RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 U2AF1L5P0DN76 240 aaPredicted RBP15.7■□□□□ 0.1
CLIP3-204ENST00000590559 SRGNP10124 158 aa15.7■□□□□ 0.1
CLIP3-204ENST00000590559 VEGFAP15692 232 aaPredicted RBP15.7■□□□□ 0.1
CLIP3-204ENST00000590559 HTRA3P83110 453 aa15.7■□□□□ 0.1
CLIP3-204ENST00000590559 U2AF1Q01081 240 aaKnown RBP eCLIP15.7■□□□□ 0.1
CLIP3-204ENST00000590559 SMC1BQ8NDV3 1235 aa15.7■□□□□ 0.1
CLIP3-204ENST00000590559 KLRG1Q96E93 195 aa15.7■□□□□ 0.1
CLIP3-204ENST00000590559 ZNF330Q9Y3S2 320 aaPredicted RBP15.7■□□□□ 0.1
CLIP3-204ENST00000590559 NUP98P52948 1817 aa15.69■□□□□ 0.1
CLIP3-204ENST00000590559 KLRG2A4D1S0 409 aaPredicted RBP15.69■□□□□ 0.1
CLIP3-204ENST00000590559 NBPF26B4DH59 902 aa15.69■□□□□ 0.1
CLIP3-204ENST00000590559 C21orf2O43822 256 aa15.69■□□□□ 0.1
CLIP3-204ENST00000590559 PIP4K2AP48426 406 aaPredicted RBP15.69■□□□□ 0.1
CLIP3-204ENST00000590559 DCTN1Q14203 1278 aa15.69■□□□□ 0.1
CLIP3-204ENST00000590559 STYK1Q6J9G0 422 aa15.69■□□□□ 0.1
CLIP3-204ENST00000590559 NBPF10Q6P3W6 841 aaKnown RBP15.69■□□□□ 0.1
CLIP3-204ENST00000590559 NBPF15Q8N660 670 aa15.69■□□□□ 0.1
CLIP3-204ENST00000590559 CNBD1Q8NA66 436 aa15.69■□□□□ 0.1
CLIP3-204ENST00000590559 ZNF622Q969S3 477 aaKnown RBP eCLIP15.69■□□□□ 0.1
CLIP3-204ENST00000590559 C7orf43Q8WVR3 580 aa15.68■□□□□ 0.1
CLIP3-204ENST00000590559 RTF1Q92541 710 aaKnown RBP15.67■□□□□ 0.1
CLIP3-204ENST00000590559 ST5P78524 1137 aa15.66■□□□□ 0.1
CLIP3-204ENST00000590559 TAF7Q15545 349 aaPredicted RBP15.66■□□□□ 0.1
CLIP3-204ENST00000590559 PRPF40BQ6NWY9 871 aaKnown RBP15.66■□□□□ 0.1
CLIP3-204ENST00000590559 CNKSR1Q969H4 720 aa15.66■□□□□ 0.1
CLIP3-204ENST00000590559 MASTLQ96GX5 879 aa15.66■□□□□ 0.1
CLIP3-204ENST00000590559 PLEKHF1Q96S99 279 aa15.66■□□□□ 0.1
CLIP3-204ENST00000590559 NPM2Q86SE8 214 aaKnown RBP15.65■□□□□ 0.1
CLIP3-204ENST00000590559 SCN4AP35499 1836 aa15.65■□□□□ 0.1
CLIP3-204ENST00000590559 ERFEQ4G0M1 354 aa15.64■□□□□ 0.09
CLIP3-204ENST00000590559 DPY19L2Q6NUT2 758 aa15.64■□□□□ 0.09
CLIP3-204ENST00000590559 TAOK3Q9H2K8 898 aa15.64■□□□□ 0.09
CLIP3-204ENST00000590559 ZNF219Q9P2Y4 722 aaPredicted RBP15.64■□□□□ 0.09
CLIP3-204ENST00000590559 ZNF652Q9Y2D9 606 aa15.64■□□□□ 0.09
CLIP3-204ENST00000590559 SNED1Q8TER0 1413 aa15.63■□□□□ 0.09
CLIP3-204ENST00000590559 HLFQ16534 295 aa15.63■□□□□ 0.09
CLIP3-204ENST00000590559 SOGA3Q5TF21 947 aa15.63■□□□□ 0.09
CLIP3-204ENST00000590559 NBPF5PQ86XG9 351 aaPredicted RBP15.63■□□□□ 0.09
CLIP3-204ENST00000590559 MIS18AQ9NYP9 233 aa15.63■□□□□ 0.09
CLIP3-204ENST00000590559 NPR1P16066 1061 aa15.62■□□□□ 0.09
CLIP3-204ENST00000590559 TPTE2Q6XPS3 522 aa15.61■□□□□ 0.09
CLIP3-204ENST00000590559 NIP7Q9Y221 180 aaKnown RBP eCLIP15.61■□□□□ 0.09
CLIP3-204ENST00000590559 ADAMTSL1Q8N6G6 1762 aa15.61■□□□□ 0.09
CLIP3-204ENST00000590559 DDNO94850 711 aaPredicted RBP15.6■□□□□ 0.09
CLIP3-204ENST00000590559 EIF4A1P60842 406 aaKnown RBP15.6■□□□□ 0.09
CLIP3-204ENST00000590559 RIC1Q4ADV7 1423 aa15.6■□□□□ 0.09
CLIP3-204ENST00000590559 ERVV-1B6SEH8 477 aa15.59■□□□□ 0.09
CLIP3-204ENST00000590559 NPHP1O15259 732 aa15.59■□□□□ 0.09
CLIP3-204ENST00000590559 NFE2L2Q16236 605 aa15.59■□□□□ 0.09
CLIP3-204ENST00000590559 CRY2Q49AN0 593 aa15.59■□□□□ 0.09
CLIP3-204ENST00000590559 CCDC93Q567U6 631 aa15.59■□□□□ 0.09
CLIP3-204ENST00000590559 PNISRQ8TF01 805 aaKnown RBP15.59■□□□□ 0.09
CLIP3-204ENST00000590559 L3MBTL3Q96JM7 780 aaPredicted RBP15.59■□□□□ 0.09
CLIP3-204ENST00000590559 POTEIP0CG38 1075 aa15.58■□□□□ 0.08
CLIP3-204ENST00000590559 POTEJP0CG39 1038 aa15.58■□□□□ 0.08
CLIP3-204ENST00000590559 FKBP4Q02790 459 aaKnown RBP eCLIP15.58■□□□□ 0.08
CLIP3-204ENST00000590559 OLFM4Q6UX06 510 aa15.58■□□□□ 0.08
CLIP3-204ENST00000590559 TTLL7Q6ZT98 887 aa15.57■□□□□ 0.08
CLIP3-204ENST00000590559 MAP3K15Q6ZN16 1313 aa15.57■□□□□ 0.08
CLIP3-204ENST00000590559 ABCC12Q96J65 1359 aa15.57■□□□□ 0.08
CLIP3-204ENST00000590559 IBTKQ9P2D0 1353 aaPredicted RBP15.57■□□□□ 0.08
CLIP3-204ENST00000590559 ALDH1B1P30837 517 aa15.56■□□□□ 0.08
CLIP3-204ENST00000590559 COL13A1Q5TAT6 717 aaPredicted RBP15.56■□□□□ 0.08
CLIP3-204ENST00000590559 CHADLQ6NUI6 762 aa15.56■□□□□ 0.08
CLIP3-204ENST00000590559 LRP10Q7Z4F1 713 aa15.56■□□□□ 0.08
CLIP3-204ENST00000590559 THUMPD2Q9BTF0 503 aaKnown RBP15.56■□□□□ 0.08
CLIP3-204ENST00000590559 UBN2Q6ZU65 1347 aa15.56■□□□□ 0.08
CLIP3-204ENST00000590559 ANKRD36CQ5JPF3 1778 aa15.55■□□□□ 0.08
CLIP3-204ENST00000590559 COL4A5P29400 1685 aa15.55■□□□□ 0.08
CLIP3-204ENST00000590559 PASKQ96RG2 1323 aa15.55■□□□□ 0.08
CLIP3-204ENST00000590559 RTKN2Q8IZC4 609 aa15.55■□□□□ 0.08
CLIP3-204ENST00000590559 ERBB4Q15303 1308 aa15.54■□□□□ 0.08
CLIP3-204ENST00000590559 ZNF541Q9H0D2 1346 aa15.54■□□□□ 0.08
CLIP3-204ENST00000590559 FAM177BA6PVY3 158 aa15.54■□□□□ 0.08
CLIP3-204ENST00000590559 FZD9O00144 591 aa15.54■□□□□ 0.08
CLIP3-204ENST00000590559 HOXA10P31260 410 aaPredicted RBP15.54■□□□□ 0.08
CLIP3-204ENST00000590559 ZNF34Q8IZ26 560 aa15.54■□□□□ 0.08
CLIP3-204ENST00000590559 PSMD1Q99460 953 aa15.54■□□□□ 0.08
CLIP3-204ENST00000590559 NYXQ9GZU5 481 aa15.54■□□□□ 0.08
CLIP3-204ENST00000590559 TAF1DQ9H5J8 278 aaPredicted RBP15.54■□□□□ 0.08
CLIP3-204ENST00000590559 ZNF277Q9NRM2 450 aaPredicted RBP15.54■□□□□ 0.08
CLIP3-204ENST00000590559 LAMB2P55268 1798 aa15.54■□□□□ 0.08
CLIP3-204ENST00000590559 IQCA1LA6NCM1 817 aa15.53■□□□□ 0.08
CLIP3-204ENST00000590559 NEFMP07197 916 aa15.53■□□□□ 0.08
CLIP3-204ENST00000590559 PDIA6Q15084 440 aa15.53■□□□□ 0.08
CLIP3-204ENST00000590559 NUTM1Q86Y26 1132 aa15.53■□□□□ 0.08
CLIP3-204ENST00000590559 CREBZFQ9NS37 354 aa15.53■□□□□ 0.08
CLIP3-204ENST00000590559 RRP7AQ9Y3A4 280 aaKnown RBP15.53■□□□□ 0.08
CLIP3-204ENST00000590559 LTBP1Q14766 1721 aa15.53■□□□□ 0.08
CLIP3-204ENST00000590559 NTSR2O95665 410 aa15.52■□□□□ 0.08
CLIP3-204ENST00000590559 IARSP41252 1262 aaKnown RBP15.52■□□□□ 0.08
CLIP3-204ENST00000590559 SUSD4Q5VX71 490 aa15.52■□□□□ 0.08
CLIP3-204ENST00000590559 GIGYF2Q6Y7W6 1299 aaKnown RBP15.52■□□□□ 0.08
CLIP3-204ENST00000590559 LDHDQ86WU2 507 aa15.52■□□□□ 0.08
CLIP3-204ENST00000590559 PNNQ9H307 717 aaKnown RBP15.52■□□□□ 0.08
CLIP3-204ENST00000590559 ITGBL1O95965 494 aaPredicted RBP15.51■□□□□ 0.07
CLIP3-204ENST00000590559 MYL6BP14649 208 aa15.51■□□□□ 0.07
CLIP3-204ENST00000590559 KIF6Q6ZMV9 814 aa15.51■□□□□ 0.07
CLIP3-204ENST00000590559 SYNE4Q8N205 404 aa15.51■□□□□ 0.07
CLIP3-204ENST00000590559 NGEFQ8N5V2 710 aa15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms