RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 MAP3K15Q6ZN16 1313 aa33.25■■■□□ 2.91
TRIM28-204ENST00000594806 E9PSI1 815 aa33.24■■■□□ 2.91
TRIM28-204ENST00000594806 POLRMTO00411 1230 aaKnown RBP33.24■■■□□ 2.91
TRIM28-204ENST00000594806 TSPYL6Q8N831 410 aa33.24■■■□□ 2.91
TRIM28-204ENST00000594806 DDR1Q08345 913 aa33.23■■■□□ 2.91
TRIM28-204ENST00000594806 PROSER3Q2NL68 480 aa33.23■■■□□ 2.91
TRIM28-204ENST00000594806 TBC1D9BQ66K14 1250 aa33.22■■■□□ 2.91
TRIM28-204ENST00000594806 TTLL7Q6ZT98 887 aa33.21■■■□□ 2.91
TRIM28-204ENST00000594806 KLHL34Q8N239 644 aa33.21■■■□□ 2.91
TRIM28-204ENST00000594806 SETDB2Q96T68 719 aa33.21■■■□□ 2.91
TRIM28-204ENST00000594806 ANXA1P04083 346 aa33.2■■■□□ 2.91
TRIM28-204ENST00000594806 NUP98P52948 1817 aa33.2■■■□□ 2.91
TRIM28-204ENST00000594806 KIF13BQ9NQT8 1826 aa33.19■■■□□ 2.9
TRIM28-204ENST00000594806 EXOSC9Q06265 439 aaKnown RBP33.19■■■□□ 2.9
TRIM28-204ENST00000594806 COPS6Q7L5N1 327 aa33.19■■■□□ 2.9
TRIM28-204ENST00000594806 CARMIL3Q8ND23 1372 aa33.19■■■□□ 2.9
TRIM28-204ENST00000594806 CACNA1FO60840 1977 aa33.18■■■□□ 2.9
TRIM28-204ENST00000594806 SERPINB2P05120 415 aa33.18■■■□□ 2.9
TRIM28-204ENST00000594806 BICDL1Q6ZP65 573 aa33.18■■■□□ 2.9
TRIM28-204ENST00000594806 XAGE3Q8WTP9 111 aa33.18■■■□□ 2.9
TRIM28-204ENST00000594806 NRXN2Q9P2S2 1712 aa33.18■■■□□ 2.9
TRIM28-204ENST00000594806 AFDNP55196 1824 aaKnown RBP33.17■■■□□ 2.9
TRIM28-204ENST00000594806 SLFN5Q08AF3 891 aa33.17■■■□□ 2.9
TRIM28-204ENST00000594806 STK31Q9BXU1 1019 aa33.17■■■□□ 2.9
TRIM28-204ENST00000594806 VAMP4O75379 141 aa33.16■■■□□ 2.9
TRIM28-204ENST00000594806 HLFQ16534 295 aa33.16■■■□□ 2.9
TRIM28-204ENST00000594806 GIGYF2Q6Y7W6 1299 aaKnown RBP33.16■■■□□ 2.9
TRIM28-204ENST00000594806 C10orf71Q711Q0 1435 aa33.16■■■□□ 2.9
TRIM28-204ENST00000594806 ZBTB3Q9H5J0 574 aa33.15■■■□□ 2.9
TRIM28-204ENST00000594806 ATP10DQ9P241 1426 aa33.14■■■□□ 2.9
TRIM28-204ENST00000594806 TGFB2P61812 414 aa33.14■■■□□ 2.9
TRIM28-204ENST00000594806 AIMP1Q12904 312 aaKnown RBP33.14■■■□□ 2.9
TRIM28-204ENST00000594806 NIP7Q9Y221 180 aaKnown RBP eCLIP33.14■■■□□ 2.9
TRIM28-204ENST00000594806 HSP90AB3PQ58FF7 597 aa33.13■■■□□ 2.89
TRIM28-204ENST00000594806 PLBD2Q8NHP8 589 aa33.12■■■□□ 2.89
TRIM28-204ENST00000594806 HNRNPUQ00839 825 aaKnown RBP eCLIP33.11■■■□□ 2.89
TRIM28-204ENST00000594806 ANKRD13DQ6ZTN6 518 aa33.11■■■□□ 2.89
TRIM28-204ENST00000594806 DCAF8L1A6NGE4 600 aa33.1■■■□□ 2.89
TRIM28-204ENST00000594806 TRMT2AQ8IZ69 625 aaKnown RBP33.1■■■□□ 2.89
TRIM28-204ENST00000594806 NLGN2Q8NFZ4 835 aa33.09■■■□□ 2.89
TRIM28-204ENST00000594806 TPTE2Q6XPS3 522 aa33.08■■■□□ 2.89
TRIM28-204ENST00000594806 ZNF34Q8IZ26 560 aa33.08■■■□□ 2.89
TRIM28-204ENST00000594806 DDX58O95786 925 aaKnown RBP33.07■■■□□ 2.88
TRIM28-204ENST00000594806 NBPF5PQ86XG9 351 aaPredicted RBP33.07■■■□□ 2.88
TRIM28-204ENST00000594806 CNBD1Q8NA66 436 aa33.07■■■□□ 2.88
TRIM28-204ENST00000594806 CDCA7LQ96GN5 454 aa33.07■■■□□ 2.88
TRIM28-204ENST00000594806 PARP10Q53GL7 1025 aa33.06■■■□□ 2.88
TRIM28-204ENST00000594806 NYXQ9GZU5 481 aa33.06■■■□□ 2.88
TRIM28-204ENST00000594806 PHAXQ9H814 394 aaKnown RBP33.06■■■□□ 2.88
TRIM28-204ENST00000594806 PDZRN3Q9UPQ7 1066 aa33.06■■■□□ 2.88
TRIM28-204ENST00000594806 NPHP1O15259 732 aa33.05■■■□□ 2.88
TRIM28-204ENST00000594806 SLC4A2P04920 1241 aa33.05■■■□□ 2.88
TRIM28-204ENST00000594806 ST5P78524 1137 aa33.05■■■□□ 2.88
TRIM28-204ENST00000594806 TCIRG1Q13488 830 aa33.05■■■□□ 2.88
TRIM28-204ENST00000594806 PRR5LQ6MZQ0 368 aa33.05■■■□□ 2.88
TRIM28-204ENST00000594806 ZNF428Q96B54 188 aa33.05■■■□□ 2.88
TRIM28-204ENST00000594806 ANKRD36CQ5JPF3 1778 aa33.05■■■□□ 2.88
TRIM28-204ENST00000594806 IBTKQ9P2D0 1353 aaPredicted RBP33.05■■■□□ 2.88
TRIM28-204ENST00000594806 BRIP1Q9BX63 1249 aa33.03■■■□□ 2.88
TRIM28-204ENST00000594806 PXDNLA1KZ92 1463 aa33.02■■■□□ 2.88
TRIM28-204ENST00000594806 CT47B1P0C2W7 299 aaPredicted RBP33.02■■■□□ 2.88
TRIM28-204ENST00000594806 PPP1R42Q7Z4L9 355 aa33.02■■■□□ 2.88
TRIM28-204ENST00000594806 RIC3Q7Z5B4 369 aa33.02■■■□□ 2.88
TRIM28-204ENST00000594806 KIAA1551Q9HCM1 1747 aa33.01■■■□□ 2.87
TRIM28-204ENST00000594806 GPTP24298 496 aa33■■■□□ 2.87
TRIM28-204ENST00000594806 PDE6BP35913 854 aa33■■■□□ 2.87
TRIM28-204ENST00000594806 ZBED9Q6R2W3 1325 aa33■■■□□ 2.87
TRIM28-204ENST00000594806 UBN2Q6ZU65 1347 aa33■■■□□ 2.87
TRIM28-204ENST00000594806 ARFGEF2Q9Y6D5 1785 aa32.99■■■□□ 2.87
TRIM28-204ENST00000594806 TCERG1O14776 1098 aaKnown RBP32.99■■■□□ 2.87
TRIM28-204ENST00000594806 RNF123Q5XPI4 1314 aa32.99■■■□□ 2.87
TRIM28-204ENST00000594806 N4BP2Q86UW6 1770 aaPredicted RBP32.98■■■□□ 2.87
TRIM28-204ENST00000594806 GTF2E1P29083 439 aaPredicted RBP32.98■■■□□ 2.87
TRIM28-204ENST00000594806 KSR2Q6VAB6 950 aa32.98■■■□□ 2.87
TRIM28-204ENST00000594806 A0A0G2JLW4 131 aa32.97■■■□□ 2.87
TRIM28-204ENST00000594806 DPEP1P16444 411 aa32.97■■■□□ 2.87
TRIM28-204ENST00000594806 TRIM28Q13263 835 aaKnown RBP32.97■■■□□ 2.87
TRIM28-204ENST00000594806 FLIIQ13045 1269 aa32.96■■■□□ 2.87
TRIM28-204ENST00000594806 SUSD4Q5VX71 490 aa32.96■■■□□ 2.87
TRIM28-204ENST00000594806 ISCA1Q9BUE6 129 aa32.96■■■□□ 2.87
TRIM28-204ENST00000594806 ANKRD31Q8N7Z5 1873 aa32.96■■■□□ 2.87
TRIM28-204ENST00000594806 GPR162Q16538 588 aa32.95■■■□□ 2.87
TRIM28-204ENST00000594806 NLRP10Q86W26 655 aa32.95■■■□□ 2.87
TRIM28-204ENST00000594806 UTP14AQ9BVJ6 771 aaKnown RBP32.95■■■□□ 2.87
TRIM28-204ENST00000594806 FAM177BA6PVY3 158 aa32.94■■■□□ 2.86
TRIM28-204ENST00000594806 H0YIN7 160 aa32.94■■■□□ 2.86
TRIM28-204ENST00000594806 G2E3Q7L622 706 aa32.94■■■□□ 2.86
TRIM28-204ENST00000594806 METTL22Q9BUU2 404 aaPredicted RBP32.94■■■□□ 2.86
TRIM28-204ENST00000594806 PIM2Q9P1W9 311 aa32.94■■■□□ 2.86
TRIM28-204ENST00000594806 BRCA1P38398 1863 aaKnown RBP32.93■■■□□ 2.86
TRIM28-204ENST00000594806 NTSR2O95665 410 aa32.93■■■□□ 2.86
TRIM28-204ENST00000594806 KCNA3P22001 575 aa32.93■■■□□ 2.86
TRIM28-204ENST00000594806 PI4KAP2A4QPH2 592 aa32.92■■■□□ 2.86
TRIM28-204ENST00000594806 C2CD5Q86YS7 1000 aa32.92■■■□□ 2.86
TRIM28-204ENST00000594806 PI4KAP1Q8N8J0 262 aa32.92■■■□□ 2.86
TRIM28-204ENST00000594806 MAP3K2Q9Y2U5 619 aa32.92■■■□□ 2.86
TRIM28-204ENST00000594806 RIC1Q4ADV7 1423 aa32.92■■■□□ 2.86
TRIM28-204ENST00000594806 FKBP5Q13451 457 aaPredicted RBP32.91■■■□□ 2.86
TRIM28-204ENST00000594806 ALDH1L2Q3SY69 923 aa32.91■■■□□ 2.86
TRIM28-204ENST00000594806 DLEC1Q9Y238 1755 aa32.91■■■□□ 2.86
Retrieved 100 of 20,778 RNA–protein pairs in 119.1 ms