RNA–Protein interactions for RNA: ENST00000580799.2

GGA3-210, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, human

TSL 5

Gene GGA3, Length 521 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
GGA3-210	ENST00000580799	CACNA1S	Q13698	1873 aa		13.76	□□□□□ -0.21
GGA3-210	ENST00000580799	RGL2	O15211	777 aa		13.75	□□□□□ -0.21
GGA3-210	ENST00000580799	SRGN	P10124	158 aa		13.75	□□□□□ -0.21
GGA3-210	ENST00000580799	RTF1	Q92541	710 aa	Known RBP	13.75	□□□□□ -0.21
GGA3-210	ENST00000580799	TAOK3	Q9H2K8	898 aa		13.75	□□□□□ -0.21
GGA3-210	ENST00000580799	ZNF652	Q9Y2D9	606 aa		13.75	□□□□□ -0.21
GGA3-210	ENST00000580799	SLX4	Q8IY92	1834 aa		13.74	□□□□□ -0.21
GGA3-210	ENST00000580799	SNRPA1	P09661	255 aa	Known RBP	13.74	□□□□□ -0.21
GGA3-210	ENST00000580799	PRPF40B	Q6NWY9	871 aa	Known RBP	13.74	□□□□□ -0.21
GGA3-210	ENST00000580799	CCDC24	Q8N4L8	307 aa		13.74	□□□□□ -0.21
GGA3-210	ENST00000580799	MASTL	Q96GX5	879 aa		13.74	□□□□□ -0.21
GGA3-210	ENST00000580799	ZNF219	Q9P2Y4	722 aa	Predicted RBP	13.74	□□□□□ -0.21
GGA3-210	ENST00000580799	POTEC	B2RU33	542 aa		13.73	□□□□□ -0.21
GGA3-210	ENST00000580799	KCNQ3	O43525	872 aa		13.73	□□□□□ -0.21
GGA3-210	ENST00000580799	HTATSF1	O43719	755 aa	Known RBP	13.73	□□□□□ -0.21
GGA3-210	ENST00000580799	USP16	Q9Y5T5	823 aa		13.73	□□□□□ -0.21
GGA3-210	ENST00000580799	U2AF1L5	P0DN76	240 aa	Predicted RBP	13.72	□□□□□ -0.21
GGA3-210	ENST00000580799	U2AF1	Q01081	240 aa	Known RBP eCLIP	13.72	□□□□□ -0.21
GGA3-210	ENST00000580799	NBPF5P	Q86XG9	351 aa	Predicted RBP	13.72	□□□□□ -0.21
GGA3-210	ENST00000580799	LAMB4	A4D0S4	1761 aa		13.72	□□□□□ -0.21
GGA3-210	ENST00000580799	COL13A1	Q5TAT6	717 aa	Predicted RBP	13.71	□□□□□ -0.21
GGA3-210	ENST00000580799	TPTE2	Q6XPS3	522 aa		13.71	□□□□□ -0.21
GGA3-210	ENST00000580799	SCN4A	P35499	1836 aa		13.7	□□□□□ -0.22
GGA3-210	ENST00000580799	KLRG2	A4D1S0	409 aa	Predicted RBP	13.7	□□□□□ -0.22
GGA3-210	ENST00000580799	NPR1	P16066	1061 aa		13.7	□□□□□ -0.22
GGA3-210	ENST00000580799	PPP2R1A	P30153	589 aa		13.7	□□□□□ -0.22
GGA3-210	ENST00000580799	CHADL	Q6NUI6	762 aa		13.7	□□□□□ -0.22
GGA3-210	ENST00000580799	MCM10	Q7L590	875 aa		13.7	□□□□□ -0.22
GGA3-210	ENST00000580799	PRAMEF22	A3QJZ6	481 aa		13.69	□□□□□ -0.22
GGA3-210	ENST00000580799	IQCA1L	A6NCM1	817 aa		13.69	□□□□□ -0.22
GGA3-210	ENST00000580799	PIP4K2A	P48426	406 aa	Predicted RBP	13.69	□□□□□ -0.22
GGA3-210	ENST00000580799	CCDC93	Q567U6	631 aa		13.69	□□□□□ -0.22
GGA3-210	ENST00000580799	C7orf43	Q8WVR3	580 aa		13.69	□□□□□ -0.22
GGA3-210	ENST00000580799	NBPF26	B4DH59	902 aa		13.68	□□□□□ -0.22
GGA3-210	ENST00000580799	DDN	O94850	711 aa	Predicted RBP	13.68	□□□□□ -0.22
GGA3-210	ENST00000580799	TAF7	Q15545	349 aa	Predicted RBP	13.68	□□□□□ -0.22
GGA3-210	ENST00000580799	NBPF10	Q6P3W6	841 aa	Known RBP	13.68	□□□□□ -0.22
GGA3-210	ENST00000580799	NBPF15	Q8N660	670 aa		13.68	□□□□□ -0.22
GGA3-210	ENST00000580799	L3MBTL3	Q96JM7	780 aa	Predicted RBP	13.68	□□□□□ -0.22
GGA3-210	ENST00000580799	CREBZF	Q9NS37	354 aa		13.68	□□□□□ -0.22
GGA3-210	ENST00000580799	NIP7	Q9Y221	180 aa	Known RBP eCLIP	13.68	□□□□□ -0.22
GGA3-210	ENST00000580799	NEFM	P07197	916 aa		13.67	□□□□□ -0.22
GGA3-210	ENST00000580799	ALDH1B1	P30837	517 aa		13.67	□□□□□ -0.22
GGA3-210	ENST00000580799	RTKN2	Q8IZC4	609 aa		13.67	□□□□□ -0.22
GGA3-210	ENST00000580799	TNS4	Q8IZW8	715 aa		13.67	□□□□□ -0.22
GGA3-210	ENST00000580799	KDM3B	Q7LBC6	1761 aa		13.67	□□□□□ -0.22
GGA3-210	ENST00000580799	HSPA1A	P0DMV8	641 aa	Known RBP	13.66	□□□□□ -0.22
GGA3-210	ENST00000580799	HSPA1B	P0DMV9	641 aa	Known RBP	13.66	□□□□□ -0.22
GGA3-210	ENST00000580799	FKBP4	Q02790	459 aa	Known RBP eCLIP	13.66	□□□□□ -0.22
GGA3-210	ENST00000580799	DCTN1	Q14203	1278 aa		13.66	□□□□□ -0.22
GGA3-210	ENST00000580799	LDHD	Q86WU2	507 aa		13.66	□□□□□ -0.22
GGA3-210	ENST00000580799	DLG5	Q8TDM6	1919 aa		13.66	□□□□□ -0.22
GGA3-210	ENST00000580799	GTF2E1	P29083	439 aa	Predicted RBP	13.65	□□□□□ -0.22
GGA3-210	ENST00000580799	PNISR	Q8TF01	805 aa	Known RBP	13.65	□□□□□ -0.22
GGA3-210	ENST00000580799	PCNT	O95613	3336 aa		13.65	□□□□□ -0.22
GGA3-210	ENST00000580799	ERVV-1	B6SEH8	477 aa		13.64	□□□□□ -0.23
GGA3-210	ENST00000580799	POTEI	P0CG38	1075 aa		13.64	□□□□□ -0.23
GGA3-210	ENST00000580799	POTEJ	P0CG39	1038 aa		13.64	□□□□□ -0.23
GGA3-210	ENST00000580799	NYX	Q9GZU5	481 aa		13.64	□□□□□ -0.23
GGA3-210	ENST00000580799	TAF1D	Q9H5J8	278 aa	Predicted RBP	13.64	□□□□□ -0.23
GGA3-210	ENST00000580799	RIC1	Q4ADV7	1423 aa		13.64	□□□□□ -0.23
GGA3-210	ENST00000580799	IBTK	Q9P2D0	1353 aa	Predicted RBP	13.63	□□□□□ -0.23
GGA3-210	ENST00000580799	NUP98	P52948	1817 aa		13.63	□□□□□ -0.23
GGA3-210	ENST00000580799	HLF	Q16534	295 aa		13.63	□□□□□ -0.23
GGA3-210	ENST00000580799	CRY2	Q49AN0	593 aa		13.63	□□□□□ -0.23
GGA3-210	ENST00000580799	ZNF277	Q9NRM2	450 aa	Predicted RBP	13.63	□□□□□ -0.23
GGA3-210	ENST00000580799	ADAMTSL1	Q8N6G6	1762 aa		13.63	□□□□□ -0.23
GGA3-210	ENST00000580799	PASK	Q96RG2	1323 aa		13.63	□□□□□ -0.23
GGA3-210	ENST00000580799	FAM177B	A6PVY3	158 aa		13.62	□□□□□ -0.23
GGA3-210	ENST00000580799	IARS	P41252	1262 aa	Known RBP	13.62	□□□□□ -0.23
GGA3-210	ENST00000580799	GRIPAP1	Q4V328	841 aa		13.62	□□□□□ -0.23
GGA3-210	ENST00000580799	CC2D2B	Q6DHV5	1058 aa		13.62	□□□□□ -0.23
GGA3-210	ENST00000580799	PNMA8A	Q86V59	439 aa	Predicted RBP	13.62	□□□□□ -0.23
GGA3-210	ENST00000580799	PSMD1	Q99460	953 aa		13.62	□□□□□ -0.23
GGA3-210	ENST00000580799	MIS18A	Q9NYP9	233 aa		13.62	□□□□□ -0.23
GGA3-210	ENST00000580799	HACL1	Q9UJ83	578 aa		13.62	□□□□□ -0.23
GGA3-210	ENST00000580799	MAP3K15	Q6ZN16	1313 aa		13.62	□□□□□ -0.23
GGA3-210	ENST00000580799	ZNF541	Q9H0D2	1346 aa		13.62	□□□□□ -0.23
GGA3-210	ENST00000580799	CNTNAP1	P78357	1384 aa		13.61	□□□□□ -0.23
GGA3-210	ENST00000580799	FZD9	O00144	591 aa		13.61	□□□□□ -0.23
GGA3-210	ENST00000580799	KIF6	Q6ZMV9	814 aa		13.61	□□□□□ -0.23
GGA3-210	ENST00000580799	JDP2	Q8WYK2	163 aa		13.61	□□□□□ -0.23
GGA3-210	ENST00000580799	PNN	Q9H307	717 aa	Known RBP	13.61	□□□□□ -0.23
GGA3-210	ENST00000580799	MKRN1	Q9UHC7	482 aa	Known RBP	13.61	□□□□□ -0.23
GGA3-210	ENST00000580799	SNED1	Q8TER0	1413 aa		13.61	□□□□□ -0.23
GGA3-210	ENST00000580799	ITGBL1	O95965	494 aa	Predicted RBP	13.6	□□□□□ -0.23
GGA3-210	ENST00000580799	HOXA10	P31260	410 aa	Predicted RBP	13.6	□□□□□ -0.23
GGA3-210	ENST00000580799	EPHX2	P34913	555 aa		13.6	□□□□□ -0.23
GGA3-210	ENST00000580799	EIF4A1	P60842	406 aa	Known RBP	13.6	□□□□□ -0.23
GGA3-210	ENST00000580799	NFE2L2	Q16236	605 aa		13.6	□□□□□ -0.23
GGA3-210	ENST00000580799	EAPP	Q56P03	285 aa	Predicted RBP	13.6	□□□□□ -0.23
GGA3-210	ENST00000580799	OLFM4	Q6UX06	510 aa		13.6	□□□□□ -0.23
GGA3-210	ENST00000580799	GPC2	Q8N158	579 aa		13.6	□□□□□ -0.23
GGA3-210	ENST00000580799	SYNE4	Q8N205	404 aa		13.6	□□□□□ -0.23
GGA3-210	ENST00000580799	ERBB4	Q15303	1308 aa		13.6	□□□□□ -0.23
GGA3-210	ENST00000580799	ABCC12	Q96J65	1359 aa		13.59	□□□□□ -0.23
GGA3-210	ENST00000580799	TMEM88B	A6NKF7	163 aa		13.59	□□□□□ -0.23
GGA3-210	ENST00000580799	RPGR	Q92834	1020 aa	Known RBP	13.59	□□□□□ -0.23
GGA3-210	ENST00000580799	PLEKHF1	Q96S99	279 aa		13.59	□□□□□ -0.23
GGA3-210	ENST00000580799	RRP7A	Q9Y3A4	280 aa	Known RBP	13.59	□□□□□ -0.23

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