RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 FER1L6Q2WGJ9 1857 aa16.73■□□□□ 0.27
TRIM28-212ENST00000597995 RGL2O15211 777 aa16.72■□□□□ 0.27
TRIM28-212ENST00000597995 SNRPA1P09661 255 aaKnown RBP16.72■□□□□ 0.27
TRIM28-212ENST00000597995 RTF1Q92541 710 aaKnown RBP16.72■□□□□ 0.27
TRIM28-212ENST00000597995 MASTLQ96GX5 879 aa16.72■□□□□ 0.27
TRIM28-212ENST00000597995 TAOK3Q9H2K8 898 aa16.72■□□□□ 0.27
TRIM28-212ENST00000597995 DICER1Q9UPY3 1922 aaKnown RBP16.72■□□□□ 0.27
TRIM28-212ENST00000597995 ZNF219Q9P2Y4 722 aaPredicted RBP16.71■□□□□ 0.27
TRIM28-212ENST00000597995 ZNF652Q9Y2D9 606 aa16.71■□□□□ 0.27
TRIM28-212ENST00000597995 COL11A2P13942 1736 aaPredicted RBP16.7■□□□□ 0.26
TRIM28-212ENST00000597995 HTATSF1O43719 755 aaKnown RBP16.7■□□□□ 0.26
TRIM28-212ENST00000597995 PRPF40BQ6NWY9 871 aaKnown RBP16.7■□□□□ 0.26
TRIM28-212ENST00000597995 BCORQ6W2J9 1755 aa16.69■□□□□ 0.26
TRIM28-212ENST00000597995 SLX4Q8IY92 1834 aa16.69■□□□□ 0.26
TRIM28-212ENST00000597995 U2AF1L5P0DN76 240 aaPredicted RBP16.69■□□□□ 0.26
TRIM28-212ENST00000597995 U2AF1Q01081 240 aaKnown RBP eCLIP16.69■□□□□ 0.261e-6■□□□□ 10.2
TRIM28-212ENST00000597995 COL13A1Q5TAT6 717 aaPredicted RBP16.69■□□□□ 0.26
TRIM28-212ENST00000597995 NBPF5PQ86XG9 351 aaPredicted RBP16.69■□□□□ 0.26
TRIM28-212ENST00000597995 KLRG2A4D1S0 409 aaPredicted RBP16.68■□□□□ 0.26
TRIM28-212ENST00000597995 PPP2R1AP30153 589 aa16.68■□□□□ 0.26
TRIM28-212ENST00000597995 MCM10Q7L590 875 aa16.68■□□□□ 0.26
TRIM28-212ENST00000597995 C7orf43Q8WVR3 580 aa16.68■□□□□ 0.26
TRIM28-212ENST00000597995 PCNTO95613 3336 aa16.68■□□□□ 0.26
TRIM28-212ENST00000597995 PRAMEF22A3QJZ6 481 aa16.67■□□□□ 0.26
TRIM28-212ENST00000597995 NPR1P16066 1061 aa16.67■□□□□ 0.26
TRIM28-212ENST00000597995 PIP4K2AP48426 406 aaPredicted RBP16.67■□□□□ 0.26
TRIM28-212ENST00000597995 TPTE2Q6XPS3 522 aa16.67■□□□□ 0.26
TRIM28-212ENST00000597995 ARFGEF2Q9Y6D5 1785 aa16.66■□□□□ 0.26
TRIM28-212ENST00000597995 NBPF26B4DH59 902 aa16.66■□□□□ 0.26
TRIM28-212ENST00000597995 DDNO94850 711 aaPredicted RBP16.66■□□□□ 0.26
TRIM28-212ENST00000597995 CCDC93Q567U6 631 aa16.66■□□□□ 0.26
TRIM28-212ENST00000597995 CHADLQ6NUI6 762 aa16.66■□□□□ 0.26
TRIM28-212ENST00000597995 NBPF10Q6P3W6 841 aaKnown RBP16.66■□□□□ 0.26
TRIM28-212ENST00000597995 NBPF15Q8N660 670 aa16.66■□□□□ 0.26
TRIM28-212ENST00000597995 TAF7Q15545 349 aaPredicted RBP16.65■□□□□ 0.26
TRIM28-212ENST00000597995 NIP7Q9Y221 180 aaKnown RBP eCLIP16.65■□□□□ 0.26
TRIM28-212ENST00000597995 IQCA1LA6NCM1 817 aa16.64■□□□□ 0.25
TRIM28-212ENST00000597995 DCTN1Q14203 1278 aa16.64■□□□□ 0.25
TRIM28-212ENST00000597995 CREBZFQ9NS37 354 aa16.64■□□□□ 0.25
TRIM28-212ENST00000597995 HSPA1AP0DMV8 641 aaKnown RBP16.63■□□□□ 0.25
TRIM28-212ENST00000597995 HSPA1BP0DMV9 641 aaKnown RBP16.63■□□□□ 0.25
TRIM28-212ENST00000597995 FKBP4Q02790 459 aaKnown RBP eCLIP16.63■□□□□ 0.25
TRIM28-212ENST00000597995 L3MBTL3Q96JM7 780 aaPredicted RBP16.63■□□□□ 0.25
TRIM28-212ENST00000597995 CACNA1SQ13698 1873 aa16.63■□□□□ 0.25
TRIM28-212ENST00000597995 ALDH1B1P30837 517 aa16.62■□□□□ 0.25
TRIM28-212ENST00000597995 RTKN2Q8IZC4 609 aa16.62■□□□□ 0.25
TRIM28-212ENST00000597995 TNS4Q8IZW8 715 aa16.62■□□□□ 0.25
TRIM28-212ENST00000597995 PNISRQ8TF01 805 aaKnown RBP16.62■□□□□ 0.25
TRIM28-212ENST00000597995 LDHDQ86WU2 507 aa16.61■□□□□ 0.25
TRIM28-212ENST00000597995 NEFMP07197 916 aa16.6■□□□□ 0.25
TRIM28-212ENST00000597995 POTEIP0CG38 1075 aa16.6■□□□□ 0.25
TRIM28-212ENST00000597995 POTEJP0CG39 1038 aa16.6■□□□□ 0.25
TRIM28-212ENST00000597995 HLFQ16534 295 aa16.6■□□□□ 0.25
TRIM28-212ENST00000597995 TAF1DQ9H5J8 278 aaPredicted RBP16.6■□□□□ 0.25
TRIM28-212ENST00000597995 SCN4AP35499 1836 aa16.6■□□□□ 0.25
TRIM28-212ENST00000597995 ERVV-1B6SEH8 477 aa16.59■□□□□ 0.25
TRIM28-212ENST00000597995 GTF2E1P29083 439 aaPredicted RBP16.59■□□□□ 0.25
TRIM28-212ENST00000597995 NYXQ9GZU5 481 aa16.59■□□□□ 0.25
TRIM28-212ENST00000597995 ZNF277Q9NRM2 450 aaPredicted RBP16.59■□□□□ 0.25
TRIM28-212ENST00000597995 FAM177BA6PVY3 158 aa16.58■□□□□ 0.24
TRIM28-212ENST00000597995 CRY2Q49AN0 593 aa16.58■□□□□ 0.24
TRIM28-212ENST00000597995 MIS18AQ9NYP9 233 aa16.58■□□□□ 0.24
TRIM28-212ENST00000597995 PASKQ96RG2 1323 aa16.58■□□□□ 0.24
TRIM28-212ENST00000597995 FZD9O00144 591 aa16.57■□□□□ 0.24
TRIM28-212ENST00000597995 IARSP41252 1262 aaKnown RBP16.57■□□□□ 0.24
TRIM28-212ENST00000597995 CC2D2BQ6DHV5 1058 aa16.57■□□□□ 0.24
TRIM28-212ENST00000597995 HACL1Q9UJ83 578 aa16.57■□□□□ 0.24
TRIM28-212ENST00000597995 MAP3K15Q6ZN16 1313 aa16.56■□□□□ 0.24
TRIM28-212ENST00000597995 ZNF541Q9H0D2 1346 aa16.56■□□□□ 0.24
TRIM28-212ENST00000597995 EIF4A1P60842 406 aaKnown RBP16.56■□□□□ 0.24
TRIM28-212ENST00000597995 OLFM4Q6UX06 510 aa16.56■□□□□ 0.24
TRIM28-212ENST00000597995 SYNE4Q8N205 404 aa16.56■□□□□ 0.24
TRIM28-212ENST00000597995 PSMD1Q99460 953 aa16.56■□□□□ 0.24
TRIM28-212ENST00000597995 MKRN1Q9UHC7 482 aaKnown RBP16.56■□□□□ 0.24
TRIM28-212ENST00000597995 LAMB4A4D0S4 1761 aa16.56■□□□□ 0.24
TRIM28-212ENST00000597995 CNTNAP1P78357 1384 aa16.55■□□□□ 0.24
TRIM28-212ENST00000597995 ITGBL1O95965 494 aaPredicted RBP16.55■□□□□ 0.24
TRIM28-212ENST00000597995 GRIPAP1Q4V328 841 aa16.55■□□□□ 0.24
TRIM28-212ENST00000597995 PNMA8AQ86V59 439 aaPredicted RBP16.55■□□□□ 0.24
TRIM28-212ENST00000597995 PLEKHF1Q96S99 279 aa16.55■□□□□ 0.24
TRIM28-212ENST00000597995 PNNQ9H307 717 aaKnown RBP16.55■□□□□ 0.24
TRIM28-212ENST00000597995 IBTKQ9P2D0 1353 aaPredicted RBP16.54■□□□□ 0.24
TRIM28-212ENST00000597995 HOXA10P31260 410 aaPredicted RBP16.54■□□□□ 0.24
TRIM28-212ENST00000597995 EPHX2P34913 555 aa16.54■□□□□ 0.24
TRIM28-212ENST00000597995 NFE2L2Q16236 605 aa16.54■□□□□ 0.24
TRIM28-212ENST00000597995 KIF6Q6ZMV9 814 aa16.54■□□□□ 0.24
TRIM28-212ENST00000597995 GPC2Q8N158 579 aa16.54■□□□□ 0.24
TRIM28-212ENST00000597995 NGEFQ8N5V2 710 aa16.54■□□□□ 0.24
TRIM28-212ENST00000597995 RRP7AQ9Y3A4 280 aaKnown RBP16.54■□□□□ 0.24
TRIM28-212ENST00000597995 RIC1Q4ADV7 1423 aa16.53■□□□□ 0.24
TRIM28-212ENST00000597995 SNED1Q8TER0 1413 aa16.53■□□□□ 0.24
TRIM28-212ENST00000597995 TMEM88BA6NKF7 163 aa16.53■□□□□ 0.24
TRIM28-212ENST00000597995 EAPPQ56P03 285 aaPredicted RBP16.53■□□□□ 0.24
TRIM28-212ENST00000597995 TTLL7Q6ZT98 887 aa16.53■□□□□ 0.24
TRIM28-212ENST00000597995 NUTM1Q86Y26 1132 aa16.53■□□□□ 0.24
TRIM28-212ENST00000597995 JDP2Q8WYK2 163 aa16.53■□□□□ 0.24
TRIM28-212ENST00000597995 NUP98P52948 1817 aa16.53■□□□□ 0.24
TRIM28-212ENST00000597995 KDM3BQ7LBC6 1761 aa16.53■□□□□ 0.24
TRIM28-212ENST00000597995 DLG5Q8TDM6 1919 aa16.53■□□□□ 0.24
TRIM28-212ENST00000597995 ABCC12Q96J65 1359 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms