RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 MASTLQ96GX5 879 aa14.97□□□□□ -0.01
VPS4B-202ENST00000588059 SETDB2Q96T68 719 aa14.97□□□□□ -0.01
VPS4B-202ENST00000588059 TEX13AQ9BXU3 409 aaPredicted RBP14.97□□□□□ -0.01
VPS4B-202ENST00000588059 CLSPNQ9HAW4 1339 aa14.96□□□□□ -0.01
VPS4B-202ENST00000588059 COL3A1P02461 1466 aaPredicted RBP14.96□□□□□ -0.01
VPS4B-202ENST00000588059 DIAPH1O60610 1272 aaKnown RBP14.96□□□□□ -0.01
VPS4B-202ENST00000588059 CTCFP49711 727 aaPredicted RBP14.96□□□□□ -0.01
VPS4B-202ENST00000588059 VEGFBP49765 207 aa14.96□□□□□ -0.01
VPS4B-202ENST00000588059 ST5P78524 1137 aa14.96□□□□□ -0.01
VPS4B-202ENST00000588059 IL17REQ8NFR9 667 aa14.96□□□□□ -0.01
VPS4B-202ENST00000588059 ZNF541Q9H0D2 1346 aa14.95□□□□□ -0.02
VPS4B-202ENST00000588059 TMEM88BA6NKF7 163 aa14.95□□□□□ -0.02
VPS4B-202ENST00000588059 NPHP1O15259 732 aa14.95□□□□□ -0.02
VPS4B-202ENST00000588059 ITGBL1O95965 494 aaPredicted RBP14.95□□□□□ -0.02
VPS4B-202ENST00000588059 A1BGP04217 495 aa14.95□□□□□ -0.02
VPS4B-202ENST00000588059 TEFQ10587 303 aa14.95□□□□□ -0.02
VPS4B-202ENST00000588059 C7orf43Q8WVR3 580 aa14.95□□□□□ -0.02
VPS4B-202ENST00000588059 CCDC93Q567U6 631 aa14.94□□□□□ -0.02
VPS4B-202ENST00000588059 AIDAQ96BJ3 306 aa14.94□□□□□ -0.02
VPS4B-202ENST00000588059 FMNL2Q96PY5 1086 aa14.94□□□□□ -0.02
VPS4B-202ENST00000588059 GNAT3A8MTJ3 354 aa14.93□□□□□ -0.02
VPS4B-202ENST00000588059 EAPPQ56P03 285 aaPredicted RBP14.93□□□□□ -0.02
VPS4B-202ENST00000588059 DZIP3Q86Y13 1208 aaKnown RBP14.93□□□□□ -0.02
VPS4B-202ENST00000588059 WBP1LQ9NX94 342 aa14.93□□□□□ -0.02
VPS4B-202ENST00000588059 CEMIPQ8WUJ3 1361 aa14.93□□□□□ -0.02
VPS4B-202ENST00000588059 LBX1P52954 281 aa14.92□□□□□ -0.02
VPS4B-202ENST00000588059 FKBP4Q02790 459 aaKnown RBP eCLIP14.92□□□□□ -0.02
VPS4B-202ENST00000588059 NPM2Q86SE8 214 aaKnown RBP14.92□□□□□ -0.02
VPS4B-202ENST00000588059 GAS2L2Q8NHY3 880 aa14.92□□□□□ -0.02
VPS4B-202ENST00000588059 HACL1Q9UJ83 578 aa14.92□□□□□ -0.02
VPS4B-202ENST00000588059 THSD7BQ9C0I4 1608 aa14.92□□□□□ -0.02
VPS4B-202ENST00000588059 KCNQ3O43525 872 aa14.91□□□□□ -0.02
VPS4B-202ENST00000588059 NPR1P16066 1061 aa14.91□□□□□ -0.02
VPS4B-202ENST00000588059 PIP4K2AP48426 406 aaPredicted RBP14.91□□□□□ -0.02
VPS4B-202ENST00000588059 OLFM4Q6UX06 510 aa14.91□□□□□ -0.02
VPS4B-202ENST00000588059 NBPF5PQ86XG9 351 aaPredicted RBP14.91□□□□□ -0.02
VPS4B-202ENST00000588059 ZNF277Q9NRM2 450 aaPredicted RBP14.91□□□□□ -0.02
VPS4B-202ENST00000588059 RASSF10A6NK89 507 aa14.9□□□□□ -0.02
VPS4B-202ENST00000588059 HSPA8P11142 646 aaKnown RBP14.9□□□□□ -0.02
VPS4B-202ENST00000588059 EPHX2P34913 555 aa14.9□□□□□ -0.02
VPS4B-202ENST00000588059 CLEC4GQ6UXB4 293 aa14.9□□□□□ -0.02
VPS4B-202ENST00000588059 CCER1Q8TC90 406 aaPredicted RBP14.9□□□□□ -0.02
VPS4B-202ENST00000588059 KIF7Q2M1P5 1343 aa14.9□□□□□ -0.02
VPS4B-202ENST00000588059 RNF123Q5XPI4 1314 aa14.9□□□□□ -0.02
VPS4B-202ENST00000588059 KLRG2A4D1S0 409 aaPredicted RBP14.89□□□□□ -0.03
VPS4B-202ENST00000588059 SLC34A2O95436 690 aa14.89□□□□□ -0.03
VPS4B-202ENST00000588059 CC2D1BQ5T0F9 858 aaKnown RBP14.89□□□□□ -0.03
VPS4B-202ENST00000588059 CLEC11AQ9Y240 323 aa14.89□□□□□ -0.03
VPS4B-202ENST00000588059 USP16Q9Y5T5 823 aa14.89□□□□□ -0.03
VPS4B-202ENST00000588059 SNED1Q8TER0 1413 aa14.89□□□□□ -0.03
VPS4B-202ENST00000588059 LTBP1Q14766 1721 aa14.89□□□□□ -0.03
VPS4B-202ENST00000588059 BTBD11A6QL63 1104 aa14.88□□□□□ -0.03
VPS4B-202ENST00000588059 U2SURPO15042 1029 aaKnown RBP14.88□□□□□ -0.03
VPS4B-202ENST00000588059 PER1O15534 1290 aaPredicted RBP14.88□□□□□ -0.03
VPS4B-202ENST00000588059 MAP1SQ66K74 1059 aaPredicted RBP14.88□□□□□ -0.03
VPS4B-202ENST00000588059 PNMA8AQ86V59 439 aaPredicted RBP14.88□□□□□ -0.03
VPS4B-202ENST00000588059 ZNF652Q9Y2D9 606 aa14.88□□□□□ -0.03
VPS4B-202ENST00000588059 COL4A5P29400 1685 aa14.87□□□□□ -0.03
VPS4B-202ENST00000588059 PRAMEF22A3QJZ6 481 aa14.87□□□□□ -0.03
VPS4B-202ENST00000588059 FZD9O00144 591 aa14.87□□□□□ -0.03
VPS4B-202ENST00000588059 IARSP41252 1262 aaKnown RBP14.87□□□□□ -0.03
VPS4B-202ENST00000588059 DEFB115Q30KQ5 88 aa14.87□□□□□ -0.03
VPS4B-202ENST00000588059 RTKN2Q8IZC4 609 aa14.87□□□□□ -0.03
VPS4B-202ENST00000588059 CNTROBQ8N137 903 aa14.87□□□□□ -0.03
VPS4B-202ENST00000588059 ABHD8Q96I13 439 aa14.87□□□□□ -0.03
VPS4B-202ENST00000588059 TRPM7Q96QT4 1865 aa14.86□□□□□ -0.03
VPS4B-202ENST00000588059 WDR33Q9C0J8 1336 aaKnown RBP14.86□□□□□ -0.03
VPS4B-202ENST00000588059 LAMB4A4D0S4 1761 aa14.85□□□□□ -0.03
VPS4B-202ENST00000588059 RGL2O15211 777 aa14.85□□□□□ -0.03
VPS4B-202ENST00000588059 MAP2K1Q02750 393 aaPredicted RBP14.85□□□□□ -0.03
VPS4B-202ENST00000588059 FAM161AQ3B820 660 aa14.85□□□□□ -0.03
VPS4B-202ENST00000588059 TPTE2Q6XPS3 522 aa14.85□□□□□ -0.03
VPS4B-202ENST00000588059 GPC2Q8N158 579 aa14.85□□□□□ -0.03
VPS4B-202ENST00000588059 SYNE4Q8N205 404 aa14.85□□□□□ -0.03
VPS4B-202ENST00000588059 PHACTR3Q96KR7 559 aa14.85□□□□□ -0.03
VPS4B-202ENST00000588059 ABT1Q9ULW3 272 aaKnown RBP14.85□□□□□ -0.03
VPS4B-202ENST00000588059 NIP7Q9Y221 180 aaKnown RBP eCLIP14.85□□□□□ -0.03
VPS4B-202ENST00000588059 NBPF26B4DH59 902 aa14.84□□□□□ -0.03
VPS4B-202ENST00000588059 NBPF10Q6P3W6 841 aaKnown RBP14.84□□□□□ -0.03
VPS4B-202ENST00000588059 NBPF15Q8N660 670 aa14.84□□□□□ -0.03
VPS4B-202ENST00000588059 ABCC12Q96J65 1359 aa14.84□□□□□ -0.03
VPS4B-202ENST00000588059 NPC1L1Q9UHC9 1359 aa14.84□□□□□ -0.03
VPS4B-202ENST00000588059 FAM177BA6PVY3 158 aa14.83□□□□□ -0.04
VPS4B-202ENST00000588059 SNRPA1P09661 255 aaKnown RBP14.83□□□□□ -0.04
VPS4B-202ENST00000588059 PRKAR2BP31323 418 aa14.83□□□□□ -0.04
VPS4B-202ENST00000588059 PSMD1Q99460 953 aa14.83□□□□□ -0.04
VPS4B-202ENST00000588059 RSPH6AQ9H0K4 717 aa14.83□□□□□ -0.04
VPS4B-202ENST00000588059 DDX21Q9NR30 783 aaKnown RBP eCLIP14.83□□□□□ -0.04
VPS4B-202ENST00000588059 NUP98P52948 1817 aa14.82□□□□□ -0.04
VPS4B-202ENST00000588059 ALDH1B1P30837 517 aa14.82□□□□□ -0.04
VPS4B-202ENST00000588059 FMR1Q06787 632 aaKnown RBP eCLIP14.81□□□□□ -0.04
VPS4B-202ENST00000588059 HLFQ16534 295 aa14.81□□□□□ -0.04
VPS4B-202ENST00000588059 CRY2Q49AN0 593 aa14.81□□□□□ -0.04
VPS4B-202ENST00000588059 JDP2Q8WYK2 163 aa14.81□□□□□ -0.04
VPS4B-202ENST00000588059 CAPNS2Q96L46 248 aa14.81□□□□□ -0.04
VPS4B-202ENST00000588059 SCNN1DP51172 638 aa14.8□□□□□ -0.04
VPS4B-202ENST00000588059 EIF6P56537 245 aaKnown RBP14.8□□□□□ -0.04
VPS4B-202ENST00000588059 MCM10Q7L590 875 aa14.8□□□□□ -0.04
VPS4B-202ENST00000588059 GJA3Q9Y6H8 435 aa14.8□□□□□ -0.04
VPS4B-202ENST00000588059 LMOD1P29536 600 aaPredicted RBP14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms