RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-223ENST00000583595 ATXN7L1Q9ULK2 861 aaPredicted RBP7.67□□□□□ -1.18
SS18-223ENST00000583595 A0A1W2PNR3 127 aa7.66□□□□□ -1.18
SS18-223ENST00000583595 BCRP11274 1271 aa7.66□□□□□ -1.18
SS18-223ENST00000583595 RASA1P20936 1047 aa7.66□□□□□ -1.18
SS18-223ENST00000583595 MAP2K3P46734 347 aa7.66□□□□□ -1.18
SS18-223ENST00000583595 MARSP56192 900 aaKnown RBP7.66□□□□□ -1.18
SS18-223ENST00000583595 TEAD4Q15561 434 aa7.66□□□□□ -1.18
SS18-223ENST00000583595 FIGNL1Q6PIW4 674 aa7.66□□□□□ -1.18
SS18-223ENST00000583595 NLRP8Q86W28 1048 aa7.66□□□□□ -1.18
SS18-223ENST00000583595 ZDHHC1Q8WTX9 485 aa7.66□□□□□ -1.18
SS18-223ENST00000583595 L3MBTL2Q969R5 705 aa7.66□□□□□ -1.18
SS18-223ENST00000583595 NDFIP2Q9NV92 336 aa7.66□□□□□ -1.18
SS18-223ENST00000583595 RBM19Q9Y4C8 960 aaKnown RBP7.66□□□□□ -1.18
SS18-223ENST00000583595 PCDHGC4Q9Y5F7 938 aa7.66□□□□□ -1.18
SS18-223ENST00000583595 ZNF16P17020 682 aaPredicted RBP7.65□□□□□ -1.18
SS18-223ENST00000583595 NOS2P35228 1153 aa7.65□□□□□ -1.18
SS18-223ENST00000583595 TXLNAP40222 546 aa7.65□□□□□ -1.18
SS18-223ENST00000583595 SERPINB4P48594 390 aa7.65□□□□□ -1.18
SS18-223ENST00000583595 FAM69CQ0P6D2 419 aa7.65□□□□□ -1.18
SS18-223ENST00000583595 KCNMA1Q12791 1236 aa7.65□□□□□ -1.18
SS18-223ENST00000583595 SIX5Q8N196 739 aa7.65□□□□□ -1.18
SS18-223ENST00000583595 KLRG1Q96E93 195 aa7.65□□□□□ -1.18
SS18-223ENST00000583595 ZIC5Q96T25 663 aa7.65□□□□□ -1.18
SS18-223ENST00000583595 ENAMQ9NRM1 1142 aa7.65□□□□□ -1.18
SS18-223ENST00000583595 ZNF232Q9UNY5 417 aa7.65□□□□□ -1.18
SS18-223ENST00000583595 SOWAHDA6NJG2 315 aa7.64□□□□□ -1.19
SS18-223ENST00000583595 SFI1A8K8P3 1242 aa7.64□□□□□ -1.19
SS18-223ENST00000583595 ATXN7O15265 892 aaPredicted RBP7.64□□□□□ -1.19
SS18-223ENST00000583595 FGFR3P22607 806 aa7.64□□□□□ -1.19
SS18-223ENST00000583595 CTBSQ01459 385 aa7.64□□□□□ -1.19
SS18-223ENST00000583595 BICDL1Q6ZP65 573 aa7.64□□□□□ -1.19
SS18-223ENST00000583595 OXCT2Q9BYC2 517 aaPredicted RBP7.64□□□□□ -1.19
SS18-223ENST00000583595 GJA3Q9Y6H8 435 aa7.64□□□□□ -1.19
SS18-223ENST00000583595 SERTM1A2A2V5 107 aa7.63□□□□□ -1.19
SS18-223ENST00000583595 USP17L15C9J2P7 530 aa7.63□□□□□ -1.19
SS18-223ENST00000583595 USP17L10C9JJH3 530 aa7.63□□□□□ -1.19
SS18-223ENST00000583595 USP17L13C9JLJ4 530 aa7.63□□□□□ -1.19
SS18-223ENST00000583595 USP17L12C9JPN9 530 aa7.63□□□□□ -1.19
SS18-223ENST00000583595 USP17L11C9JVI0 530 aa7.63□□□□□ -1.19
SS18-223ENST00000583595 USP17L21D6R901 530 aa7.63□□□□□ -1.19
SS18-223ENST00000583595 USP17L18D6R9N7 530 aa7.63□□□□□ -1.19
SS18-223ENST00000583595 USP17L22D6RA61 530 aa7.63□□□□□ -1.19
SS18-223ENST00000583595 USP17L17D6RBQ6 530 aa7.63□□□□□ -1.19
SS18-223ENST00000583595 USP17L19D6RCP7 530 aa7.63□□□□□ -1.19
SS18-223ENST00000583595 USP17L20D6RJB6 530 aa7.63□□□□□ -1.19
SS18-223ENST00000583595 M0R2N6 131 aa7.63□□□□□ -1.19
SS18-223ENST00000583595 C2CD2LO14523 706 aa7.63□□□□□ -1.19
SS18-223ENST00000583595 DKK1O94907 266 aa7.63□□□□□ -1.19
SS18-223ENST00000583595 BMP4P12644 408 aa7.63□□□□□ -1.19
SS18-223ENST00000583595 USP17L24Q0WX57 530 aa7.63□□□□□ -1.19
SS18-223ENST00000583595 PTK7Q13308 1070 aa7.63□□□□□ -1.19
SS18-223ENST00000583595 LARP1Q6PKG0 1096 aaKnown RBP7.63□□□□□ -1.19
SS18-223ENST00000583595 TSEN2Q8NCE0 465 aaKnown RBP7.63□□□□□ -1.19
SS18-223ENST00000583595 NEDD1Q8NHV4 660 aa7.63□□□□□ -1.19
SS18-223ENST00000583595 FAM200AQ8TCP9 573 aa7.63□□□□□ -1.19
SS18-223ENST00000583595 BCL2L13Q9BXK5 485 aa7.63□□□□□ -1.19
SS18-223ENST00000583595 TSPAN10Q9H1Z9 355 aaPredicted RBP7.63□□□□□ -1.19
SS18-223ENST00000583595 FAM196BA6NMK8 535 aa7.62□□□□□ -1.19
SS18-223ENST00000583595 RNF225M0QZC1 329 aaPredicted RBP7.62□□□□□ -1.19
SS18-223ENST00000583595 OIP5O43482 229 aa7.62□□□□□ -1.19
SS18-223ENST00000583595 ERCC3P19447 782 aa7.62□□□□□ -1.19
SS18-223ENST00000583595 GSK3AP49840 483 aa7.62□□□□□ -1.19
SS18-223ENST00000583595 SH3PXD2AQ5TCZ1 1133 aa7.62□□□□□ -1.19
SS18-223ENST00000583595 DCDC2BA2VCK2 349 aa7.61□□□□□ -1.19
SS18-223ENST00000583595 EML1O00423 815 aa7.61□□□□□ -1.19
SS18-223ENST00000583595 MAPTP10636 758 aaKnown RBP7.61□□□□□ -1.19
SS18-223ENST00000583595 PSMA6P60900 246 aaKnown RBP7.61□□□□□ -1.19
SS18-223ENST00000583595 SCARF2Q96GP6 870 aaPredicted RBP7.61□□□□□ -1.19
SS18-223ENST00000583595 LRRC4BQ9NT99 713 aa7.61□□□□□ -1.19
SS18-223ENST00000583595 BIN2Q9UBW5 565 aaPredicted RBP7.61□□□□□ -1.19
SS18-223ENST00000583595 KHNYNO15037 678 aaKnown RBP7.6□□□□□ -1.19
SS18-223ENST00000583595 IRS1P35568 1242 aa7.6□□□□□ -1.19
SS18-223ENST00000583595 SEC13P55735 322 aa7.6□□□□□ -1.19
SS18-223ENST00000583595 RASSF7Q02833 373 aa7.6□□□□□ -1.19
SS18-223ENST00000583595 TNP2Q05952 138 aa7.6□□□□□ -1.19
SS18-223ENST00000583595 LRRC69Q6ZNQ3 347 aa7.6□□□□□ -1.19
SS18-223ENST00000583595 GIPC2Q8TF65 315 aa7.6□□□□□ -1.19
SS18-223ENST00000583595 CLP1Q92989 425 aaKnown RBP7.6□□□□□ -1.19
SS18-223ENST00000583595 HCN2Q9UL51 889 aa7.6□□□□□ -1.19
SS18-223ENST00000583595 HCN4Q9Y3Q4 1203 aa7.6□□□□□ -1.19
SS18-223ENST00000583595 ANKRD33BA6NCL7 494 aa7.59□□□□□ -1.19
SS18-223ENST00000583595 PPP1R12BO60237 982 aaPredicted RBP7.59□□□□□ -1.19
SS18-223ENST00000583595 ATP2B4P23634 1241 aa7.59□□□□□ -1.19
SS18-223ENST00000583595 DPYDQ12882 1025 aa7.59□□□□□ -1.19
SS18-223ENST00000583595 ANKMY2Q8IV38 441 aa7.59□□□□□ -1.19
SS18-223ENST00000583595 TMEM151AQ8N4L1 468 aa7.59□□□□□ -1.19
SS18-223ENST00000583595 GOLGA6L1Q8N7Z2 621 aa7.59□□□□□ -1.19
SS18-223ENST00000583595 GALNT6Q8NCL4 622 aa7.59□□□□□ -1.19
SS18-223ENST00000583595 C7orf43Q8WVR3 580 aa7.59□□□□□ -1.19
SS18-223ENST00000583595 NEUROD4Q9HD90 331 aa7.59□□□□□ -1.19
SS18-223ENST00000583595 GDF2Q9UK05 429 aaPredicted RBP7.59□□□□□ -1.19
SS18-223ENST00000583595 CHMP3Q9Y3E7 222 aa7.59□□□□□ -1.19
SS18-223ENST00000583595 C21orf2O43822 256 aa7.58□□□□□ -1.2
SS18-223ENST00000583595 GDF11O95390 407 aa7.58□□□□□ -1.2
SS18-223ENST00000583595 FAM157BP0CG42 384 aa7.58□□□□□ -1.2
SS18-223ENST00000583595 CD33P20138 364 aa7.58□□□□□ -1.2
SS18-223ENST00000583595 TAGLNQ01995 201 aaKnown RBP7.58□□□□□ -1.2
SS18-223ENST00000583595 SAMD5Q5TGI4 173 aa7.58□□□□□ -1.2
SS18-223ENST00000583595 C1orf229Q6ZS94 237 aaPredicted RBP7.58□□□□□ -1.2
SS18-223ENST00000583595 RHPN1Q8TCX5 695 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms