RNA–Protein interactions for RNA: ENST00000582792.5

SS18-222, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 531 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-222ENST00000582792 CNGB1Q14028 1251 aaPredicted RBP18.2■□□□□ 0.5
SS18-222ENST00000582792 PRPF40BQ6NWY9 871 aaKnown RBP18.2■□□□□ 0.5
SS18-222ENST00000582792 DZIP3Q86Y13 1208 aaKnown RBP18.2■□□□□ 0.5
SS18-222ENST00000582792 TNS4Q8IZW8 715 aa18.2■□□□□ 0.5
SS18-222ENST00000582792 PHACTR3Q96KR7 559 aa18.2■□□□□ 0.5
SS18-222ENST00000582792 CACNA1SQ13698 1873 aa18.2■□□□□ 0.5
SS18-222ENST00000582792 HSPA1AP0DMV8 641 aaKnown RBP18.19■□□□□ 0.5
SS18-222ENST00000582792 HSPA1BP0DMV9 641 aaKnown RBP18.19■□□□□ 0.5
SS18-222ENST00000582792 PRKAR2BP31323 418 aa18.19■□□□□ 0.5
SS18-222ENST00000582792 MASTLQ96GX5 879 aa18.19■□□□□ 0.5
SS18-222ENST00000582792 RSPH6AQ9H0K4 717 aa18.19■□□□□ 0.5
SS18-222ENST00000582792 SOGA3Q5TF21 947 aa18.18■□□□□ 0.5
SS18-222ENST00000582792 USP16Q9Y5T5 823 aa18.18■□□□□ 0.5
SS18-222ENST00000582792 DDNO94850 711 aaPredicted RBP18.17■□□□□ 0.5
SS18-222ENST00000582792 CHADLQ6NUI6 762 aa18.17■□□□□ 0.5
SS18-222ENST00000582792 CLEC4GQ6UXB4 293 aa18.17■□□□□ 0.5
SS18-222ENST00000582792 PIP4K2AP48426 406 aaPredicted RBP18.16■□□□□ 0.5
SS18-222ENST00000582792 CFAP53Q96M91 514 aa18.16■□□□□ 0.5
SS18-222ENST00000582792 PRAMEF22A3QJZ6 481 aa18.15■□□□□ 0.5
SS18-222ENST00000582792 CAPN15O75808 1086 aa18.15■□□□□ 0.5
SS18-222ENST00000582792 ZEB1P37275 1124 aaPredicted RBP18.15■□□□□ 0.5
SS18-222ENST00000582792 NBPF5PQ86XG9 351 aaPredicted RBP18.15■□□□□ 0.5
SS18-222ENST00000582792 C7orf43Q8WVR3 580 aa18.15■□□□□ 0.5
SS18-222ENST00000582792 CREBZFQ9NS37 354 aa18.15■□□□□ 0.5
SS18-222ENST00000582792 ZNF652Q9Y2D9 606 aa18.15■□□□□ 0.5
SS18-222ENST00000582792 SNRPA1P09661 255 aaKnown RBP18.14■□□□□ 0.49
SS18-222ENST00000582792 POTEIP0CG38 1075 aa18.14■□□□□ 0.49
SS18-222ENST00000582792 POTEJP0CG39 1038 aa18.14■□□□□ 0.49
SS18-222ENST00000582792 KLRG2A4D1S0 409 aaPredicted RBP18.13■□□□□ 0.49
SS18-222ENST00000582792 IQCA1LA6NCM1 817 aa18.13■□□□□ 0.49
SS18-222ENST00000582792 NPR1P16066 1061 aa18.13■□□□□ 0.49
SS18-222ENST00000582792 CCDC93Q567U6 631 aa18.13■□□□□ 0.49
SS18-222ENST00000582792 L3MBTL3Q96JM7 780 aaPredicted RBP18.13■□□□□ 0.49
SS18-222ENST00000582792 NUDCQ9Y266 331 aa18.13■□□□□ 0.49
SS18-222ENST00000582792 SCN4AP35499 1836 aa18.12■□□□□ 0.49
SS18-222ENST00000582792 RGL2O15211 777 aa18.12■□□□□ 0.49
SS18-222ENST00000582792 MCM10Q7L590 875 aa18.12■□□□□ 0.49
SS18-222ENST00000582792 RTF1Q92541 710 aaKnown RBP18.12■□□□□ 0.49
SS18-222ENST00000582792 FKBP4Q02790 459 aaKnown RBP eCLIP18.11■□□□□ 0.49
SS18-222ENST00000582792 TPTE2Q6XPS3 522 aa18.11■□□□□ 0.49
SS18-222ENST00000582792 LDHDQ86WU2 507 aa18.11■□□□□ 0.49
SS18-222ENST00000582792 MKRN1Q9UHC7 482 aaKnown RBP18.11■□□□□ 0.49
SS18-222ENST00000582792 NBPF26B4DH59 902 aa18.1■□□□□ 0.49
SS18-222ENST00000582792 U2AF1L5P0DN76 240 aaPredicted RBP18.1■□□□□ 0.49
SS18-222ENST00000582792 U2AF1Q01081 240 aaKnown RBP eCLIP18.1■□□□□ 0.492e-6■■■■□ 21.7
SS18-222ENST00000582792 NBPF10Q6P3W6 841 aaKnown RBP18.1■□□□□ 0.49
SS18-222ENST00000582792 NBPF15Q8N660 670 aa18.1■□□□□ 0.49
SS18-222ENST00000582792 TAF1DQ9H5J8 278 aaPredicted RBP18.1■□□□□ 0.49
SS18-222ENST00000582792 NIP7Q9Y221 180 aaKnown RBP eCLIP18.1■□□□□ 0.49
SS18-222ENST00000582792 PASKQ96RG2 1323 aa18.09■□□□□ 0.49
SS18-222ENST00000582792 HTATSF1O43719 755 aaKnown RBP18.09■□□□□ 0.49
SS18-222ENST00000582792 CNTNAP1P78357 1384 aa18.08■□□□□ 0.49
SS18-222ENST00000582792 DCTN1Q14203 1278 aa18.08■□□□□ 0.48
SS18-222ENST00000582792 RTKN2Q8IZC4 609 aa18.08■□□□□ 0.48
SS18-222ENST00000582792 ZNF277Q9NRM2 450 aaPredicted RBP18.08■□□□□ 0.48
SS18-222ENST00000582792 ZNF541Q9H0D2 1346 aa18.07■□□□□ 0.48
SS18-222ENST00000582792 PPP2R1AP30153 589 aa18.07■□□□□ 0.48
SS18-222ENST00000582792 OLFM4Q6UX06 510 aa18.07■□□□□ 0.48
SS18-222ENST00000582792 LAMB4A4D0S4 1761 aa18.07■□□□□ 0.48
SS18-222ENST00000582792 FAM177BA6PVY3 158 aa18.06■□□□□ 0.48
SS18-222ENST00000582792 ALDH1B1P30837 517 aa18.06■□□□□ 0.48
SS18-222ENST00000582792 TAF7Q15545 349 aaPredicted RBP18.06■□□□□ 0.48
SS18-222ENST00000582792 HLFQ16534 295 aa18.06■□□□□ 0.48
SS18-222ENST00000582792 ADAMTSL1Q8N6G6 1762 aa18.05■□□□□ 0.48
SS18-222ENST00000582792 ITGBL1O95965 494 aaPredicted RBP18.05■□□□□ 0.48
SS18-222ENST00000582792 HACL1Q9UJ83 578 aa18.05■□□□□ 0.48
SS18-222ENST00000582792 TMEM88BA6NKF7 163 aa18.04■□□□□ 0.48
SS18-222ENST00000582792 IARSP41252 1262 aaKnown RBP18.04■□□□□ 0.48
SS18-222ENST00000582792 EAPPQ56P03 285 aaPredicted RBP18.04■□□□□ 0.48
SS18-222ENST00000582792 SNED1Q8TER0 1413 aa18.04■□□□□ 0.48
SS18-222ENST00000582792 FZD9O00144 591 aa18.03■□□□□ 0.48
SS18-222ENST00000582792 FOXN1O15353 648 aa18.03■□□□□ 0.48
SS18-222ENST00000582792 GTF2E1P29083 439 aaPredicted RBP18.03■□□□□ 0.48
SS18-222ENST00000582792 EPHX2P34913 555 aa18.03■□□□□ 0.48
SS18-222ENST00000582792 SYNE4Q8N205 404 aa18.03■□□□□ 0.48
SS18-222ENST00000582792 CRY2Q49AN0 593 aa18.02■□□□□ 0.48
SS18-222ENST00000582792 PSMD1Q99460 953 aa18.02■□□□□ 0.48
SS18-222ENST00000582792 NYXQ9GZU5 481 aa18.02■□□□□ 0.48
SS18-222ENST00000582792 MIS18AQ9NYP9 233 aa18.02■□□□□ 0.48
SS18-222ENST00000582792 ABCC12Q96J65 1359 aa18.02■□□□□ 0.47
SS18-222ENST00000582792 KDM3BQ7LBC6 1761 aa18.02■□□□□ 0.47
SS18-222ENST00000582792 RNF123Q5XPI4 1314 aa18.01■□□□□ 0.47
SS18-222ENST00000582792 NUP98P52948 1817 aa18.01■□□□□ 0.47
SS18-222ENST00000582792 ERVV-1B6SEH8 477 aa18.01■□□□□ 0.47
SS18-222ENST00000582792 VEGFBP49765 207 aa18.01■□□□□ 0.47
SS18-222ENST00000582792 PNMA8AQ86V59 439 aaPredicted RBP18.01■□□□□ 0.47
SS18-222ENST00000582792 GPC2Q8N158 579 aa18.01■□□□□ 0.47
SS18-222ENST00000582792 CLEC11AQ9Y240 323 aa18.01■□□□□ 0.47
SS18-222ENST00000582792 PNISRQ8TF01 805 aaKnown RBP18■□□□□ 0.47
SS18-222ENST00000582792 PRDM10Q9NQV6 1147 aa18■□□□□ 0.47
SS18-222ENST00000582792 DLG5Q8TDM6 1919 aa18■□□□□ 0.47
SS18-222ENST00000582792 MAP3K15Q6ZN16 1313 aa17.99■□□□□ 0.47
SS18-222ENST00000582792 RIC1Q4ADV7 1423 aa17.99■□□□□ 0.47
SS18-222ENST00000582792 CC2D2BQ6DHV5 1058 aa17.99■□□□□ 0.47
SS18-222ENST00000582792 NUTM1Q86Y26 1132 aa17.99■□□□□ 0.47
SS18-222ENST00000582792 NGEFQ8N5V2 710 aa17.99■□□□□ 0.47
SS18-222ENST00000582792 JDP2Q8WYK2 163 aa17.99■□□□□ 0.47
SS18-222ENST00000582792 MAP1SQ66K74 1059 aaPredicted RBP17.98■□□□□ 0.47
SS18-222ENST00000582792 CNTROBQ8N137 903 aa17.98■□□□□ 0.47
SS18-222ENST00000582792 AIDAQ96BJ3 306 aa17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms