RNA–Protein interactions for RNA: ENST00000585031.2

TOP3A-220, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 4

Gene TOP3A, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-220ENST00000585031 ZNF330Q9Y3S2 320 aaPredicted RBP24.64■■□□□ 1.54
TOP3A-220ENST00000585031 CAMTA2O94983 1202 aa24.63■■□□□ 1.53
TOP3A-220ENST00000585031 A1BGP04217 495 aa24.63■■□□□ 1.53
TOP3A-220ENST00000585031 STYK1Q6J9G0 422 aa24.63■■□□□ 1.53
TOP3A-220ENST00000585031 BCORQ6W2J9 1755 aa24.62■■□□□ 1.53
TOP3A-220ENST00000585031 DEFB115Q30KQ5 88 aa24.62■■□□□ 1.53
TOP3A-220ENST00000585031 OLFM4Q6UX06 510 aa24.62■■□□□ 1.53
TOP3A-220ENST00000585031 IL17REQ8NFR9 667 aa24.62■■□□□ 1.53
TOP3A-220ENST00000585031 CNKSR1Q969H4 720 aa24.62■■□□□ 1.53
TOP3A-220ENST00000585031 HEG1Q9ULI3 1381 aa24.62■■□□□ 1.53
TOP3A-220ENST00000585031 ZNF541Q9H0D2 1346 aa24.61■■□□□ 1.53
TOP3A-220ENST00000585031 AMER1Q5JTC6 1135 aaPredicted RBP24.61■■□□□ 1.53
TOP3A-220ENST00000585031 CNBD1Q8NA66 436 aa24.61■■□□□ 1.53
TOP3A-220ENST00000585031 MAP2K1Q02750 393 aaPredicted RBP24.6■■□□□ 1.53
TOP3A-220ENST00000585031 SOGA3Q5TF21 947 aa24.6■■□□□ 1.53
TOP3A-220ENST00000585031 ZNF790Q6PG37 636 aa24.6■■□□□ 1.53
TOP3A-220ENST00000585031 MASTLQ96GX5 879 aa24.6■■□□□ 1.53
TOP3A-220ENST00000585031 IL6STP40189 918 aaPredicted RBP24.59■■□□□ 1.53
TOP3A-220ENST00000585031 MLLT1Q03111 559 aaPredicted RBP24.59■■□□□ 1.53
TOP3A-220ENST00000585031 TTC5Q8N0Z6 440 aa24.59■■□□□ 1.53
TOP3A-220ENST00000585031 SETDB2Q96T68 719 aa24.59■■□□□ 1.53
TOP3A-220ENST00000585031 KCNQ3O43525 872 aa24.58■■□□□ 1.53
TOP3A-220ENST00000585031 EAPPQ56P03 285 aaPredicted RBP24.58■■□□□ 1.53
TOP3A-220ENST00000585031 TIMELESSQ9UNS1 1208 aa24.58■■□□□ 1.53
TOP3A-220ENST00000585031 KNSTRNQ9Y448 316 aa24.58■■□□□ 1.53
TOP3A-220ENST00000585031 WDR33Q9C0J8 1336 aaKnown RBP24.58■■□□□ 1.52
TOP3A-220ENST00000585031 PIP4K2AP48426 406 aaPredicted RBP24.57■■□□□ 1.52
TOP3A-220ENST00000585031 EIF4G2P78344 907 aaKnown RBP eCLIP24.57■■□□□ 1.52
TOP3A-220ENST00000585031 ZNF277Q9NRM2 450 aaPredicted RBP24.57■■□□□ 1.52
TOP3A-220ENST00000585031 CNTROBQ8N137 903 aa24.56■■□□□ 1.52
TOP3A-220ENST00000585031 HACL1Q9UJ83 578 aa24.56■■□□□ 1.52
TOP3A-220ENST00000585031 MAP1SQ66K74 1059 aaPredicted RBP24.55■■□□□ 1.52
TOP3A-220ENST00000585031 EPHX2P34913 555 aa24.54■■□□□ 1.52
TOP3A-220ENST00000585031 ST5P78524 1137 aa24.54■■□□□ 1.52
TOP3A-220ENST00000585031 TEX13AQ9BXU3 409 aaPredicted RBP24.54■■□□□ 1.52
TOP3A-220ENST00000585031 CLEC11AQ9Y240 323 aa24.54■■□□□ 1.52
TOP3A-220ENST00000585031 PNMA8AQ86V59 439 aaPredicted RBP24.53■■□□□ 1.52
TOP3A-220ENST00000585031 PRAMEF22A3QJZ6 481 aa24.52■■□□□ 1.52
TOP3A-220ENST00000585031 CCDC85CA6NKD9 419 aa24.52■■□□□ 1.52
TOP3A-220ENST00000585031 DIAPH1O60610 1272 aaKnown RBP24.52■■□□□ 1.52
TOP3A-220ENST00000585031 FKBP4Q02790 459 aaKnown RBP eCLIP24.52■■□□□ 1.52
TOP3A-220ENST00000585031 FMR1Q06787 632 aaKnown RBP eCLIP24.52■■□□□ 1.52
TOP3A-220ENST00000585031 CCDC93Q567U6 631 aa24.52■■□□□ 1.52
TOP3A-220ENST00000585031 DZIP3Q86Y13 1208 aaKnown RBP24.52■■□□□ 1.52
TOP3A-220ENST00000585031 USP16Q9Y5T5 823 aa24.52■■□□□ 1.52
TOP3A-220ENST00000585031 RNF123Q5XPI4 1314 aa24.52■■□□□ 1.52
TOP3A-220ENST00000585031 KLRG2A4D1S0 409 aaPredicted RBP24.51■■□□□ 1.51
TOP3A-220ENST00000585031 NPHP1O15259 732 aa24.51■■□□□ 1.51
TOP3A-220ENST00000585031 TEFQ10587 303 aa24.51■■□□□ 1.51
TOP3A-220ENST00000585031 LTBP1Q14766 1721 aa24.51■■□□□ 1.51
TOP3A-220ENST00000585031 COL4A5P29400 1685 aa24.5■■□□□ 1.51
TOP3A-220ENST00000585031 GNAT3A8MTJ3 354 aa24.49■■□□□ 1.51
TOP3A-220ENST00000585031 FZD9O00144 591 aa24.49■■□□□ 1.51
TOP3A-220ENST00000585031 NPR1P16066 1061 aa24.49■■□□□ 1.51
TOP3A-220ENST00000585031 FMNL2Q96PY5 1086 aa24.49■■□□□ 1.51
TOP3A-220ENST00000585031 COL3A1P02461 1466 aaPredicted RBP24.49■■□□□ 1.51
TOP3A-220ENST00000585031 NBPF5PQ86XG9 351 aaPredicted RBP24.48■■□□□ 1.51
TOP3A-220ENST00000585031 SNED1Q8TER0 1413 aa24.48■■□□□ 1.51
TOP3A-220ENST00000585031 DDX21Q9NR30 783 aaKnown RBP eCLIP24.48■■□□□ 1.51
TOP3A-220ENST00000585031 SYNE4Q8N205 404 aa24.47■■□□□ 1.51
TOP3A-220ENST00000585031 ABT1Q9ULW3 272 aaKnown RBP24.47■■□□□ 1.51
TOP3A-220ENST00000585031 THSD7BQ9C0I4 1608 aa24.46■■□□□ 1.51
TOP3A-220ENST00000585031 CEMIPQ8WUJ3 1361 aa24.46■■□□□ 1.51
TOP3A-220ENST00000585031 PER1O15534 1290 aaPredicted RBP24.45■■□□□ 1.5
TOP3A-220ENST00000585031 IARSP41252 1262 aaKnown RBP24.45■■□□□ 1.5
TOP3A-220ENST00000585031 SLC51AQ86UW1 340 aa24.45■■□□□ 1.5
TOP3A-220ENST00000585031 CAPNS2Q96L46 248 aa24.45■■□□□ 1.5
TOP3A-220ENST00000585031 TNRC18O15417 2968 aaPredicted RBP24.45■■□□□ 1.5
TOP3A-220ENST00000585031 CLEC4GQ6UXB4 293 aa24.44■■□□□ 1.5
TOP3A-220ENST00000585031 RTKN2Q8IZC4 609 aa24.44■■□□□ 1.5
TOP3A-220ENST00000585031 GPC2Q8N158 579 aa24.44■■□□□ 1.5
TOP3A-220ENST00000585031 PHACTR3Q96KR7 559 aa24.44■■□□□ 1.5
TOP3A-220ENST00000585031 GPR101Q96P66 508 aaPredicted RBP24.44■■□□□ 1.5
TOP3A-220ENST00000585031 FAM177BA6PVY3 158 aa24.43■■□□□ 1.5
TOP3A-220ENST00000585031 NBPF26B4DH59 902 aa24.43■■□□□ 1.5
TOP3A-220ENST00000585031 NBPF10Q6P3W6 841 aaKnown RBP24.43■■□□□ 1.5
TOP3A-220ENST00000585031 NBPF15Q8N660 670 aa24.43■■□□□ 1.5
TOP3A-220ENST00000585031 TRPM7Q96QT4 1865 aa24.43■■□□□ 1.5
TOP3A-220ENST00000585031 BTBD11A6QL63 1104 aa24.42■■□□□ 1.5
TOP3A-220ENST00000585031 ECE1P42892 770 aa24.42■■□□□ 1.5
TOP3A-220ENST00000585031 CC2D1BQ5T0F9 858 aaKnown RBP24.42■■□□□ 1.5
TOP3A-220ENST00000585031 BEGAINQ9BUH8 593 aa24.42■■□□□ 1.5
TOP3A-220ENST00000585031 U2SURPO15042 1029 aaKnown RBP24.41■■□□□ 1.5
TOP3A-220ENST00000585031 NPM2Q86SE8 214 aaKnown RBP24.41■■□□□ 1.5
TOP3A-220ENST00000585031 GAS2L2Q8NHY3 880 aa24.41■■□□□ 1.5
TOP3A-220ENST00000585031 NIP7Q9Y221 180 aaKnown RBP eCLIP24.41■■□□□ 1.5
TOP3A-220ENST00000585031 HLFQ16534 295 aa24.4■■□□□ 1.5
TOP3A-220ENST00000585031 CST9Q5W186 159 aa24.4■■□□□ 1.5
TOP3A-220ENST00000585031 CYP4F22Q6NT55 531 aa24.4■■□□□ 1.5
TOP3A-220ENST00000585031 EPS15P42566 896 aa24.39■■□□□ 1.49
TOP3A-220ENST00000585031 TPTE2Q6XPS3 522 aa24.39■■□□□ 1.49
TOP3A-220ENST00000585031 TSKSQ9UJT2 592 aa24.39■■□□□ 1.49
TOP3A-220ENST00000585031 TRAF5O00463 557 aa24.38■■□□□ 1.49
TOP3A-220ENST00000585031 MAP2K2P36507 400 aa24.38■■□□□ 1.49
TOP3A-220ENST00000585031 SCNN1DP51172 638 aa24.38■■□□□ 1.49
TOP3A-220ENST00000585031 GJA3Q9Y6H8 435 aa24.38■■□□□ 1.49
TOP3A-220ENST00000585031 CASP8AP2Q9UKL3 1982 aa24.38■■□□□ 1.49
TOP3A-220ENST00000585031 KIF7Q2M1P5 1343 aa24.37■■□□□ 1.49
TOP3A-220ENST00000585031 PSMD1Q99460 953 aa24.36■■□□□ 1.49
TOP3A-220ENST00000585031 MCOLN1Q9GZU1 580 aa24.36■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms