RNA–Protein interactions for RNA: ENST00000580569.1

RFFL-207, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 5

Gene RFFL, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-207ENST00000580569 COG6Q9Y2V7 657 aa10.09□□□□□ -0.79
RFFL-207ENST00000580569 RTL1A6NKG5 1358 aa10.09□□□□□ -0.79
RFFL-207ENST00000580569 KIF13BQ9NQT8 1826 aa10.09□□□□□ -0.79
RFFL-207ENST00000580569 N4BP2Q86UW6 1770 aaPredicted RBP10.09□□□□□ -0.79
RFFL-207ENST00000580569 WDR90Q96KV7 1748 aa10.08□□□□□ -0.8
RFFL-207ENST00000580569 VAMP4O75379 141 aa10.08□□□□□ -0.8
RFFL-207ENST00000580569 GNAI1P63096 354 aa10.08□□□□□ -0.8
RFFL-207ENST00000580569 CALD1Q05682 793 aaKnown RBP10.08□□□□□ -0.8
RFFL-207ENST00000580569 LMOD3Q0VAK6 560 aa10.08□□□□□ -0.8
RFFL-207ENST00000580569 COL23A1Q86Y22 540 aaPredicted RBP10.08□□□□□ -0.8
RFFL-207ENST00000580569 ANKRD24Q8TF21 1146 aa10.08□□□□□ -0.8
RFFL-207ENST00000580569 THUMPD2Q9BTF0 503 aaKnown RBP10.08□□□□□ -0.8
RFFL-207ENST00000580569 BCL2L13Q9BXK5 485 aa10.08□□□□□ -0.8
RFFL-207ENST00000580569 SIPA1L3O60292 1781 aaPredicted RBP10.08□□□□□ -0.8
RFFL-207ENST00000580569 NCAPD2Q15021 1401 aa10.07□□□□□ -0.8
RFFL-207ENST00000580569 ITGB4P16144 1822 aa10.07□□□□□ -0.8
RFFL-207ENST00000580569 KDM3BQ7LBC6 1761 aa10.07□□□□□ -0.8
RFFL-207ENST00000580569 KIF3CO14782 793 aa10.07□□□□□ -0.8
RFFL-207ENST00000580569 TRIM66O15016 1216 aa10.07□□□□□ -0.8
RFFL-207ENST00000580569 IGHDP01880 384 aa10.07□□□□□ -0.8
RFFL-207ENST00000580569 HMGB2P26583 209 aaKnown RBP10.07□□□□□ -0.8
RFFL-207ENST00000580569 HOXC9P31274 260 aa10.07□□□□□ -0.8
RFFL-207ENST00000580569 APLP1P51693 650 aa10.07□□□□□ -0.8
RFFL-207ENST00000580569 PDE4DQ08499 809 aa10.07□□□□□ -0.8
RFFL-207ENST00000580569 ZKSCAN2Q63HK3 967 aa10.07□□□□□ -0.8
RFFL-207ENST00000580569 DNAJC5GQ8N7S2 189 aa10.07□□□□□ -0.8
RFFL-207ENST00000580569 CLUAP1Q96AJ1 413 aa10.07□□□□□ -0.8
RFFL-207ENST00000580569 EYA1Q99502 592 aa10.07□□□□□ -0.8
RFFL-207ENST00000580569 MBIPQ9NS73 344 aa10.07□□□□□ -0.8
RFFL-207ENST00000580569 TOGARAM1Q9Y4F4 1720 aa10.07□□□□□ -0.8
RFFL-207ENST00000580569 TRIM27P14373 513 aa10.06□□□□□ -0.8
RFFL-207ENST00000580569 PRIM1P49642 420 aaKnown RBP10.06□□□□□ -0.8
RFFL-207ENST00000580569 KCNQ4P56696 695 aa10.06□□□□□ -0.8
RFFL-207ENST00000580569 MVPQ14764 893 aaKnown RBP10.06□□□□□ -0.8
RFFL-207ENST00000580569 SKAP1Q86WV1 359 aa10.06□□□□□ -0.8
RFFL-207ENST00000580569 MRPL50Q8N5N7 158 aaKnown RBP10.06□□□□□ -0.8
RFFL-207ENST00000580569 FLAD1Q8NFF5 587 aa10.06□□□□□ -0.8
RFFL-207ENST00000580569 FRAT1Q92837 279 aaPredicted RBP10.06□□□□□ -0.8
RFFL-207ENST00000580569 KIF12Q96FN5 646 aa10.06□□□□□ -0.8
RFFL-207ENST00000580569 PCDHB15Q9Y5E8 787 aa10.06□□□□□ -0.8
RFFL-207ENST00000580569 BRCA1P38398 1863 aaKnown RBP10.06□□□□□ -0.8
RFFL-207ENST00000580569 ADAMTS7Q9UKP4 1686 aa10.06□□□□□ -0.8
RFFL-207ENST00000580569 C4BP0C0L5 1744 aa10.05□□□□□ -0.8
RFFL-207ENST00000580569 CHL1O00533 1208 aa10.05□□□□□ -0.8
RFFL-207ENST00000580569 DCTN1Q14203 1278 aa10.05□□□□□ -0.8
RFFL-207ENST00000580569 ATF7IPQ6VMQ6 1270 aa10.05□□□□□ -0.8
RFFL-207ENST00000580569 DZIP1LQ8IYY4 767 aaKnown RBP10.05□□□□□ -0.8
RFFL-207ENST00000580569 TSPYL6Q8N831 410 aa10.05□□□□□ -0.8
RFFL-207ENST00000580569 DDX54Q8TDD1 881 aaKnown RBP10.05□□□□□ -0.8
RFFL-207ENST00000580569 SMC4Q9NTJ3 1288 aa10.05□□□□□ -0.8
RFFL-207ENST00000580569 CCNL1Q9UK58 526 aaPredicted RBP10.05□□□□□ -0.8
RFFL-207ENST00000580569 NOB1Q9ULX3 412 aaKnown RBP10.05□□□□□ -0.8
RFFL-207ENST00000580569 KIAA1551Q9HCM1 1747 aa10.04□□□□□ -0.8
RFFL-207ENST00000580569 AMPHP49418 695 aa10.04□□□□□ -0.8
RFFL-207ENST00000580569 MTHFSDQ2M296 383 aaKnown RBP10.04□□□□□ -0.8
RFFL-207ENST00000580569 C8orf58Q8NAV2 365 aa10.04□□□□□ -0.8
RFFL-207ENST00000580569 IP6K1Q92551 441 aa10.04□□□□□ -0.8
RFFL-207ENST00000580569 ARID3AQ99856 593 aa10.04□□□□□ -0.8
RFFL-207ENST00000580569 BACH2Q9BYV9 841 aa10.04□□□□□ -0.8
RFFL-207ENST00000580569 KIF16BQ96L93 1317 aa10.04□□□□□ -0.8
RFFL-207ENST00000580569 ARFGEF1Q9Y6D6 1849 aa10.03□□□□□ -0.8
RFFL-207ENST00000580569 TOMM70O94826 608 aa10.03□□□□□ -0.8
RFFL-207ENST00000580569 CANXP27824 592 aaKnown RBP10.03□□□□□ -0.8
RFFL-207ENST00000580569 ZNF526Q8TF50 670 aaPredicted RBP10.03□□□□□ -0.8
RFFL-207ENST00000580569 ARHGAP45Q92619 1136 aa10.03□□□□□ -0.8
RFFL-207ENST00000580569 SYTL4Q96C24 671 aaPredicted RBP10.03□□□□□ -0.8
RFFL-207ENST00000580569 SCN11AQ9UI33 1791 aa10.03□□□□□ -0.8
RFFL-207ENST00000580569 HTATSF1O43719 755 aaKnown RBP10.02□□□□□ -0.81
RFFL-207ENST00000580569 MSL1Q68DK7 614 aa10.02□□□□□ -0.81
RFFL-207ENST00000580569 LAS1LQ9Y4W2 734 aaKnown RBP10.02□□□□□ -0.81
RFFL-207ENST00000580569 IPO8O15397 1037 aaKnown RBP10.01□□□□□ -0.81
RFFL-207ENST00000580569 PRKAR2AP13861 404 aaKnown RBP10.01□□□□□ -0.81
RFFL-207ENST00000580569 MKRN3Q13064 507 aaKnown RBP10.01□□□□□ -0.81
RFFL-207ENST00000580569 TWISTNBQ3B726 338 aaPredicted RBP10.01□□□□□ -0.81
RFFL-207ENST00000580569 MCM10Q7L590 875 aa10.01□□□□□ -0.81
RFFL-207ENST00000580569 TMEM57Q8N5G2 664 aa10.01□□□□□ -0.81
RFFL-207ENST00000580569 JMYQ8N9B5 988 aa10.01□□□□□ -0.81
RFFL-207ENST00000580569 GAS2L2Q8NHY3 880 aa10.01□□□□□ -0.81
RFFL-207ENST00000580569 ZCRB1Q8TBF4 217 aaKnown RBP10.01□□□□□ -0.81
RFFL-207ENST00000580569 SBF1O95248 1867 aa10.01□□□□□ -0.81
RFFL-207ENST00000580569 MEGF6O75095 1541 aa10.01□□□□□ -0.81
RFFL-207ENST00000580569 PKD1L3Q7Z443 1732 aa10□□□□□ -0.81
RFFL-207ENST00000580569 FAM117AQ9C073 453 aa10□□□□□ -0.81
RFFL-207ENST00000580569 C1orf115Q9H7X2 142 aa10□□□□□ -0.81
RFFL-207ENST00000580569 ZBTB40Q9NUA8 1239 aa10□□□□□ -0.81
RFFL-207ENST00000580569 DDX19BQ9UMR2 479 aa10□□□□□ -0.81
RFFL-207ENST00000580569 ABCC4O15439 1325 aa10□□□□□ -0.81
RFFL-207ENST00000580569 HDAC1Q13547 482 aaPredicted RBP9.99□□□□□ -0.81
RFFL-207ENST00000580569 PPP1R15BQ5SWA1 713 aa9.99□□□□□ -0.81
RFFL-207ENST00000580569 DPYSL4O14531 572 aa9.98□□□□□ -0.81
RFFL-207ENST00000580569 ZBTB7BO15156 539 aaPredicted RBP9.98□□□□□ -0.81
RFFL-207ENST00000580569 KRT24Q2M2I5 525 aa9.98□□□□□ -0.81
RFFL-207ENST00000580569 C8orf34Q49A92 452 aa9.98□□□□□ -0.81
RFFL-207ENST00000580569 COL13A1Q5TAT6 717 aaPredicted RBP9.98□□□□□ -0.81
RFFL-207ENST00000580569 NBPF6Q5VWK0 638 aa9.98□□□□□ -0.81
RFFL-207ENST00000580569 FTSJ3Q8IY81 847 aaKnown RBP9.98□□□□□ -0.81
RFFL-207ENST00000580569 IL17REQ8NFR9 667 aa9.98□□□□□ -0.81
RFFL-207ENST00000580569 KLRG1Q96E93 195 aa9.98□□□□□ -0.81
RFFL-207ENST00000580569 NBPF4Q96M43 638 aa9.98□□□□□ -0.81
RFFL-207ENST00000580569 CEMIPQ8WUJ3 1361 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms