RNA–Protein interactions for RNA: ENST00000590588.5

ZNF540-209, Transcript of zinc finger protein 540, humanhuman

TSL 3

Gene ZNF540, Length 563 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-209ENST00000590588 SETDB2Q96T68 719 aa15.07■□□□□ 0
ZNF540-209ENST00000590588 DDX21Q9NR30 783 aaKnown RBP eCLIP15.07■□□□□ 0
ZNF540-209ENST00000590588 RNMTO43148 476 aaKnown RBP15.06■□□□□ 0
ZNF540-209ENST00000590588 ST5P78524 1137 aa15.06■□□□□ 0
ZNF540-209ENST00000590588 FKBP4Q02790 459 aaKnown RBP eCLIP15.06■□□□□ 0
ZNF540-209ENST00000590588 CCDC93Q567U6 631 aa15.06■□□□□ 0
ZNF540-209ENST00000590588 PAXIP1Q6ZW49 1069 aaPredicted RBP15.06■□□□□ 0
ZNF540-209ENST00000590588 CNBD1Q8NA66 436 aa15.06■□□□□ 0
ZNF540-209ENST00000590588 C7orf43Q8WVR3 580 aa15.05■□□□□ -0
ZNF540-209ENST00000590588 TBC1D2BQ9UPU7 963 aa15.05■□□□□ -0
ZNF540-209ENST00000590588 ZNF541Q9H0D2 1346 aa15.05■□□□□ -0
ZNF540-209ENST00000590588 ANKRD31Q8N7Z5 1873 aa15.04■□□□□ -0
ZNF540-209ENST00000590588 RNF123Q5XPI4 1314 aa15.04■□□□□ -0
ZNF540-209ENST00000590588 MAP2K2P36507 400 aa15.04■□□□□ -0
ZNF540-209ENST00000590588 TRIM26Q12899 539 aaPredicted RBP15.04■□□□□ -0
ZNF540-209ENST00000590588 CYP4F22Q6NT55 531 aa15.04■□□□□ -0
ZNF540-209ENST00000590588 NPM2Q86SE8 214 aaKnown RBP15.04■□□□□ -0
ZNF540-209ENST00000590588 MCOLN1Q9GZU1 580 aa15.04■□□□□ -0
ZNF540-209ENST00000590588 ZNF277Q9NRM2 450 aaPredicted RBP15.04■□□□□ -0
ZNF540-209ENST00000590588 SLX4Q8IY92 1834 aa15.03■□□□□ -0
ZNF540-209ENST00000590588 SCN11AQ9UI33 1791 aa15.03■□□□□ -0
ZNF540-209ENST00000590588 FZD9O00144 591 aa15.03■□□□□ -0
ZNF540-209ENST00000590588 CA12O43570 354 aa15.03■□□□□ -0
ZNF540-209ENST00000590588 GRM1Q13255 1194 aa15.03■□□□□ -0
ZNF540-209ENST00000590588 RTKN2Q8IZC4 609 aa15.03■□□□□ -0
ZNF540-209ENST00000590588 GPC2Q8N158 579 aa15.03■□□□□ -0
ZNF540-209ENST00000590588 TEX13AQ9BXU3 409 aaPredicted RBP15.03■□□□□ -0
ZNF540-209ENST00000590588 TSKSQ9UJT2 592 aa15.03■□□□□ -0
ZNF540-209ENST00000590588 TTC5Q8N0Z6 440 aa15.02■□□□□ -0
ZNF540-209ENST00000590588 ZNF330Q9Y3S2 320 aaPredicted RBP15.02■□□□□ -0
ZNF540-209ENST00000590588 ADAMTSL1Q8N6G6 1762 aa15.02□□□□□ -0.01
ZNF540-209ENST00000590588 NPR1P16066 1061 aa15.01□□□□□ -0.01
ZNF540-209ENST00000590588 IL6STP40189 918 aaPredicted RBP15.01□□□□□ -0.01
ZNF540-209ENST00000590588 IARSP41252 1262 aaKnown RBP15.01□□□□□ -0.01
ZNF540-209ENST00000590588 COL11A2P13942 1736 aaPredicted RBP15□□□□□ -0.01
ZNF540-209ENST00000590588 IL13P35225 146 aa15□□□□□ -0.01
ZNF540-209ENST00000590588 SYNE4Q8N205 404 aa15□□□□□ -0.01
ZNF540-209ENST00000590588 JDP2Q8WYK2 163 aa15□□□□□ -0.01
ZNF540-209ENST00000590588 TLL2Q9Y6L7 1015 aa15□□□□□ -0.01
ZNF540-209ENST00000590588 LMOD1P29536 600 aaPredicted RBP14.99□□□□□ -0.01
ZNF540-209ENST00000590588 DGKZQ13574 1117 aa14.99□□□□□ -0.01
ZNF540-209ENST00000590588 CST9Q5W186 159 aa14.99□□□□□ -0.01
ZNF540-209ENST00000590588 MRC1P22897 1456 aa14.98□□□□□ -0.01
ZNF540-209ENST00000590588 AOC2O75106 756 aa14.98□□□□□ -0.01
ZNF540-209ENST00000590588 CAMTA2O94983 1202 aa14.98□□□□□ -0.01
ZNF540-209ENST00000590588 ALDH1B1P30837 517 aa14.98□□□□□ -0.01
ZNF540-209ENST00000590588 EIF6P56537 245 aaKnown RBP14.98□□□□□ -0.01
ZNF540-209ENST00000590588 FMR1Q06787 632 aaKnown RBP eCLIP14.98□□□□□ -0.01
ZNF540-209ENST00000590588 THSD7BQ9C0I4 1608 aa14.97□□□□□ -0.01
ZNF540-209ENST00000590588 KLRG2A4D1S0 409 aaPredicted RBP14.97□□□□□ -0.01
ZNF540-209ENST00000590588 USP50Q70EL3 339 aaPredicted RBP14.97□□□□□ -0.01
ZNF540-209ENST00000590588 MORC1Q86VD1 984 aa14.97□□□□□ -0.01
ZNF540-209ENST00000590588 NBPF5PQ86XG9 351 aaPredicted RBP14.97□□□□□ -0.01
ZNF540-209ENST00000590588 POLR3GLQ9BT43 218 aa14.97□□□□□ -0.01
ZNF540-209ENST00000590588 GJA3Q9Y6H8 435 aa14.97□□□□□ -0.01
ZNF540-209ENST00000590588 TNRC18O15417 2968 aaPredicted RBP14.96□□□□□ -0.01
ZNF540-209ENST00000590588 BRPF1P55201 1214 aaPredicted RBP14.96□□□□□ -0.01
ZNF540-209ENST00000590588 OLFM4Q6UX06 510 aa14.96□□□□□ -0.01
ZNF540-209ENST00000590588 CLEC4GQ6UXB4 293 aa14.96□□□□□ -0.01
ZNF540-209ENST00000590588 TPTE2Q6XPS3 522 aa14.96□□□□□ -0.01
ZNF540-209ENST00000590588 ZNF496Q96IT1 587 aaPredicted RBP14.96□□□□□ -0.01
ZNF540-209ENST00000590588 HEG1Q9ULI3 1381 aa14.96□□□□□ -0.02
ZNF540-209ENST00000590588 ARFGEF2Q9Y6D5 1785 aa14.96□□□□□ -0.02
ZNF540-209ENST00000590588 A1BGP04217 495 aa14.95□□□□□ -0.02
ZNF540-209ENST00000590588 EPS15P42566 896 aa14.95□□□□□ -0.02
ZNF540-209ENST00000590588 MTHFSDQ2M296 383 aaKnown RBP14.95□□□□□ -0.02
ZNF540-209ENST00000590588 ZNF790Q6PG37 636 aa14.95□□□□□ -0.02
ZNF540-209ENST00000590588 SAPCD2Q86UD0 394 aa14.95□□□□□ -0.02
ZNF540-209ENST00000590588 DZIP3Q86Y13 1208 aaKnown RBP14.95□□□□□ -0.02
ZNF540-209ENST00000590588 HHIPL1Q96JK4 782 aa14.95□□□□□ -0.02
ZNF540-209ENST00000590588 PSMD1Q99460 953 aa14.95□□□□□ -0.02
ZNF540-209ENST00000590588 CACNA1SQ13698 1873 aa14.95□□□□□ -0.02
ZNF540-209ENST00000590588 TRAF5O00463 557 aa14.94□□□□□ -0.02
ZNF540-209ENST00000590588 PANK3Q9H999 370 aa14.94□□□□□ -0.02
ZNF540-209ENST00000590588 HMOX1P09601 288 aa14.93□□□□□ -0.02
ZNF540-209ENST00000590588 SCNN1DP51172 638 aa14.93□□□□□ -0.02
ZNF540-209ENST00000590588 ZNF652Q9Y2D9 606 aa14.93□□□□□ -0.02
ZNF540-209ENST00000590588 SCN7AQ01118 1682 aa14.93□□□□□ -0.02
ZNF540-209ENST00000590588 CELF2O95319 508 aaKnown RBP14.92□□□□□ -0.02
ZNF540-209ENST00000590588 TEFQ10587 303 aa14.92□□□□□ -0.02
ZNF540-209ENST00000590588 PRPF38BQ5VTL8 546 aaKnown RBP14.92□□□□□ -0.02
ZNF540-209ENST00000590588 CC2D2BQ6DHV5 1058 aa14.92□□□□□ -0.02
ZNF540-209ENST00000590588 FMNL2Q96PY5 1086 aa14.92□□□□□ -0.02
ZNF540-209ENST00000590588 PDE4DIPQ5VU43 2346 aa14.92□□□□□ -0.02
ZNF540-209ENST00000590588 CASP8AP2Q9UKL3 1982 aa14.91□□□□□ -0.02
ZNF540-209ENST00000590588 GRIPAP1Q4V328 841 aa14.91□□□□□ -0.02
ZNF540-209ENST00000590588 CIAPIN1Q6FI81 312 aa14.91□□□□□ -0.02
ZNF540-209ENST00000590588 UBR2Q8IWV8 1755 aa14.9□□□□□ -0.02
ZNF540-209ENST00000590588 LTBP1Q14766 1721 aa14.9□□□□□ -0.02
ZNF540-209ENST00000590588 ADARB2Q9NS39 739 aaKnown RBP14.9□□□□□ -0.02
ZNF540-209ENST00000590588 GTF2E1P29083 439 aaPredicted RBP14.89□□□□□ -0.03
ZNF540-209ENST00000590588 LARGE2Q8N3Y3 721 aa14.89□□□□□ -0.03
ZNF540-209ENST00000590588 NIP7Q9Y221 180 aaKnown RBP eCLIP14.89□□□□□ -0.03
ZNF540-209ENST00000590588 TRPM7Q96QT4 1865 aa14.89□□□□□ -0.03
ZNF540-209ENST00000590588 RGL2O15211 777 aa14.88□□□□□ -0.03
ZNF540-209ENST00000590588 SOX10P56693 466 aa14.88□□□□□ -0.03
ZNF540-209ENST00000590588 NOGQ13253 232 aa14.88□□□□□ -0.03
ZNF540-209ENST00000590588 IL17REQ8NFR9 667 aa14.88□□□□□ -0.03
ZNF540-209ENST00000590588 FAM177BA6PVY3 158 aa14.87□□□□□ -0.03
ZNF540-209ENST00000590588 GNAT3A8MTJ3 354 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms