RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	CCDC88A	Q3V6T2	1871 aa		14	□□□□□ -0.17
LSM4-205	ENST00000597776	GLTPD2	A6NH11	291 aa		14	□□□□□ -0.17
LSM4-205	ENST00000597776	TAF7	Q15545	349 aa	Predicted RBP	14	□□□□□ -0.17
LSM4-205	ENST00000597776	PDZRN3	Q9UPQ7	1066 aa		14	□□□□□ -0.17
LSM4-205	ENST00000597776	SRGN	P10124	158 aa		13.99	□□□□□ -0.17
LSM4-205	ENST00000597776	IFFO2	Q5TF58	517 aa		13.99	□□□□□ -0.17
LSM4-205	ENST00000597776	PRPF40B	Q6NWY9	871 aa	Known RBP	13.99	□□□□□ -0.17
LSM4-205	ENST00000597776	NBPF5P	Q86XG9	351 aa	Predicted RBP	13.99	□□□□□ -0.17
LSM4-205	ENST00000597776	ZNF652	Q9Y2D9	606 aa		13.99	□□□□□ -0.17
LSM4-205	ENST00000597776	CACNA1S	Q13698	1873 aa		13.99	□□□□□ -0.17
LSM4-205	ENST00000597776	SLX4	Q8IY92	1834 aa		13.99	□□□□□ -0.17
LSM4-205	ENST00000597776	FER1L6	Q2WGJ9	1857 aa		13.98	□□□□□ -0.17
LSM4-205	ENST00000597776	FAM177B	A6PVY3	158 aa		13.98	□□□□□ -0.17
LSM4-205	ENST00000597776	STYK1	Q6J9G0	422 aa		13.98	□□□□□ -0.17
LSM4-205	ENST00000597776	CLEC4G	Q6UXB4	293 aa		13.98	□□□□□ -0.17
LSM4-205	ENST00000597776	THUMPD2	Q9BTF0	503 aa	Known RBP	13.98	□□□□□ -0.17
LSM4-205	ENST00000597776	DLG5	Q8TDM6	1919 aa		13.98	□□□□□ -0.17
LSM4-205	ENST00000597776	LAMB4	A4D0S4	1761 aa		13.97	□□□□□ -0.17
LSM4-205	ENST00000597776	VEGFA	P15692	232 aa	Predicted RBP	13.97	□□□□□ -0.17
LSM4-205	ENST00000597776	HLF	Q16534	295 aa		13.97	□□□□□ -0.17
LSM4-205	ENST00000597776	ERFE	Q4G0M1	354 aa		13.97	□□□□□ -0.17
LSM4-205	ENST00000597776	SMC1B	Q8NDV3	1235 aa		13.97	□□□□□ -0.17
LSM4-205	ENST00000597776	CNKSR1	Q969H4	720 aa		13.97	□□□□□ -0.17
LSM4-205	ENST00000597776	MASTL	Q96GX5	879 aa		13.97	□□□□□ -0.17
LSM4-205	ENST00000597776	PLEKHF1	Q96S99	279 aa		13.97	□□□□□ -0.17
LSM4-205	ENST00000597776	TAOK3	Q9H2K8	898 aa		13.97	□□□□□ -0.17
LSM4-205	ENST00000597776	NIP7	Q9Y221	180 aa	Known RBP eCLIP	13.97	□□□□□ -0.17
LSM4-205	ENST00000597776	KDM3B	Q7LBC6	1761 aa		13.96	□□□□□ -0.17
LSM4-205	ENST00000597776	NEFM	P07197	916 aa		13.96	□□□□□ -0.17
LSM4-205	ENST00000597776	NGEF	Q8N5V2	710 aa		13.96	□□□□□ -0.17
LSM4-205	ENST00000597776	ARFGEF2	Q9Y6D5	1785 aa		13.96	□□□□□ -0.18
LSM4-205	ENST00000597776	LTBP3	Q9NS15	1303 aa		13.95	□□□□□ -0.18
LSM4-205	ENST00000597776	POTEC	B2RU33	542 aa		13.95	□□□□□ -0.18
LSM4-205	ENST00000597776	NFE2L2	Q16236	605 aa		13.95	□□□□□ -0.18
LSM4-205	ENST00000597776	KLRG1	Q96E93	195 aa		13.95	□□□□□ -0.18
LSM4-205	ENST00000597776	NPR1	P16066	1061 aa		13.94	□□□□□ -0.18
LSM4-205	ENST00000597776	EIF4A1	P60842	406 aa	Known RBP	13.94	□□□□□ -0.18
LSM4-205	ENST00000597776	DPY19L2	Q6NUT2	758 aa		13.94	□□□□□ -0.18
LSM4-205	ENST00000597776	DICER1	Q9UPY3	1922 aa	Known RBP	13.94	□□□□□ -0.18
LSM4-205	ENST00000597776	MAPK8IP3	Q9UPT6	1336 aa		13.93	□□□□□ -0.18
LSM4-205	ENST00000597776	RGL2	O15211	777 aa		13.93	□□□□□ -0.18
LSM4-205	ENST00000597776	SOGA3	Q5TF21	947 aa		13.93	□□□□□ -0.18
LSM4-205	ENST00000597776	OLFM4	Q6UX06	510 aa		13.93	□□□□□ -0.18
LSM4-205	ENST00000597776	TPTE2	Q6XPS3	522 aa		13.93	□□□□□ -0.18
LSM4-205	ENST00000597776	PNISR	Q8TF01	805 aa	Known RBP	13.93	□□□□□ -0.18
LSM4-205	ENST00000597776	C7orf43	Q8WVR3	580 aa		13.93	□□□□□ -0.18
LSM4-205	ENST00000597776	RRP7A	Q9Y3A4	280 aa	Known RBP	13.93	□□□□□ -0.18
LSM4-205	ENST00000597776	ABCC12	Q96J65	1359 aa		13.93	□□□□□ -0.18
LSM4-205	ENST00000597776	PCNT	O95613	3336 aa		13.93	□□□□□ -0.18
LSM4-205	ENST00000597776	KLRG2	A4D1S0	409 aa	Predicted RBP	13.92	□□□□□ -0.18
LSM4-205	ENST00000597776	DDN	O94850	711 aa	Predicted RBP	13.92	□□□□□ -0.18
LSM4-205	ENST00000597776	MYL6B	P14649	208 aa		13.92	□□□□□ -0.18
LSM4-205	ENST00000597776	CCDC93	Q567U6	631 aa		13.92	□□□□□ -0.18
LSM4-205	ENST00000597776	TTLL7	Q6ZT98	887 aa		13.92	□□□□□ -0.18
LSM4-205	ENST00000597776	GTF2E1	P29083	439 aa	Predicted RBP	13.91	□□□□□ -0.18
LSM4-205	ENST00000597776	NUTM1	Q86Y26	1132 aa		13.91	□□□□□ -0.18
LSM4-205	ENST00000597776	ZNF277	Q9NRM2	450 aa	Predicted RBP	13.91	□□□□□ -0.18
LSM4-205	ENST00000597776	MAP3K15	Q6ZN16	1313 aa		13.9	□□□□□ -0.18
LSM4-205	ENST00000597776	GPT	P24298	496 aa		13.9	□□□□□ -0.18
LSM4-205	ENST00000597776	KIF6	Q6ZMV9	814 aa		13.9	□□□□□ -0.18
LSM4-205	ENST00000597776	JMY	Q8N9B5	988 aa		13.9	□□□□□ -0.18
LSM4-205	ENST00000597776	ZBTB3	Q9H5J0	574 aa		13.9	□□□□□ -0.18
LSM4-205	ENST00000597776	ERVV-1	B6SEH8	477 aa		13.89	□□□□□ -0.19
LSM4-205	ENST00000597776	POTEI	P0CG38	1075 aa		13.89	□□□□□ -0.19
LSM4-205	ENST00000597776	POTEJ	P0CG39	1038 aa		13.89	□□□□□ -0.19
LSM4-205	ENST00000597776	FKBP4	Q02790	459 aa	Known RBP eCLIP	13.89	□□□□□ -0.19
LSM4-205	ENST00000597776	PNN	Q9H307	717 aa	Known RBP	13.89	□□□□□ -0.19
LSM4-205	ENST00000597776	TSPYL4	Q9UJ04	414 aa		13.89	□□□□□ -0.19
LSM4-205	ENST00000597776	UBN2	Q6ZU65	1347 aa		13.89	□□□□□ -0.19
LSM4-205	ENST00000597776	NUP98	P52948	1817 aa		13.88	□□□□□ -0.19
LSM4-205	ENST00000597776	NYX	Q9GZU5	481 aa		13.88	□□□□□ -0.19
LSM4-205	ENST00000597776	ZNF541	Q9H0D2	1346 aa		13.88	□□□□□ -0.19
LSM4-205	ENST00000597776	RIPK4	P57078	832 aa		13.87	□□□□□ -0.19
LSM4-205	ENST00000597776	CRY2	Q49AN0	593 aa		13.87	□□□□□ -0.19
LSM4-205	ENST00000597776	SUSD4	Q5VX71	490 aa		13.87	□□□□□ -0.19
LSM4-205	ENST00000597776	SLC51A	Q86UW1	340 aa		13.87	□□□□□ -0.19
LSM4-205	ENST00000597776	ANXA1	P04083	346 aa		13.86	□□□□□ -0.19
LSM4-205	ENST00000597776	EIF2S2	P20042	333 aa	Known RBP	13.86	□□□□□ -0.19
LSM4-205	ENST00000597776	ALDH1B1	P30837	517 aa		13.86	□□□□□ -0.19
LSM4-205	ENST00000597776	RALBP1	Q15311	655 aa		13.86	□□□□□ -0.19
LSM4-205	ENST00000597776	PROSER3	Q2NL68	480 aa		13.86	□□□□□ -0.19
LSM4-205	ENST00000597776	CHADL	Q6NUI6	762 aa		13.86	□□□□□ -0.19
LSM4-205	ENST00000597776	RTKN2	Q8IZC4	609 aa		13.86	□□□□□ -0.19
LSM4-205	ENST00000597776	SYNE4	Q8N205	404 aa		13.86	□□□□□ -0.19
LSM4-205	ENST00000597776	SNED1	Q8TER0	1413 aa		13.86	□□□□□ -0.19
LSM4-205	ENST00000597776	IBTK	Q9P2D0	1353 aa	Predicted RBP	13.85	□□□□□ -0.19
LSM4-205	ENST00000597776	NTSR2	O95665	410 aa		13.85	□□□□□ -0.19
LSM4-205	ENST00000597776	IARS	P41252	1262 aa	Known RBP	13.85	□□□□□ -0.19
LSM4-205	ENST00000597776	TMPO	P42166	694 aa	Known RBP	13.85	□□□□□ -0.19
LSM4-205	ENST00000597776	DDX10	Q13206	875 aa	Known RBP	13.85	□□□□□ -0.19
LSM4-205	ENST00000597776	PDIA6	Q15084	440 aa		13.85	□□□□□ -0.19
LSM4-205	ENST00000597776	C3orf67	Q6ZVT6	689 aa		13.85	□□□□□ -0.19
LSM4-205	ENST00000597776	LRP10	Q7Z4F1	713 aa		13.85	□□□□□ -0.19
LSM4-205	ENST00000597776	CCDC146	Q8IYE0	955 aa		13.85	□□□□□ -0.19
LSM4-205	ENST00000597776	ZNF34	Q8IZ26	560 aa		13.85	□□□□□ -0.19
LSM4-205	ENST00000597776	RPGR	Q92834	1020 aa	Known RBP	13.85	□□□□□ -0.19
LSM4-205	ENST00000597776	L3MBTL3	Q96JM7	780 aa	Predicted RBP	13.85	□□□□□ -0.19
LSM4-205	ENST00000597776	TAF1D	Q9H5J8	278 aa	Predicted RBP	13.85	□□□□□ -0.19
LSM4-205	ENST00000597776	ERBB4	Q15303	1308 aa		13.85	□□□□□ -0.19
LSM4-205	ENST00000597776	RIC1	Q4ADV7	1423 aa		13.84	□□□□□ -0.19

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