RNA–Protein interactions for RNA: ENST00000585370.1

LIG3-203, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 235 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-203ENST00000585370 SSFA2P28290 1259 aa13.07□□□□□ -0.32
LIG3-203ENST00000585370 GNPATO15228 680 aa13.06□□□□□ -0.32
LIG3-203ENST00000585370 GIGYF1O75420 1035 aaPredicted RBP13.06□□□□□ -0.32
LIG3-203ENST00000585370 FLIIQ13045 1269 aa13.06□□□□□ -0.32
LIG3-203ENST00000585370 SLC4A9Q96Q91 983 aa13.06□□□□□ -0.32
LIG3-203ENST00000585370 DBF4Q9UBU7 674 aaPredicted RBP13.06□□□□□ -0.32
LIG3-203ENST00000585370 KDM3BQ7LBC6 1761 aa13.05□□□□□ -0.32
LIG3-203ENST00000585370 CABP4P57796 275 aa13.05□□□□□ -0.32
LIG3-203ENST00000585370 ZNF790Q6PG37 636 aa13.05□□□□□ -0.32
LIG3-203ENST00000585370 FKBP5Q13451 457 aaPredicted RBP13.04□□□□□ -0.32
LIG3-203ENST00000585370 RPAP2Q8IXW5 612 aaPredicted RBP13.04□□□□□ -0.32
LIG3-203ENST00000585370 TTC5Q8N0Z6 440 aa13.04□□□□□ -0.32
LIG3-203ENST00000585370 NFATC2IPQ8NCF5 419 aa13.04□□□□□ -0.32
LIG3-203ENST00000585370 GCC1Q96CN9 775 aa13.04□□□□□ -0.32
LIG3-203ENST00000585370 RBM19Q9Y4C8 960 aaKnown RBP13.04□□□□□ -0.32
LIG3-203ENST00000585370 KDM6AO15550 1401 aaPredicted RBP13.04□□□□□ -0.32
LIG3-203ENST00000585370 SCN11AQ9UI33 1791 aa13.03□□□□□ -0.32
LIG3-203ENST00000585370 KCNQ3O43525 872 aa13.03□□□□□ -0.32
LIG3-203ENST00000585370 EIF2S2P20042 333 aaKnown RBP13.03□□□□□ -0.32
LIG3-203ENST00000585370 G2E3Q7L622 706 aa13.03□□□□□ -0.32
LIG3-203ENST00000585370 SMC5Q8IY18 1101 aa13.03□□□□□ -0.32
LIG3-203ENST00000585370 HYPKQ9NX55 129 aa13.03□□□□□ -0.32
LIG3-203ENST00000585370 MRC1P22897 1456 aa13.03□□□□□ -0.32
LIG3-203ENST00000585370 GNAI3P08754 354 aa13.02□□□□□ -0.33
LIG3-203ENST00000585370 SNRPA1P09661 255 aaKnown RBP13.02□□□□□ -0.33
LIG3-203ENST00000585370 TRAPPC3LQ5T215 181 aa13.02□□□□□ -0.33
LIG3-203ENST00000585370 FMNL2Q96PY5 1086 aa13.02□□□□□ -0.33
LIG3-203ENST00000585370 RBM42Q9BTD8 480 aaKnown RBP13.02□□□□□ -0.33
LIG3-203ENST00000585370 WWC3Q9ULE0 1092 aa13.02□□□□□ -0.33
LIG3-203ENST00000585370 HDAC5Q9UQL6 1122 aa13.02□□□□□ -0.33
LIG3-203ENST00000585370 MMP10P09238 476 aa13.01□□□□□ -0.33
LIG3-203ENST00000585370 RC3H1Q5TC82 1133 aaKnown RBP13.01□□□□□ -0.33
LIG3-203ENST00000585370 DDX21Q9NR30 783 aaKnown RBP eCLIP13.01□□□□□ -0.33
LIG3-203ENST00000585370 RTCBQ9Y3I0 505 aaKnown RBP13.01□□□□□ -0.33
LIG3-203ENST00000585370 PXDNLA1KZ92 1463 aa13.01□□□□□ -0.33
LIG3-203ENST00000585370 SIPA1L3O60292 1781 aaPredicted RBP13.01□□□□□ -0.33
LIG3-203ENST00000585370 DDX58O95786 925 aaKnown RBP13□□□□□ -0.33
LIG3-203ENST00000585370 SLC4A10Q6U841 1118 aa13□□□□□ -0.33
LIG3-203ENST00000585370 ARHGEF1Q92888 912 aaKnown RBP13□□□□□ -0.33
LIG3-203ENST00000585370 PDZRN3Q9UPQ7 1066 aa13□□□□□ -0.33
LIG3-203ENST00000585370 ATP10DQ9P241 1426 aa12.99□□□□□ -0.33
LIG3-203ENST00000585370 ERBB4Q15303 1308 aa12.99□□□□□ -0.33
LIG3-203ENST00000585370 HMMRO75330 724 aa12.99□□□□□ -0.33
LIG3-203ENST00000585370 PDE4AP27815 886 aa12.99□□□□□ -0.33
LIG3-203ENST00000585370 ANKRD44Q8N8A2 993 aa12.99□□□□□ -0.33
LIG3-203ENST00000585370 NECTIN2Q92692 538 aa12.99□□□□□ -0.33
LIG3-203ENST00000585370 BACH2Q9BYV9 841 aa12.99□□□□□ -0.33
LIG3-203ENST00000585370 CHPF2Q9P2E5 772 aa12.99□□□□□ -0.33
LIG3-203ENST00000585370 VIRMAQ69YN4 1812 aaKnown RBP12.99□□□□□ -0.33
LIG3-203ENST00000585370 CNTNAP4Q9C0A0 1308 aa12.98□□□□□ -0.33
LIG3-203ENST00000585370 PTCD1O75127 700 aaKnown RBP12.98□□□□□ -0.33
LIG3-203ENST00000585370 RPS6KA4O75676 772 aa12.98□□□□□ -0.33
LIG3-203ENST00000585370 GNAI2P04899 355 aa12.98□□□□□ -0.33
LIG3-203ENST00000585370 ADRA2BP18089 450 aa12.98□□□□□ -0.33
LIG3-203ENST00000585370 NLGN1Q8N2Q7 840 aa12.98□□□□□ -0.33
LIG3-203ENST00000585370 DNAAF4Q8WXU2 420 aa12.98□□□□□ -0.33
LIG3-203ENST00000585370 SRCIN1Q9C0H9 1055 aa12.98□□□□□ -0.33
LIG3-203ENST00000585370 MYH14Q7Z406 1995 aaKnown RBP12.98□□□□□ -0.33
LIG3-203ENST00000585370 ZNF831Q5JPB2 1677 aa12.97□□□□□ -0.33
LIG3-203ENST00000585370 F6X3S4 739 aa12.97□□□□□ -0.33
LIG3-203ENST00000585370 ALDH1L1O75891 902 aa12.97□□□□□ -0.33
LIG3-203ENST00000585370 GYS1P13807 737 aa12.97□□□□□ -0.33
LIG3-203ENST00000585370 RGS3P49796 1198 aa12.97□□□□□ -0.33
LIG3-203ENST00000585370 NUCB1Q02818 461 aa12.97□□□□□ -0.33
LIG3-203ENST00000585370 SLC39A6Q13433 755 aa12.97□□□□□ -0.33
LIG3-203ENST00000585370 FAM161AQ3B820 660 aa12.97□□□□□ -0.33
LIG3-203ENST00000585370 KSR2Q6VAB6 950 aa12.97□□□□□ -0.33
LIG3-203ENST00000585370 ZNF496Q96IT1 587 aaPredicted RBP12.97□□□□□ -0.33
LIG3-203ENST00000585370 TEX13AQ9BXU3 409 aaPredicted RBP12.97□□□□□ -0.33
LIG3-203ENST00000585370 PHAXQ9H814 394 aaKnown RBP12.97□□□□□ -0.33
LIG3-203ENST00000585370 ADCY9O60503 1353 aa12.96□□□□□ -0.33
LIG3-203ENST00000585370 IBTKQ9P2D0 1353 aaPredicted RBP12.96□□□□□ -0.33
LIG3-203ENST00000585370 RFC4P35249 363 aa12.96□□□□□ -0.33
LIG3-203ENST00000585370 DCTPP1Q9H773 170 aa12.96□□□□□ -0.33
LIG3-203ENST00000585370 ZBTB47Q9UFB7 747 aaPredicted RBP12.96□□□□□ -0.33
LIG3-203ENST00000585370 A0A0G2JLW4 131 aa12.95□□□□□ -0.34
LIG3-203ENST00000585370 TGFB2P61812 414 aa12.95□□□□□ -0.34
LIG3-203ENST00000585370 CEP85Q6P2H3 762 aa12.95□□□□□ -0.34
LIG3-203ENST00000585370 SIRT2Q8IXJ6 389 aa12.95□□□□□ -0.34
LIG3-203ENST00000585370 MEIS3Q99687 375 aa12.95□□□□□ -0.34
LIG3-203ENST00000585370 GPBP1L1Q9HC44 474 aaPredicted RBP12.95□□□□□ -0.34
LIG3-203ENST00000585370 COL5A3P25940 1745 aaPredicted RBP12.95□□□□□ -0.34
LIG3-203ENST00000585370 PI4KAP2A4QPH2 592 aa12.94□□□□□ -0.34
LIG3-203ENST00000585370 CRKLP46109 303 aaKnown RBP12.94□□□□□ -0.34
LIG3-203ENST00000585370 BEND3Q5T5X7 828 aa12.94□□□□□ -0.34
LIG3-203ENST00000585370 INTS5Q6P9B9 1019 aaKnown RBP12.94□□□□□ -0.34
LIG3-203ENST00000585370 CHD1LQ86WJ1 897 aa12.94□□□□□ -0.34
LIG3-203ENST00000585370 VSIG10Q8N0Z9 540 aa12.94□□□□□ -0.34
LIG3-203ENST00000585370 PI4KAP1Q8N8J0 262 aa12.94□□□□□ -0.34
LIG3-203ENST00000585370 ZNF526Q8TF50 670 aaPredicted RBP12.94□□□□□ -0.34
LIG3-203ENST00000585370 CICQ96RK0 1608 aaPredicted RBP12.94□□□□□ -0.34
LIG3-203ENST00000585370 KIF13BQ9NQT8 1826 aa12.93□□□□□ -0.34
LIG3-203ENST00000585370 UBTFL1P0CB47 393 aaPredicted RBP12.93□□□□□ -0.34
LIG3-203ENST00000585370 DPEP1P16444 411 aa12.93□□□□□ -0.34
LIG3-203ENST00000585370 ATP8B2P98198 1209 aa12.93□□□□□ -0.34
LIG3-203ENST00000585370 PDIA6Q15084 440 aa12.93□□□□□ -0.34
LIG3-203ENST00000585370 USP44Q9H0E7 712 aa12.93□□□□□ -0.34
LIG3-203ENST00000585370 C1orf115Q9H7X2 142 aa12.93□□□□□ -0.34
LIG3-203ENST00000585370 SRP68Q9UHB9 627 aaKnown RBP12.93□□□□□ -0.34
LIG3-203ENST00000585370 KCNA3P22001 575 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms