBP1-217ENST00000598558 KLRG2A4D1S0 409 aaPredicted RBP18.2■□□□□ 0.5
SHKBP1-217ENST00000598558 F6X3S4 739 aa18.2■□□□□ 0.5
SHKBP1-217ENST00000598558 ST5P78524 1137 aa18.2■□□□□ 0.5
SHKBP1-217ENST00000598558 UTP14AQ9BVJ6 771 aaKnown RBP18.2■□□□□ 0.5
SHKBP1-217ENST00000598558 DDX58O95786 925 aaKnown RBP18.19■□□□□ 0.5
SHKBP1-217ENST00000598558 FKBP5Q13451 457 aaPredicted RBP18.19■□□□□ 0.5
SHKBP1-217ENST00000598558 GPR162Q16538 588 aa18.19■□□□□ 0.5
SHKBP1-217ENST00000598558 PPP1R42Q7Z4L9 355 aa18.19■□□□□ 0.5
SHKBP1-217ENST00000598558 JARID2Q92833 1246 aaPredicted RBP18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms