RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 MAP3K2Q9Y2U5 619 aa19.27■□□□□ 0.68
SS18-215ENST00000580642 ERVV-1B6SEH8 477 aa19.26■□□□□ 0.67
SS18-215ENST00000580642 GNAI3P08754 354 aa19.26■□□□□ 0.67
SS18-215ENST00000580642 KIF6Q6ZMV9 814 aa19.26■□□□□ 0.67
SS18-215ENST00000580642 ZBTB1Q9Y2K1 713 aa19.26■□□□□ 0.67
SS18-215ENST00000580642 AIMP1Q12904 312 aaKnown RBP19.25■□□□□ 0.67
SS18-215ENST00000580642 HSP90AB3PQ58FF7 597 aa19.25■□□□□ 0.67
SS18-215ENST00000580642 N4BP2Q86UW6 1770 aaPredicted RBP19.24■□□□□ 0.67
SS18-215ENST00000580642 LINC00116Q8NCU8 138 aa19.24■□□□□ 0.67
SS18-215ENST00000580642 CCDC136Q96JN2 1154 aa19.24■□□□□ 0.67
SS18-215ENST00000580642 COL5A3P25940 1745 aaPredicted RBP19.24■□□□□ 0.67
SS18-215ENST00000580642 MAP3K15Q6ZN16 1313 aa19.24■□□□□ 0.67
SS18-215ENST00000580642 RPS6KA4O75676 772 aa19.23■□□□□ 0.67
SS18-215ENST00000580642 TRIM28Q13263 835 aaKnown RBP19.23■□□□□ 0.67
SS18-215ENST00000580642 ADRA2BP18089 450 aa19.22■□□□□ 0.67
SS18-215ENST00000580642 CCDC125Q86Z20 511 aa19.22■□□□□ 0.67
SS18-215ENST00000580642 APBA3O96018 575 aa19.21■□□□□ 0.67
SS18-215ENST00000580642 PIP4K2AP48426 406 aaPredicted RBP19.21■□□□□ 0.67
SS18-215ENST00000580642 TTLL7Q6ZT98 887 aa19.21■□□□□ 0.67
SS18-215ENST00000580642 RGPD3A6NKT7 1758 aaPredicted RBP19.21■□□□□ 0.67
SS18-215ENST00000580642 RGPD4Q7Z3J3 1758 aa19.21■□□□□ 0.67
SS18-215ENST00000580642 UTYO14607 1347 aa19.21■□□□□ 0.67
SS18-215ENST00000580642 TXNRD1Q16881 649 aa19.2■□□□□ 0.66
SS18-215ENST00000580642 GIGYF2Q6Y7W6 1299 aaKnown RBP19.2■□□□□ 0.66
SS18-215ENST00000580642 DZIP3Q86Y13 1208 aaKnown RBP19.2■□□□□ 0.66
SS18-215ENST00000580642 CCDC191Q8NCU4 936 aa19.2■□□□□ 0.66
SS18-215ENST00000580642 NEURL1BA8MQ27 555 aa19.19■□□□□ 0.66
SS18-215ENST00000580642 GNAI2P04899 355 aa19.19■□□□□ 0.66
SS18-215ENST00000580642 TCIRG1Q13488 830 aa19.19■□□□□ 0.66
SS18-215ENST00000580642 HDAC1Q13547 482 aaPredicted RBP19.19■□□□□ 0.66
SS18-215ENST00000580642 CLEC4GQ6UXB4 293 aa19.19■□□□□ 0.66
SS18-215ENST00000580642 RPAP2Q8IXW5 612 aaPredicted RBP19.19■□□□□ 0.66
SS18-215ENST00000580642 USP44Q9H0E7 712 aa19.19■□□□□ 0.66
SS18-215ENST00000580642 RTCBQ9Y3I0 505 aaKnown RBP19.19■□□□□ 0.66
SS18-215ENST00000580642 IGKV5-2P06315 115 aa19.18■□□□□ 0.66
SS18-215ENST00000580642 ISCA1Q9BUE6 129 aa19.18■□□□□ 0.66
SS18-215ENST00000580642 RWDD1Q9H446 243 aaPredicted RBP19.18■□□□□ 0.66
SS18-215ENST00000580642 LRRC4BQ9NT99 713 aa19.18■□□□□ 0.66
SS18-215ENST00000580642 ZNF652Q9Y2D9 606 aa19.18■□□□□ 0.66
SS18-215ENST00000580642 COL15A1P39059 1388 aa19.18■□□□□ 0.66
SS18-215ENST00000580642 UBTFL1P0CB47 393 aaPredicted RBP19.17■□□□□ 0.66
SS18-215ENST00000580642 GCKRQ14397 625 aa19.17■□□□□ 0.66
SS18-215ENST00000580642 AK7Q96M32 723 aa19.17■□□□□ 0.66
SS18-215ENST00000580642 MEIS3Q99687 375 aa19.17■□□□□ 0.66
SS18-215ENST00000580642 MYD88Q99836 296 aa19.17■□□□□ 0.66
SS18-215ENST00000580642 GRM8O00222 908 aa19.16■□□□□ 0.66
SS18-215ENST00000580642 SF3B2Q13435 895 aaKnown RBP19.16■□□□□ 0.66
SS18-215ENST00000580642 CENPQQ7L2Z9 268 aaPredicted RBP19.16■□□□□ 0.66
SS18-215ENST00000580642 PROM2Q8N271 834 aa19.16■□□□□ 0.66
SS18-215ENST00000580642 ZBTB3Q9H5J0 574 aa19.16■□□□□ 0.66
SS18-215ENST00000580642 CWC25Q9NXE8 425 aaPredicted RBP19.16■□□□□ 0.66
SS18-215ENST00000580642 C9orf78Q9NZ63 289 aaPredicted RBP19.16■□□□□ 0.66
SS18-215ENST00000580642 ZNF330Q9Y3S2 320 aaPredicted RBP19.16■□□□□ 0.66
SS18-215ENST00000580642 C4BP0C0L5 1744 aa19.15■□□□□ 0.66
SS18-215ENST00000580642 NUP188Q5SRE5 1749 aa19.15■□□□□ 0.66
SS18-215ENST00000580642 GNPATO15228 680 aa19.15■□□□□ 0.66
SS18-215ENST00000580642 SSFA2P28290 1259 aa19.15■□□□□ 0.66
SS18-215ENST00000580642 PCDHB15Q9Y5E8 787 aa19.15■□□□□ 0.66
SS18-215ENST00000580642 TNS1Q9HBL0 1735 aaKnown RBP19.14■□□□□ 0.66
SS18-215ENST00000580642 ARFGEF2Q9Y6D5 1785 aa19.14■□□□□ 0.66
SS18-215ENST00000580642 TAF1LQ8IZX4 1826 aa19.14■□□□□ 0.65
SS18-215ENST00000580642 MYH14Q7Z406 1995 aaKnown RBP19.14■□□□□ 0.65
SS18-215ENST00000580642 CAMTA2O94983 1202 aa19.14■□□□□ 0.65
SS18-215ENST00000580642 B4GALNT3Q6L9W6 998 aa19.14■□□□□ 0.65
SS18-215ENST00000580642 NARFQ9UHQ1 456 aa19.14■□□□□ 0.65
SS18-215ENST00000580642 HMMRO75330 724 aa19.13■□□□□ 0.65
SS18-215ENST00000580642 BAG6P46379 1132 aa19.13■□□□□ 0.65
SS18-215ENST00000580642 CWF19L2Q2TBE0 894 aaKnown RBP19.13■□□□□ 0.65
SS18-215ENST00000580642 PARP10Q53GL7 1025 aa19.13■□□□□ 0.65
SS18-215ENST00000580642 TRAPPC3LQ5T215 181 aa19.13■□□□□ 0.65
SS18-215ENST00000580642 ANKRD44Q8N8A2 993 aa19.13■□□□□ 0.65
SS18-215ENST00000580642 FLAD1Q8NFF5 587 aa19.13■□□□□ 0.65
SS18-215ENST00000580642 TBC1D2BQ9UPU7 963 aa19.13■□□□□ 0.65
SS18-215ENST00000580642 KDM2BQ8NHM5 1336 aa19.12■□□□□ 0.65
SS18-215ENST00000580642 H7C1W4 665 aa19.12■□□□□ 0.65
SS18-215ENST00000580642 KCNQ4P56696 695 aa19.12■□□□□ 0.65
SS18-215ENST00000580642 ZNF34Q8IZ26 560 aa19.12■□□□□ 0.65
SS18-215ENST00000580642 ARXQ96QS3 562 aa19.12■□□□□ 0.65
SS18-215ENST00000580642 MTX1Q13505 466 aa19.11■□□□□ 0.65
SS18-215ENST00000580642 CAMKK2Q96RR4 588 aa19.11■□□□□ 0.65
SS18-215ENST00000580642 ZPR1O75312 459 aa19.1■□□□□ 0.65
SS18-215ENST00000580642 NBPF7P0C2Y1 421 aaPredicted RBP19.1■□□□□ 0.65
SS18-215ENST00000580642 HSP90B1P14625 803 aaKnown RBP19.1■□□□□ 0.65
SS18-215ENST00000580642 HLFQ16534 295 aa19.1■□□□□ 0.65
SS18-215ENST00000580642 CEP85Q6P2H3 762 aa19.1■□□□□ 0.65
SS18-215ENST00000580642 EP400Q96L91 3159 aa19.09■□□□□ 0.65
SS18-215ENST00000580642 ATP5J2-PTCD1G3V325 749 aa19.09■□□□□ 0.65
SS18-215ENST00000580642 PCCAP05165 728 aaPredicted RBP19.09■□□□□ 0.65
SS18-215ENST00000580642 RFC4P35249 363 aa19.09■□□□□ 0.65
SS18-215ENST00000580642 ATP8B2P98198 1209 aa19.09■□□□□ 0.65
SS18-215ENST00000580642 NLRP10Q86W26 655 aa19.09■□□□□ 0.65
SS18-215ENST00000580642 ZBTB38Q8NAP3 1195 aaPredicted RBP19.09■□□□□ 0.65
SS18-215ENST00000580642 ARHGEF1Q92888 912 aaKnown RBP19.09■□□□□ 0.65
SS18-215ENST00000580642 AKT1S1Q96B36 256 aa19.09■□□□□ 0.65
SS18-215ENST00000580642 GCC1Q96CN9 775 aa19.09■□□□□ 0.65
SS18-215ENST00000580642 CASP7P55210 303 aa19.08■□□□□ 0.64
SS18-215ENST00000580642 CDHR2Q9BYE9 1310 aa19.07■□□□□ 0.64
SS18-215ENST00000580642 USP42Q9H9J4 1324 aaKnown RBP19.07■□□□□ 0.64
SS18-215ENST00000580642 PPP1R42Q7Z4L9 355 aa19.07■□□□□ 0.64
SS18-215ENST00000580642 SMC5Q8IY18 1101 aa19.07■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms