RNA–Protein interactions for RNA: ENST00000585466.1

CLIP3-202, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 2

Gene CLIP3, Length 368 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-202ENST00000585466 SETDB2Q96T68 719 aa19.88■□□□□ 0.77
CLIP3-202ENST00000585466 SBF1O95248 1867 aa19.88■□□□□ 0.77
CLIP3-202ENST00000585466 ATP10DQ9P241 1426 aa19.87■□□□□ 0.77
CLIP3-202ENST00000585466 DALRD3Q5D0E6 543 aaKnown RBP19.87■□□□□ 0.77
CLIP3-202ENST00000585466 NPM2Q86SE8 214 aaKnown RBP19.87■□□□□ 0.77
CLIP3-202ENST00000585466 ARFGEF2Q9Y6D5 1785 aa19.86■□□□□ 0.77
CLIP3-202ENST00000585466 MAP3K15Q6ZN16 1313 aa19.86■□□□□ 0.77
CLIP3-202ENST00000585466 CFAP44Q96MT7 982 aa19.86■□□□□ 0.77
CLIP3-202ENST00000585466 BRIP1Q9BX63 1249 aa19.86■□□□□ 0.77
CLIP3-202ENST00000585466 TNRC6CQ9HCJ0 1690 aaKnown RBP19.85■□□□□ 0.77
CLIP3-202ENST00000585466 ERVV-1B6SEH8 477 aa19.85■□□□□ 0.77
CLIP3-202ENST00000585466 MYL6BP14649 208 aa19.85■□□□□ 0.77
CLIP3-202ENST00000585466 C2CD5Q86YS7 1000 aa19.85■□□□□ 0.77
CLIP3-202ENST00000585466 CNBD1Q8NA66 436 aa19.85■□□□□ 0.77
CLIP3-202ENST00000585466 ZNF652Q9Y2D9 606 aa19.85■□□□□ 0.77
CLIP3-202ENST00000585466 ANXA1P04083 346 aa19.84■□□□□ 0.77
CLIP3-202ENST00000585466 NGEFQ8N5V2 710 aa19.84■□□□□ 0.77
CLIP3-202ENST00000585466 MBIPQ9NS73 344 aa19.84■□□□□ 0.77
CLIP3-202ENST00000585466 EIF2S2P20042 333 aaKnown RBP19.83■□□□□ 0.77
CLIP3-202ENST00000585466 NIP7Q9Y221 180 aaKnown RBP eCLIP19.83■□□□□ 0.77
CLIP3-202ENST00000585466 CACNA1SQ13698 1873 aa19.83■□□□□ 0.76
CLIP3-202ENST00000585466 SLX4Q8IY92 1834 aa19.83■□□□□ 0.76
CLIP3-202ENST00000585466 ANKRD36CQ5JPF3 1778 aa19.83■□□□□ 0.76
CLIP3-202ENST00000585466 UBN2Q6ZU65 1347 aa19.82■□□□□ 0.76
CLIP3-202ENST00000585466 ANP32CO43423 234 aa19.82■□□□□ 0.76
CLIP3-202ENST00000585466 ARHGAP27Q6ZUM4 889 aa19.82■□□□□ 0.76
CLIP3-202ENST00000585466 LAS1LQ9Y4W2 734 aaKnown RBP19.82■□□□□ 0.76
CLIP3-202ENST00000585466 KLRG2A4D1S0 409 aaPredicted RBP19.81■□□□□ 0.76
CLIP3-202ENST00000585466 H0YIN7 160 aa19.81■□□□□ 0.76
CLIP3-202ENST00000585466 PDE6BP35913 854 aa19.81■□□□□ 0.76
CLIP3-202ENST00000585466 NBPF5PQ86XG9 351 aaPredicted RBP19.81■□□□□ 0.76
CLIP3-202ENST00000585466 ZBTB3Q9H5J0 574 aa19.81■□□□□ 0.76
CLIP3-202ENST00000585466 MRS2Q9HD23 443 aa19.81■□□□□ 0.76
CLIP3-202ENST00000585466 IFT57Q9NWB7 429 aa19.81■□□□□ 0.76
CLIP3-202ENST00000585466 ABCC12Q96J65 1359 aa19.81■□□□□ 0.76
CLIP3-202ENST00000585466 FER1L6Q2WGJ9 1857 aa19.8■□□□□ 0.76
CLIP3-202ENST00000585466 HOXB7P09629 217 aa19.8■□□□□ 0.76
CLIP3-202ENST00000585466 PRELPP51888 382 aa19.8■□□□□ 0.76
CLIP3-202ENST00000585466 ZNF34Q8IZ26 560 aa19.8■□□□□ 0.76
CLIP3-202ENST00000585466 TTLL6Q8N841 843 aa19.8■□□□□ 0.76
CLIP3-202ENST00000585466 IBTKQ9P2D0 1353 aaPredicted RBP19.8■□□□□ 0.76
CLIP3-202ENST00000585466 SRGNP10124 158 aa19.79■□□□□ 0.76
CLIP3-202ENST00000585466 ST5P78524 1137 aa19.79■□□□□ 0.76
CLIP3-202ENST00000585466 GIGYF2Q6Y7W6 1299 aaKnown RBP19.79■□□□□ 0.76
CLIP3-202ENST00000585466 KIF6Q6ZMV9 814 aa19.79■□□□□ 0.76
CLIP3-202ENST00000585466 NECTIN2Q92692 538 aa19.79■□□□□ 0.76
CLIP3-202ENST00000585466 PDZRN3Q9UPQ7 1066 aa19.79■□□□□ 0.76
CLIP3-202ENST00000585466 CCDC27Q2M243 656 aa19.78■□□□□ 0.76
CLIP3-202ENST00000585466 DDX21Q9NR30 783 aaKnown RBP eCLIP19.78■□□□□ 0.76
CLIP3-202ENST00000585466 CCDC88AQ3V6T2 1871 aa19.77■□□□□ 0.76
CLIP3-202ENST00000585466 RIC1Q4ADV7 1423 aa19.77■□□□□ 0.76
CLIP3-202ENST00000585466 SENP3-EIF4A1A0A087X0R7 540 aa19.77■□□□□ 0.76
CLIP3-202ENST00000585466 DUSP27Q5VZP5 1158 aa19.77■□□□□ 0.76
CLIP3-202ENST00000585466 TPTE2Q6XPS3 522 aa19.77■□□□□ 0.76
CLIP3-202ENST00000585466 CHPF2Q9P2E5 772 aa19.77■□□□□ 0.76
CLIP3-202ENST00000585466 NFKBIEO00221 500 aa19.76■□□□□ 0.75
CLIP3-202ENST00000585466 GPTP24298 496 aa19.76■□□□□ 0.75
CLIP3-202ENST00000585466 GNAI1P63096 354 aa19.76■□□□□ 0.75
CLIP3-202ENST00000585466 RASSF7Q02833 373 aa19.76■□□□□ 0.75
CLIP3-202ENST00000585466 STYK1Q6J9G0 422 aa19.76■□□□□ 0.75
CLIP3-202ENST00000585466 XAGE3Q8WTP9 111 aa19.76■□□□□ 0.75
CLIP3-202ENST00000585466 FAM177BA6PVY3 158 aa19.75■□□□□ 0.75
CLIP3-202ENST00000585466 NTSR2O95665 410 aa19.75■□□□□ 0.75
CLIP3-202ENST00000585466 NCBP3Q53F19 620 aaKnown RBP19.75■□□□□ 0.75
CLIP3-202ENST00000585466 HDGFL1Q5TGJ6 251 aa19.75■□□□□ 0.75
CLIP3-202ENST00000585466 SUSD4Q5VX71 490 aa19.75■□□□□ 0.75
CLIP3-202ENST00000585466 C9orf131Q5VYM1 1079 aa19.75■□□□□ 0.75
CLIP3-202ENST00000585466 COPS6Q7L5N1 327 aa19.75■□□□□ 0.75
CLIP3-202ENST00000585466 WWC1Q8IX03 1113 aa19.75■□□□□ 0.75
CLIP3-202ENST00000585466 ZNF622Q969S3 477 aaKnown RBP eCLIP19.75■□□□□ 0.75
CLIP3-202ENST00000585466 CALD1Q05682 793 aaKnown RBP19.74■□□□□ 0.75
CLIP3-202ENST00000585466 CRY2Q49AN0 593 aa19.74■□□□□ 0.75
CLIP3-202ENST00000585466 NUTM1Q86Y26 1132 aa19.74■□□□□ 0.75
CLIP3-202ENST00000585466 C8orf58Q8NAV2 365 aa19.74■□□□□ 0.75
CLIP3-202ENST00000585466 C7orf43Q8WVR3 580 aa19.74■□□□□ 0.75
CLIP3-202ENST00000585466 MASTLQ96GX5 879 aa19.74■□□□□ 0.75
CLIP3-202ENST00000585466 TIAM2Q8IVF5 1701 aa19.73■□□□□ 0.75
CLIP3-202ENST00000585466 DICER1Q9UPY3 1922 aaKnown RBP19.73■□□□□ 0.75
CLIP3-202ENST00000585466 ERFEQ4G0M1 354 aa19.73■□□□□ 0.75
CLIP3-202ENST00000585466 LAMB2P55268 1798 aa19.72■□□□□ 0.75
CLIP3-202ENST00000585466 NPHP1O15259 732 aa19.72■□□□□ 0.75
CLIP3-202ENST00000585466 PRPF40BQ6NWY9 871 aaKnown RBP19.72■□□□□ 0.75
CLIP3-202ENST00000585466 SNED1Q8TER0 1413 aa19.72■□□□□ 0.75
CLIP3-202ENST00000585466 CNKSR1Q969H4 720 aa19.72■□□□□ 0.75
CLIP3-202ENST00000585466 NYXQ9GZU5 481 aa19.72■□□□□ 0.75
CLIP3-202ENST00000585466 C21orf2O43822 256 aa19.71■□□□□ 0.75
CLIP3-202ENST00000585466 NPR1P16066 1061 aa19.71■□□□□ 0.75
CLIP3-202ENST00000585466 C1QTNF8P60827 252 aa19.71■□□□□ 0.75
CLIP3-202ENST00000585466 AIMP1Q12904 312 aaKnown RBP19.71■□□□□ 0.75
CLIP3-202ENST00000585466 C3orf67Q6ZVT6 689 aa19.71■□□□□ 0.75
CLIP3-202ENST00000585466 TSPYL6Q8N831 410 aa19.71■□□□□ 0.75
CLIP3-202ENST00000585466 ZNF526Q8TF50 670 aaPredicted RBP19.71■□□□□ 0.75
CLIP3-202ENST00000585466 DBF4Q9UBU7 674 aaPredicted RBP19.71■□□□□ 0.75
CLIP3-202ENST00000585466 TSR2Q969E8 191 aaKnown RBP19.7■□□□□ 0.74
CLIP3-202ENST00000585466 GPBP1L1Q9HC44 474 aaPredicted RBP19.7■□□□□ 0.74
CLIP3-202ENST00000585466 RNF181Q9P0P0 153 aa19.7■□□□□ 0.74
CLIP3-202ENST00000585466 ELL2O00472 640 aaPredicted RBP19.69■□□□□ 0.74
CLIP3-202ENST00000585466 KIF3CO14782 793 aa19.69■□□□□ 0.74
CLIP3-202ENST00000585466 PARP10Q53GL7 1025 aa19.69■□□□□ 0.74
CLIP3-202ENST00000585466 NLRP10Q86W26 655 aa19.69■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms