RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 PLCH1Q4KWH8 1693 aa13.86□□□□□ -0.19
LIG3-204ENST00000585740 AFDNP55196 1824 aaKnown RBP13.86□□□□□ -0.19
LIG3-204ENST00000585740 PRAMEF22A3QJZ6 481 aa13.86□□□□□ -0.19
LIG3-204ENST00000585740 KIF1BPQ96EK5 621 aa13.86□□□□□ -0.19
LIG3-204ENST00000585740 STRN4Q9NRL3 753 aa13.86□□□□□ -0.19
LIG3-204ENST00000585740 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.86□□□□□ -0.19
LIG3-204ENST00000585740 SRGAP3O43295 1099 aa13.85□□□□□ -0.19
LIG3-204ENST00000585740 SURF6O75683 361 aaKnown RBP13.85□□□□□ -0.19
LIG3-204ENST00000585740 NBPF7P0C2Y1 421 aaPredicted RBP13.85□□□□□ -0.19
LIG3-204ENST00000585740 SDSP20132 328 aa13.85□□□□□ -0.19
LIG3-204ENST00000585740 MX1P20591 662 aa13.85□□□□□ -0.19
LIG3-204ENST00000585740 BAG6P46379 1132 aa13.85□□□□□ -0.19
LIG3-204ENST00000585740 SLC4A3P48751 1232 aa13.85□□□□□ -0.19
LIG3-204ENST00000585740 KRT27Q7Z3Y8 459 aa13.85□□□□□ -0.19
LIG3-204ENST00000585740 ERC1Q8IUD2 1116 aa13.85□□□□□ -0.19
LIG3-204ENST00000585740 HSCBQ8IWL3 235 aa13.85□□□□□ -0.19
LIG3-204ENST00000585740 SNX21Q969T3 373 aa13.85□□□□□ -0.19
LIG3-204ENST00000585740 METTL22Q9BUU2 404 aaPredicted RBP13.85□□□□□ -0.19
LIG3-204ENST00000585740 CCDC9Q9Y3X0 531 aaKnown RBP13.85□□□□□ -0.19
LIG3-204ENST00000585740 AK9Q5TCS8 1911 aa13.85□□□□□ -0.19
LIG3-204ENST00000585740 ARFGEF2Q9Y6D5 1785 aa13.85□□□□□ -0.19
LIG3-204ENST00000585740 BRWD3Q6RI45 1802 aa13.85□□□□□ -0.19
LIG3-204ENST00000585740 GRM8O00222 908 aa13.84□□□□□ -0.19
LIG3-204ENST00000585740 VPS72Q15906 364 aa13.84□□□□□ -0.19
LIG3-204ENST00000585740 OTUD7AQ8TE49 926 aaPredicted RBP13.84□□□□□ -0.19
LIG3-204ENST00000585740 XAGE3Q8WTP9 111 aa13.84□□□□□ -0.19
LIG3-204ENST00000585740 TBC1D2Q9BYX2 928 aa13.84□□□□□ -0.19
LIG3-204ENST00000585740 WNK3Q9BYP7 1800 aa13.84□□□□□ -0.19
LIG3-204ENST00000585740 REC8O95072 547 aa13.83□□□□□ -0.2
LIG3-204ENST00000585740 AIMP1Q12904 312 aaKnown RBP13.83□□□□□ -0.2
LIG3-204ENST00000585740 ANKRD13DQ6ZTN6 518 aa13.83□□□□□ -0.2
LIG3-204ENST00000585740 COPS6Q7L5N1 327 aa13.83□□□□□ -0.2
LIG3-204ENST00000585740 RHPN1Q8TCX5 695 aa13.83□□□□□ -0.2
LIG3-204ENST00000585740 KCPQ6ZWJ8 1503 aa13.83□□□□□ -0.2
LIG3-204ENST00000585740 COL15A1P39059 1388 aa13.83□□□□□ -0.2
LIG3-204ENST00000585740 TNS2Q63HR2 1409 aa13.82□□□□□ -0.2
LIG3-204ENST00000585740 A0A0G2JS52 829 aa13.82□□□□□ -0.2
LIG3-204ENST00000585740 ONECUT3O60422 494 aaPredicted RBP13.82□□□□□ -0.2
LIG3-204ENST00000585740 MYL6BP14649 208 aa13.82□□□□□ -0.2
LIG3-204ENST00000585740 NBR1Q14596 966 aa13.82□□□□□ -0.2
LIG3-204ENST00000585740 USP16Q9Y5T5 823 aa13.82□□□□□ -0.2
LIG3-204ENST00000585740 TOGARAM1Q9Y4F4 1720 aa13.81□□□□□ -0.2
LIG3-204ENST00000585740 NEURL1BA8MQ27 555 aa13.81□□□□□ -0.2
LIG3-204ENST00000585740 R3HDM1Q15032 1099 aaKnown RBP13.81□□□□□ -0.2
LIG3-204ENST00000585740 LRP10Q7Z4F1 713 aa13.81□□□□□ -0.2
LIG3-204ENST00000585740 PLBD2Q8NHP8 589 aa13.81□□□□□ -0.2
LIG3-204ENST00000585740 TEX13AQ9BXU3 409 aaPredicted RBP13.81□□□□□ -0.2
LIG3-204ENST00000585740 BTG4Q9NY30 223 aa13.81□□□□□ -0.2
LIG3-204ENST00000585740 DISP2A7MBM2 1401 aa13.81□□□□□ -0.2
LIG3-204ENST00000585740 ITGB4P16144 1822 aa13.8□□□□□ -0.2
LIG3-204ENST00000585740 ERC2O15083 957 aa13.8□□□□□ -0.2
LIG3-204ENST00000585740 IGKV5-2P06315 115 aa13.8□□□□□ -0.2
LIG3-204ENST00000585740 EN1Q05925 392 aaPredicted RBP13.8□□□□□ -0.2
LIG3-204ENST00000585740 OS9Q13438 667 aaPredicted RBP13.8□□□□□ -0.2
LIG3-204ENST00000585740 GCKRQ14397 625 aa13.8□□□□□ -0.2
LIG3-204ENST00000585740 CWF19L2Q2TBE0 894 aaKnown RBP13.8□□□□□ -0.2
LIG3-204ENST00000585740 DDX54Q8TDD1 881 aaKnown RBP13.8□□□□□ -0.2
LIG3-204ENST00000585740 GPATCH3Q96I76 525 aa13.8□□□□□ -0.2
LIG3-204ENST00000585740 MYD88Q99836 296 aa13.8□□□□□ -0.2
LIG3-204ENST00000585740 TMOD3Q9NYL9 352 aa13.8□□□□□ -0.2
LIG3-204ENST00000585740 NUP188Q5SRE5 1749 aa13.8□□□□□ -0.2
LIG3-204ENST00000585740 TTC41PQ6P2S7 1318 aa13.8□□□□□ -0.2
LIG3-204ENST00000585740 USP42Q9H9J4 1324 aaKnown RBP13.8□□□□□ -0.2
LIG3-204ENST00000585740 EPB41L2O43491 1005 aaKnown RBP13.79□□□□□ -0.2
LIG3-204ENST00000585740 RABEP1Q15276 862 aa13.79□□□□□ -0.2
LIG3-204ENST00000585740 VSIG10Q8N0Z9 540 aa13.79□□□□□ -0.2
LIG3-204ENST00000585740 CLASRPQ8N2M8 674 aaKnown RBP13.79□□□□□ -0.2
LIG3-204ENST00000585740 IL27Q8NEV9 243 aa13.79□□□□□ -0.2
LIG3-204ENST00000585740 SUCLG2Q96I99 432 aa13.79□□□□□ -0.2
LIG3-204ENST00000585740 CDCA7Q9BWT1 371 aaPredicted RBP13.79□□□□□ -0.2
LIG3-204ENST00000585740 BCL11AQ9H165 835 aa13.79□□□□□ -0.2
LIG3-204ENST00000585740 YY1P25490 414 aa13.78□□□□□ -0.2
LIG3-204ENST00000585740 G3BP1Q13283 466 aaKnown RBP eCLIP13.78□□□□□ -0.2
LIG3-204ENST00000585740 USP26Q9BXU7 913 aa13.78□□□□□ -0.2
LIG3-204ENST00000585740 TRIM6-TRIM34B2RNG4 842 aa13.77□□□□□ -0.21
LIG3-204ENST00000585740 NRAPQ86VF7 1730 aa13.77□□□□□ -0.21
LIG3-204ENST00000585740 IL1RAPL2Q9NP60 686 aa13.77□□□□□ -0.21
LIG3-204ENST00000585740 NWD2Q9ULI1 1742 aa13.76□□□□□ -0.21
LIG3-204ENST00000585740 GLRX3O76003 335 aaKnown RBP13.76□□□□□ -0.21
LIG3-204ENST00000585740 MCCP23508 829 aa13.76□□□□□ -0.21
LIG3-204ENST00000585740 NFKBIBQ15653 356 aa13.76□□□□□ -0.21
LIG3-204ENST00000585740 FAM98CQ17RN3 349 aaKnown RBP13.76□□□□□ -0.21
LIG3-204ENST00000585740 CNTROBQ8N137 903 aa13.76□□□□□ -0.21
LIG3-204ENST00000585740 KIF2CQ99661 725 aa13.76□□□□□ -0.21
LIG3-204ENST00000585740 BICC1Q9H694 974 aaKnown RBP13.76□□□□□ -0.21
LIG3-204ENST00000585740 THRAP3Q9Y2W1 955 aaKnown RBP13.76□□□□□ -0.21
LIG3-204ENST00000585740 EXOC5O00471 708 aa13.75□□□□□ -0.21
LIG3-204ENST00000585740 FAM182BQ5T319 152 aa13.75□□□□□ -0.21
LIG3-204ENST00000585740 NUTM1Q86Y26 1132 aa13.75□□□□□ -0.21
LIG3-204ENST00000585740 RILPL2Q969X0 211 aa13.75□□□□□ -0.21
LIG3-204ENST00000585740 KAZALD1Q96I82 304 aa13.75□□□□□ -0.21
LIG3-204ENST00000585740 ESYT1Q9BSJ8 1104 aa13.75□□□□□ -0.21
LIG3-204ENST00000585740 ANTXR1Q9H6X2 564 aa13.75□□□□□ -0.21
LIG3-204ENST00000585740 CHMP5Q9NZZ3 219 aa13.75□□□□□ -0.21
LIG3-204ENST00000585740 NBPF26B4DH59 902 aa13.74□□□□□ -0.21
LIG3-204ENST00000585740 IFIT2P09913 472 aaKnown RBP13.74□□□□□ -0.21
LIG3-204ENST00000585740 CHMLP26374 656 aa13.74□□□□□ -0.21
LIG3-204ENST00000585740 RABL6Q3YEC7 729 aaPredicted RBP13.74□□□□□ -0.21
LIG3-204ENST00000585740 NBPF14Q5TI25 921 aa13.74□□□□□ -0.21
LIG3-204ENST00000585740 NBPF10Q6P3W6 841 aaKnown RBP13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms