RNA–Protein interactions for RNA: ENST00000587945.1

VMP1-206, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-206ENST00000587945 FAM177BA6PVY3 158 aa18.94■□□□□ 0.62
VMP1-206ENST00000587945 HLFQ16534 295 aa18.94■□□□□ 0.62
VMP1-206ENST00000587945 NIP7Q9Y221 180 aaKnown RBP eCLIP18.94■□□□□ 0.62
VMP1-206ENST00000587945 KDM2BQ8NHM5 1336 aa18.94■□□□□ 0.62
VMP1-206ENST00000587945 RRP7AQ9Y3A4 280 aaKnown RBP18.93■□□□□ 0.62
VMP1-206ENST00000587945 SRGNP10124 158 aa18.92■□□□□ 0.62
VMP1-206ENST00000587945 RIPK4P57078 832 aa18.92■□□□□ 0.62
VMP1-206ENST00000587945 C16orf71Q8IYS4 520 aaPredicted RBP18.92■□□□□ 0.62
VMP1-206ENST00000587945 STYK1Q6J9G0 422 aa18.91■□□□□ 0.62
VMP1-206ENST00000587945 PRPF40BQ6NWY9 871 aaKnown RBP18.91■□□□□ 0.62
VMP1-206ENST00000587945 TTLL7Q6ZT98 887 aa18.91■□□□□ 0.62
VMP1-206ENST00000587945 CNKSR1Q969H4 720 aa18.91■□□□□ 0.62
VMP1-206ENST00000587945 TSPYL4Q9UJ04 414 aa18.91■□□□□ 0.62
VMP1-206ENST00000587945 MYL6BP14649 208 aa18.9■□□□□ 0.62
VMP1-206ENST00000587945 RBM46Q8TBY0 533 aaKnown RBP18.9■□□□□ 0.62
VMP1-206ENST00000587945 MASTLQ96GX5 879 aa18.9■□□□□ 0.62
VMP1-206ENST00000587945 ANKRD31Q8N7Z5 1873 aa18.89■□□□□ 0.61
VMP1-206ENST00000587945 TMPOP42166 694 aaKnown RBP18.89■□□□□ 0.61
VMP1-206ENST00000587945 TPTE2Q6XPS3 522 aa18.89■□□□□ 0.61
VMP1-206ENST00000587945 CCDC146Q8IYE0 955 aa18.89■□□□□ 0.61
VMP1-206ENST00000587945 MYBBP1AQ9BQG0 1328 aaKnown RBP18.89■□□□□ 0.61
VMP1-206ENST00000587945 GLTPD2A6NH11 291 aa18.88■□□□□ 0.61
VMP1-206ENST00000587945 RGL2O15211 777 aa18.88■□□□□ 0.61
VMP1-206ENST00000587945 ZC3H4Q9UPT8 1303 aaKnown RBP18.88■□□□□ 0.61
VMP1-206ENST00000587945 DLEC1Q9Y238 1755 aa18.88■□□□□ 0.61
VMP1-206ENST00000587945 APLP1P51693 650 aa18.87■□□□□ 0.61
VMP1-206ENST00000587945 NEUROD2Q15784 382 aa18.87■□□□□ 0.61
VMP1-206ENST00000587945 BCORQ6W2J9 1755 aa18.87■□□□□ 0.61
VMP1-206ENST00000587945 MAP3K15Q6ZN16 1313 aa18.87■□□□□ 0.61
VMP1-206ENST00000587945 COL11A2P13942 1736 aaPredicted RBP18.86■□□□□ 0.61
VMP1-206ENST00000587945 KLRG2A4D1S0 409 aaPredicted RBP18.86■□□□□ 0.61
VMP1-206ENST00000587945 ERVV-1B6SEH8 477 aa18.86■□□□□ 0.61
VMP1-206ENST00000587945 NPR1P16066 1061 aa18.86■□□□□ 0.61
VMP1-206ENST00000587945 EIF2S2P20042 333 aaKnown RBP18.86■□□□□ 0.61
VMP1-206ENST00000587945 GTF2E1P29083 439 aaPredicted RBP18.86■□□□□ 0.61
VMP1-206ENST00000587945 ERFEQ4G0M1 354 aa18.86■□□□□ 0.61
VMP1-206ENST00000587945 KIF6Q6ZMV9 814 aa18.86■□□□□ 0.61
VMP1-206ENST00000587945 TAOK3Q9H2K8 898 aa18.86■□□□□ 0.61
VMP1-206ENST00000587945 ZBTB3Q9H5J0 574 aa18.86■□□□□ 0.61
VMP1-206ENST00000587945 GPTP24298 496 aa18.85■□□□□ 0.61
VMP1-206ENST00000587945 NUTM1Q86Y26 1132 aa18.85■□□□□ 0.61
VMP1-206ENST00000587945 C7orf43Q8WVR3 580 aa18.85■□□□□ 0.61
VMP1-206ENST00000587945 HTRA3P83110 453 aa18.84■□□□□ 0.61
VMP1-206ENST00000587945 OLFM4Q6UX06 510 aa18.84■□□□□ 0.61
VMP1-206ENST00000587945 KDM3BQ7LBC6 1761 aa18.83■□□□□ 0.61
VMP1-206ENST00000587945 LTBP3Q9NS15 1303 aa18.83■□□□□ 0.61
VMP1-206ENST00000587945 DLG5Q8TDM6 1919 aa18.83■□□□□ 0.6
VMP1-206ENST00000587945 ANXA1P04083 346 aa18.83■□□□□ 0.6
VMP1-206ENST00000587945 VEGFAP15692 232 aaPredicted RBP18.83■□□□□ 0.6
VMP1-206ENST00000587945 LMOD3Q0VAK6 560 aa18.83■□□□□ 0.6
VMP1-206ENST00000587945 FSTL1Q12841 308 aa18.83■□□□□ 0.6
VMP1-206ENST00000587945 SOGA3Q5TF21 947 aa18.83■□□□□ 0.6
VMP1-206ENST00000587945 SBF1O95248 1867 aa18.83■□□□□ 0.6
VMP1-206ENST00000587945 ABCC12Q96J65 1359 aa18.82■□□□□ 0.6
VMP1-206ENST00000587945 UBN2Q6ZU65 1347 aa18.82■□□□□ 0.6
VMP1-206ENST00000587945 WDR43Q15061 677 aaKnown RBP eCLIP18.82■□□□□ 0.6
VMP1-206ENST00000587945 PDIA6Q15084 440 aa18.82■□□□□ 0.6
VMP1-206ENST00000587945 PROSER3Q2NL68 480 aa18.82■□□□□ 0.6
VMP1-206ENST00000587945 SUSD4Q5VX71 490 aa18.82■□□□□ 0.6
VMP1-206ENST00000587945 DPY19L2Q6NUT2 758 aa18.82■□□□□ 0.6
VMP1-206ENST00000587945 LRP10Q7Z4F1 713 aa18.82■□□□□ 0.6
VMP1-206ENST00000587945 NECTIN2Q92692 538 aa18.82■□□□□ 0.6
VMP1-206ENST00000587945 ADAMTS8Q9UP79 889 aa18.82■□□□□ 0.6
VMP1-206ENST00000587945 ERBB4Q15303 1308 aa18.81■□□□□ 0.6
VMP1-206ENST00000587945 POTECB2RU33 542 aa18.81■□□□□ 0.6
VMP1-206ENST00000587945 KRT24Q2M2I5 525 aa18.81■□□□□ 0.6
VMP1-206ENST00000587945 CCDC93Q567U6 631 aa18.81■□□□□ 0.6
VMP1-206ENST00000587945 DNAJC5GQ8N7S2 189 aa18.81■□□□□ 0.6
VMP1-206ENST00000587945 RUNDC1Q96C34 613 aa18.81■□□□□ 0.6
VMP1-206ENST00000587945 NYXQ9GZU5 481 aa18.81■□□□□ 0.6
VMP1-206ENST00000587945 BABAM1Q9NWV8 329 aa18.81■□□□□ 0.6
VMP1-206ENST00000587945 TRIM35Q9UPQ4 493 aa18.81■□□□□ 0.6
VMP1-206ENST00000587945 LAS1LQ9Y4W2 734 aaKnown RBP18.81■□□□□ 0.6
VMP1-206ENST00000587945 SLX4Q8IY92 1834 aa18.8■□□□□ 0.6
VMP1-206ENST00000587945 ZNF34Q8IZ26 560 aa18.8■□□□□ 0.6
VMP1-206ENST00000587945 SMC1BQ8NDV3 1235 aa18.8■□□□□ 0.6
VMP1-206ENST00000587945 LAMB4A4D0S4 1761 aa18.8■□□□□ 0.6
VMP1-206ENST00000587945 GIGYF2Q6Y7W6 1299 aaKnown RBP18.79■□□□□ 0.6
VMP1-206ENST00000587945 PRKRIP1Q9H875 184 aaPredicted RBP18.79■□□□□ 0.6
VMP1-206ENST00000587945 ZNF277Q9NRM2 450 aaPredicted RBP18.79■□□□□ 0.6
VMP1-206ENST00000587945 CHL1O00533 1208 aa18.78■□□□□ 0.6
VMP1-206ENST00000587945 DDNO94850 711 aaPredicted RBP18.78■□□□□ 0.6
VMP1-206ENST00000587945 ALDH1B1P30837 517 aa18.78■□□□□ 0.6
VMP1-206ENST00000587945 FKBP4Q02790 459 aaKnown RBP eCLIP18.78■□□□□ 0.6
VMP1-206ENST00000587945 CRY2Q49AN0 593 aa18.78■□□□□ 0.6
VMP1-206ENST00000587945 NTSR2O95665 410 aa18.77■□□□□ 0.6
VMP1-206ENST00000587945 AIMP1Q12904 312 aaKnown RBP18.77■□□□□ 0.6
VMP1-206ENST00000587945 C3orf67Q6ZVT6 689 aa18.77■□□□□ 0.6
VMP1-206ENST00000587945 COPS6Q7L5N1 327 aa18.76■□□□□ 0.59
VMP1-206ENST00000587945 SLC51AQ86UW1 340 aa18.76■□□□□ 0.59
VMP1-206ENST00000587945 XAGE3Q8WTP9 111 aa18.76■□□□□ 0.59
VMP1-206ENST00000587945 RTKN2Q8IZC4 609 aa18.75■□□□□ 0.59
VMP1-206ENST00000587945 SYNE4Q8N205 404 aa18.75■□□□□ 0.59
VMP1-206ENST00000587945 RPGRQ92834 1020 aaKnown RBP18.75■□□□□ 0.59
VMP1-206ENST00000587945 TNRC6CQ9HCJ0 1690 aaKnown RBP18.75■□□□□ 0.59
VMP1-206ENST00000587945 FER1L6Q2WGJ9 1857 aa18.75■□□□□ 0.59
VMP1-206ENST00000587945 TIAM2Q8IVF5 1701 aa18.74■□□□□ 0.59
VMP1-206ENST00000587945 IBTKQ9P2D0 1353 aaPredicted RBP18.74■□□□□ 0.59
VMP1-206ENST00000587945 PARP10Q53GL7 1025 aa18.74■□□□□ 0.59
VMP1-206ENST00000587945 PPP1R42Q7Z4L9 355 aa18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms