RNA–Protein interactions for RNA: ENST00000588555.1

SCAMP4-210, Transcript of secretory carrier membrane protein 4, human

Gene SCAMP4, Length 1,785 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCAMP4-210	ENST00000588555	IGKV5-2	P06315	115 aa		32.69	■■■□□ 2.82
SCAMP4-210	ENST00000588555	CWF19L2	Q2TBE0	894 aa	Known RBP	32.69	■■■□□ 2.82
SCAMP4-210	ENST00000588555	ZBTB1	Q9Y2K1	713 aa		32.69	■■■□□ 2.82
SCAMP4-210	ENST00000588555	GNAI2	P04899	355 aa		32.68	■■■□□ 2.82
SCAMP4-210	ENST00000588555	CEP85	Q6P2H3	762 aa		32.68	■■■□□ 2.82
SCAMP4-210	ENST00000588555	ANKRD44	Q8N8A2	993 aa		32.68	■■■□□ 2.82
SCAMP4-210	ENST00000588555	RPAP2	Q8IXW5	612 aa	Predicted RBP	32.67	■■■□□ 2.82
SCAMP4-210	ENST00000588555	NEXN	Q0ZGT2	675 aa		32.65	■■■□□ 2.82
SCAMP4-210	ENST00000588555	FAM196A	Q6ZSG2	479 aa		32.65	■■■□□ 2.82
SCAMP4-210	ENST00000588555	MYD88	Q99836	296 aa		32.65	■■■□□ 2.82
SCAMP4-210	ENST00000588555	LY75	O60449	1722 aa		32.65	■■■□□ 2.82
SCAMP4-210	ENST00000588555	NBPF7	P0C2Y1	421 aa	Predicted RBP	32.65	■■■□□ 2.82
SCAMP4-210	ENST00000588555	UBTFL1	P0CB47	393 aa	Predicted RBP	32.65	■■■□□ 2.82
SCAMP4-210	ENST00000588555	INTS5	Q6P9B9	1019 aa	Known RBP	32.65	■■■□□ 2.82
SCAMP4-210	ENST00000588555	SMC5	Q8IY18	1101 aa		32.65	■■■□□ 2.82
SCAMP4-210	ENST00000588555	MYH14	Q7Z406	1995 aa	Known RBP	32.65	■■■□□ 2.82
SCAMP4-210	ENST00000588555	NEURL1B	A8MQ27	555 aa		32.64	■■■□□ 2.82
SCAMP4-210	ENST00000588555	RXRB	P28702	533 aa		32.64	■■■□□ 2.82
SCAMP4-210	ENST00000588555	BCL11B	Q9C0K0	894 aa	Predicted RBP	32.64	■■■□□ 2.82
SCAMP4-210	ENST00000588555	IL6ST	P40189	918 aa	Predicted RBP	32.63	■■■□□ 2.81
SCAMP4-210	ENST00000588555	CRKL	P46109	303 aa	Known RBP	32.63	■■■□□ 2.81
SCAMP4-210	ENST00000588555	SKAP1	Q86WV1	359 aa		32.63	■■■□□ 2.81
SCAMP4-210	ENST00000588555	CCDC87	Q9NVE4	849 aa		32.63	■■■□□ 2.81
SCAMP4-210	ENST00000588555	LRRFIP2	Q9Y608	721 aa	Known RBP	32.62	■■■□□ 2.81
SCAMP4-210	ENST00000588555	UTY	O14607	1347 aa		32.62	■■■□□ 2.81
SCAMP4-210	ENST00000588555	AFDN	P55196	1824 aa	Known RBP	32.61	■■■□□ 2.81
SCAMP4-210	ENST00000588555	ZBTB3	Q9H5J0	574 aa		32.61	■■■□□ 2.81
SCAMP4-210	ENST00000588555	ZNF330	Q9Y3S2	320 aa	Predicted RBP	32.61	■■■□□ 2.81
SCAMP4-210	ENST00000588555	GRM8	O00222	908 aa		32.59	■■■□□ 2.81
SCAMP4-210	ENST00000588555	EIF5	P55010	431 aa	Known RBP	32.59	■■■□□ 2.81
SCAMP4-210	ENST00000588555	GCKR	Q14397	625 aa		32.59	■■■□□ 2.81
SCAMP4-210	ENST00000588555	LINC00116	Q8NCU8	138 aa		32.59	■■■□□ 2.81
SCAMP4-210	ENST00000588555	C9orf78	Q9NZ63	289 aa	Predicted RBP	32.59	■■■□□ 2.81
SCAMP4-210	ENST00000588555	POTEA	Q6S8J7	498 aa		32.58	■■■□□ 2.81
SCAMP4-210	ENST00000588555	KIF6	Q6ZMV9	814 aa		32.58	■■■□□ 2.81
SCAMP4-210	ENST00000588555	MAP3K15	Q6ZN16	1313 aa		32.57	■■■□□ 2.8
SCAMP4-210	ENST00000588555	ATP5J2-PTCD1	G3V325	749 aa		32.56	■■■□□ 2.8
SCAMP4-210	ENST00000588555	GCC1	Q96CN9	775 aa		32.56	■■■□□ 2.8
SCAMP4-210	ENST00000588555	PDZRN3	Q9UPQ7	1066 aa		32.56	■■■□□ 2.8
SCAMP4-210	ENST00000588555	KCNQ4	P56696	695 aa		32.55	■■■□□ 2.8
SCAMP4-210	ENST00000588555	ATP8B2	P98198	1209 aa		32.54	■■■□□ 2.8
SCAMP4-210	ENST00000588555	DCTPP1	Q9H773	170 aa		32.54	■■■□□ 2.8
SCAMP4-210	ENST00000588555	TAF1L	Q8IZX4	1826 aa		32.54	■■■□□ 2.8
SCAMP4-210	ENST00000588555	CNTNAP4	Q9C0A0	1308 aa		32.54	■■■□□ 2.8
SCAMP4-210	ENST00000588555	CCNL1	Q9UK58	526 aa	Predicted RBP	32.53	■■■□□ 2.8
SCAMP4-210	ENST00000588555	PNMA6E	A0A0J9YXQ4	647 aa		32.52	■■■□□ 2.8
SCAMP4-210	ENST00000588555	HMMR	O75330	724 aa		32.52	■■■□□ 2.8
SCAMP4-210	ENST00000588555	TCIRG1	Q13488	830 aa		32.52	■■■□□ 2.8
SCAMP4-210	ENST00000588555	GIGYF2	Q6Y7W6	1299 aa	Known RBP	32.52	■■■□□ 2.8
SCAMP4-210	ENST00000588555	ISCA1	Q9BUE6	129 aa		32.52	■■■□□ 2.8
SCAMP4-210	ENST00000588555	TRIM37	O94972	964 aa		32.51	■■■□□ 2.79
SCAMP4-210	ENST00000588555	DZIP3	Q86Y13	1208 aa	Known RBP	32.5	■■■□□ 2.79
SCAMP4-210	ENST00000588555	KAZALD1	Q96I82	304 aa		32.5	■■■□□ 2.79
SCAMP4-210	ENST00000588555	ERVV-1	B6SEH8	477 aa		32.5	■■■□□ 2.79
SCAMP4-210	ENST00000588555	HLF	Q16534	295 aa		32.5	■■■□□ 2.79
SCAMP4-210	ENST00000588555	HDAC5	Q9UQL6	1122 aa		32.5	■■■□□ 2.79
SCAMP4-210	ENST00000588555	ANKRD36C	Q5JPF3	1778 aa		32.5	■■■□□ 2.79
SCAMP4-210	ENST00000588555	NUCB1	Q02818	461 aa		32.49	■■■□□ 2.79
SCAMP4-210	ENST00000588555	TRIM28	Q13263	835 aa	Known RBP	32.49	■■■□□ 2.79
SCAMP4-210	ENST00000588555	RC3H1	Q5TC82	1133 aa	Known RBP	32.49	■■■□□ 2.79
SCAMP4-210	ENST00000588555	CCDC191	Q8NCU4	936 aa		32.49	■■■□□ 2.79
SCAMP4-210	ENST00000588555	SUCLG2	Q96I99	432 aa		32.49	■■■□□ 2.79
SCAMP4-210	ENST00000588555	NUP98	P52948	1817 aa		32.49	■■■□□ 2.79
SCAMP4-210	ENST00000588555	MTX1	Q13505	466 aa		32.48	■■■□□ 2.79
SCAMP4-210	ENST00000588555	NPM2	Q86SE8	214 aa	Known RBP	32.48	■■■□□ 2.79
SCAMP4-210	ENST00000588555	ARX	Q96QS3	562 aa		32.48	■■■□□ 2.79
SCAMP4-210	ENST00000588555	CWC25	Q9NXE8	425 aa	Predicted RBP	32.48	■■■□□ 2.79
SCAMP4-210	ENST00000588555	TBC1D2B	Q9UPU7	963 aa		32.48	■■■□□ 2.79
SCAMP4-210	ENST00000588555	CASP7	P55210	303 aa		32.47	■■■□□ 2.79
SCAMP4-210	ENST00000588555	SSH3	Q8TE77	659 aa		32.47	■■■□□ 2.79
SCAMP4-210	ENST00000588555	COL15A1	P39059	1388 aa		32.47	■■■□□ 2.79
SCAMP4-210	ENST00000588555	PPP1R42	Q7Z4L9	355 aa		32.47	■■■□□ 2.79
SCAMP4-210	ENST00000588555		A0A087WZG4	1122 aa		32.46	■■■□□ 2.79
SCAMP4-210	ENST00000588555	POLA2	Q14181	598 aa		32.46	■■■□□ 2.79
SCAMP4-210	ENST00000588555		H7C1W4	665 aa		32.45	■■■□□ 2.78
SCAMP4-210	ENST00000588555	RGS3	P49796	1198 aa		32.45	■■■□□ 2.78
SCAMP4-210	ENST00000588555	C4B	P0C0L5	1744 aa		32.44	■■■□□ 2.78
SCAMP4-210	ENST00000588555	HSP90AB3P	Q58FF7	597 aa		32.44	■■■□□ 2.78
SCAMP4-210	ENST00000588555	UBE3B	Q7Z3V4	1068 aa		32.44	■■■□□ 2.78
SCAMP4-210	ENST00000588555	CHD1L	Q86WJ1	897 aa		32.43	■■■□□ 2.78
SCAMP4-210	ENST00000588555	BICC1	Q9H694	974 aa	Known RBP	32.43	■■■□□ 2.78
SCAMP4-210	ENST00000588555	LRRC4B	Q9NT99	713 aa		32.43	■■■□□ 2.78
SCAMP4-210	ENST00000588555	BCOR	Q6W2J9	1755 aa		32.43	■■■□□ 2.78
SCAMP4-210	ENST00000588555	CAMTA2	O94983	1202 aa		32.42	■■■□□ 2.78
SCAMP4-210	ENST00000588555	SRGAP3	O43295	1099 aa		32.42	■■■□□ 2.78
SCAMP4-210	ENST00000588555	ANKRD45	Q5TZF3	282 aa		32.42	■■■□□ 2.78
SCAMP4-210	ENST00000588555	JARID2	Q92833	1246 aa	Predicted RBP	32.42	■■■□□ 2.78
SCAMP4-210	ENST00000588555	PDE4A	P27815	886 aa		32.41	■■■□□ 2.78
SCAMP4-210	ENST00000588555	EPHA10	Q5JZY3	1008 aa		32.4	■■■□□ 2.78
SCAMP4-210	ENST00000588555	RPS6KA4	O75676	772 aa		32.4	■■■□□ 2.78
SCAMP4-210	ENST00000588555	LNPK	Q9C0E8	428 aa		32.39	■■■□□ 2.78
SCAMP4-210	ENST00000588555	SLC27A3	Q5K4L6	730 aa		32.38	■■■□□ 2.77
SCAMP4-210	ENST00000588555	NLRP10	Q86W26	655 aa		32.38	■■■□□ 2.77
SCAMP4-210	ENST00000588555	ZNF34	Q8IZ26	560 aa		32.37	■■■□□ 2.77
SCAMP4-210	ENST00000588555	GPT	P24298	496 aa		32.37	■■■□□ 2.77
SCAMP4-210	ENST00000588555	RABL6	Q3YEC7	729 aa	Predicted RBP	32.37	■■■□□ 2.77
SCAMP4-210	ENST00000588555	EXOC6B	Q9Y2D4	811 aa		32.37	■■■□□ 2.77
SCAMP4-210	ENST00000588555	SCN7A	Q01118	1682 aa		32.36	■■■□□ 2.77
SCAMP4-210	ENST00000588555	GNPAT	O15228	680 aa		32.36	■■■□□ 2.77
SCAMP4-210	ENST00000588555	TNS1	Q9HBL0	1735 aa	Known RBP	32.35	■■■□□ 2.77

Retrieved 100 of 20,778 RNA–protein pairs in 48 ms