RNA–Protein interactions for RNA: ENST00000583780.1

SHMT1-210, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 332 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-210ENST00000583780 USP16Q9Y5T5 823 aa29.38■■■□□ 2.29
SHMT1-210ENST00000583780 CHADLQ6NUI6 762 aa29.37■■■□□ 2.29
SHMT1-210ENST00000583780 PHACTR3Q96KR7 559 aa29.37■■■□□ 2.29
SHMT1-210ENST00000583780 PRPF40BQ6NWY9 871 aaKnown RBP29.36■■■□□ 2.29
SHMT1-210ENST00000583780 CNBD1Q8NA66 436 aa29.36■■■□□ 2.29
SHMT1-210ENST00000583780 C7orf43Q8WVR3 580 aa29.36■■■□□ 2.29
SHMT1-210ENST00000583780 ARFGEF2Q9Y6D5 1785 aa29.35■■■□□ 2.29
SHMT1-210ENST00000583780 MASTLQ96GX5 879 aa29.35■■■□□ 2.29
SHMT1-210ENST00000583780 DZIP3Q86Y13 1208 aaKnown RBP29.34■■■□□ 2.29
SHMT1-210ENST00000583780 CREBZFQ9NS37 354 aa29.34■■■□□ 2.29
SHMT1-210ENST00000583780 BCORQ6W2J9 1755 aa29.34■■■□□ 2.29
SHMT1-210ENST00000583780 BTBD11A6QL63 1104 aa29.33■■■□□ 2.29
SHMT1-210ENST00000583780 PIP4K2AP48426 406 aaPredicted RBP29.33■■■□□ 2.29
SHMT1-210ENST00000583780 NPC1L1Q9UHC9 1359 aa29.33■■■□□ 2.29
SHMT1-210ENST00000583780 PRAMEF22A3QJZ6 481 aa29.32■■■□□ 2.28
SHMT1-210ENST00000583780 ST5P78524 1137 aa29.32■■■□□ 2.28
SHMT1-210ENST00000583780 MKRN1Q9UHC7 482 aaKnown RBP29.31■■■□□ 2.28
SHMT1-210ENST00000583780 CNGB1Q14028 1251 aaPredicted RBP29.3■■■□□ 2.28
SHMT1-210ENST00000583780 CLEC4GQ6UXB4 293 aa29.3■■■□□ 2.28
SHMT1-210ENST00000583780 NPM2Q86SE8 214 aaKnown RBP29.3■■■□□ 2.28
SHMT1-210ENST00000583780 KLRG2A4D1S0 409 aaPredicted RBP29.29■■■□□ 2.28
SHMT1-210ENST00000583780 SOGA3Q5TF21 947 aa29.29■■■□□ 2.28
SHMT1-210ENST00000583780 RSPH6AQ9H0K4 717 aa29.29■■■□□ 2.28
SHMT1-210ENST00000583780 PASKQ96RG2 1323 aa29.28■■■□□ 2.28
SHMT1-210ENST00000583780 NPHP1O15259 732 aa29.28■■■□□ 2.28
SHMT1-210ENST00000583780 SCN4AP35499 1836 aa29.28■■■□□ 2.28
SHMT1-210ENST00000583780 PRKAR2BP31323 418 aa29.27■■■□□ 2.28
SHMT1-210ENST00000583780 L3MBTL3Q96JM7 780 aaPredicted RBP29.27■■■□□ 2.28
SHMT1-210ENST00000583780 NBPF5PQ86XG9 351 aaPredicted RBP29.26■■■□□ 2.27
SHMT1-210ENST00000583780 TAF1DQ9H5J8 278 aaPredicted RBP29.26■■■□□ 2.27
SHMT1-210ENST00000583780 NBPF26B4DH59 902 aa29.24■■■□□ 2.27
SHMT1-210ENST00000583780 ITGBL1O95965 494 aaPredicted RBP29.24■■■□□ 2.27
SHMT1-210ENST00000583780 NPR1P16066 1061 aa29.24■■■□□ 2.27
SHMT1-210ENST00000583780 NBPF10Q6P3W6 841 aaKnown RBP29.24■■■□□ 2.27
SHMT1-210ENST00000583780 NBPF15Q8N660 670 aa29.24■■■□□ 2.27
SHMT1-210ENST00000583780 IQCA1LA6NCM1 817 aa29.23■■■□□ 2.27
SHMT1-210ENST00000583780 SNRPA1P09661 255 aaKnown RBP29.23■■■□□ 2.27
SHMT1-210ENST00000583780 CCDC93Q567U6 631 aa29.23■■■□□ 2.27
SHMT1-210ENST00000583780 OLFM4Q6UX06 510 aa29.23■■■□□ 2.27
SHMT1-210ENST00000583780 LDHDQ86WU2 507 aa29.23■■■□□ 2.27
SHMT1-210ENST00000583780 CNTNAP1P78357 1384 aa29.22■■■□□ 2.27
SHMT1-210ENST00000583780 FKBP4Q02790 459 aaKnown RBP eCLIP29.21■■■□□ 2.27
SHMT1-210ENST00000583780 TPTE2Q6XPS3 522 aa29.21■■■□□ 2.27
SHMT1-210ENST00000583780 FOXN1O15353 648 aa29.2■■■□□ 2.26
SHMT1-210ENST00000583780 MCM10Q7L590 875 aa29.2■■■□□ 2.26
SHMT1-210ENST00000583780 ZNF277Q9NRM2 450 aaPredicted RBP29.2■■■□□ 2.26
SHMT1-210ENST00000583780 ZNF541Q9H0D2 1346 aa29.2■■■□□ 2.26
SHMT1-210ENST00000583780 NIP7Q9Y221 180 aaKnown RBP eCLIP29.19■■■□□ 2.26
SHMT1-210ENST00000583780 ZNF652Q9Y2D9 606 aa29.19■■■□□ 2.26
SHMT1-210ENST00000583780 RGL2O15211 777 aa29.18■■■□□ 2.26
SHMT1-210ENST00000583780 DCTN1Q14203 1278 aa29.17■■■□□ 2.26
SHMT1-210ENST00000583780 HLFQ16534 295 aa29.17■■■□□ 2.26
SHMT1-210ENST00000583780 VEGFBP49765 207 aa29.16■■■□□ 2.26
SHMT1-210ENST00000583780 ADAMTSL1Q8N6G6 1762 aa29.16■■■□□ 2.26
SHMT1-210ENST00000583780 TMEM88BA6NKF7 163 aa29.15■■■□□ 2.26
SHMT1-210ENST00000583780 FAM177BA6PVY3 158 aa29.15■■■□□ 2.26
SHMT1-210ENST00000583780 FZD9O00144 591 aa29.15■■■□□ 2.26
SHMT1-210ENST00000583780 RTKN2Q8IZC4 609 aa29.15■■■□□ 2.26
SHMT1-210ENST00000583780 SYNE4Q8N205 404 aa29.14■■■□□ 2.26
SHMT1-210ENST00000583780 RTF1Q92541 710 aaKnown RBP29.14■■■□□ 2.26
SHMT1-210ENST00000583780 CFAP53Q96M91 514 aa29.14■■■□□ 2.26
SHMT1-210ENST00000583780 HACL1Q9UJ83 578 aa29.14■■■□□ 2.26
SHMT1-210ENST00000583780 EAPPQ56P03 285 aaPredicted RBP29.13■■■□□ 2.25
SHMT1-210ENST00000583780 PRDM10Q9NQV6 1147 aa29.13■■■□□ 2.25
SHMT1-210ENST00000583780 ALDH1B1P30837 517 aa29.12■■■□□ 2.25
SHMT1-210ENST00000583780 EPHX2P34913 555 aa29.12■■■□□ 2.25
SHMT1-210ENST00000583780 IARSP41252 1262 aaKnown RBP29.12■■■□□ 2.25
SHMT1-210ENST00000583780 NUDCQ9Y266 331 aa29.12■■■□□ 2.25
SHMT1-210ENST00000583780 SNED1Q8TER0 1413 aa29.11■■■□□ 2.25
SHMT1-210ENST00000583780 HTATSF1O43719 755 aaKnown RBP29.11■■■□□ 2.25
SHMT1-210ENST00000583780 U2AF1L5P0DN76 240 aaPredicted RBP29.11■■■□□ 2.25
SHMT1-210ENST00000583780 U2AF1Q01081 240 aaKnown RBP eCLIP29.11■■■□□ 2.25
SHMT1-210ENST00000583780 CLEC11AQ9Y240 323 aa29.11■■■□□ 2.25
SHMT1-210ENST00000583780 TAF7Q15545 349 aaPredicted RBP29.1■■■□□ 2.25
SHMT1-210ENST00000583780 WBP1LQ9NX94 342 aa29.1■■■□□ 2.25
SHMT1-210ENST00000583780 MIS18AQ9NYP9 233 aa29.1■■■□□ 2.25
SHMT1-210ENST00000583780 NUP98P52948 1817 aa29.09■■■□□ 2.25
SHMT1-210ENST00000583780 CNTROBQ8N137 903 aa29.09■■■□□ 2.25
SHMT1-210ENST00000583780 RNF123Q5XPI4 1314 aa29.09■■■□□ 2.25
SHMT1-210ENST00000583780 PPP2R1AP30153 589 aa29.08■■■□□ 2.25
SHMT1-210ENST00000583780 CRY2Q49AN0 593 aa29.08■■■□□ 2.25
SHMT1-210ENST00000583780 MAP1SQ66K74 1059 aaPredicted RBP29.08■■■□□ 2.25
SHMT1-210ENST00000583780 CTCFP49711 727 aaPredicted RBP29.07■■■□□ 2.24
SHMT1-210ENST00000583780 PNMA8AQ86V59 439 aaPredicted RBP29.07■■■□□ 2.24
SHMT1-210ENST00000583780 GPC2Q8N158 579 aa29.07■■■□□ 2.24
SHMT1-210ENST00000583780 PSMD1Q99460 953 aa29.07■■■□□ 2.24
SHMT1-210ENST00000583780 RASSF10A6NK89 507 aa29.05■■■□□ 2.24
SHMT1-210ENST00000583780 GTF2E1P29083 439 aaPredicted RBP29.05■■■□□ 2.24
SHMT1-210ENST00000583780 DEFB115Q30KQ5 88 aa29.05■■■□□ 2.24
SHMT1-210ENST00000583780 NUTM1Q86Y26 1132 aa29.05■■■□□ 2.24
SHMT1-210ENST00000583780 COL4A5P29400 1685 aa29.05■■■□□ 2.24
SHMT1-210ENST00000583780 ABCC12Q96J65 1359 aa29.03■■■□□ 2.24
SHMT1-210ENST00000583780 ERVV-1B6SEH8 477 aa29.03■■■□□ 2.24
SHMT1-210ENST00000583780 NGEFQ8N5V2 710 aa29.03■■■□□ 2.24
SHMT1-210ENST00000583780 LBX1P52954 281 aa29.02■■■□□ 2.24
SHMT1-210ENST00000583780 AIDAQ96BJ3 306 aa29.02■■■□□ 2.24
SHMT1-210ENST00000583780 LTBP1Q14766 1721 aa29.02■■■□□ 2.24
SHMT1-210ENST00000583780 DLG5Q8TDM6 1919 aa29.02■■■□□ 2.24
SHMT1-210ENST00000583780 LAMB4A4D0S4 1761 aa29.01■■■□□ 2.23
SHMT1-210ENST00000583780 HOXA10P31260 410 aaPredicted RBP29.01■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms