RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 TBC1D2BQ9UPU7 963 aa31.73■■■□□ 2.67
SHMT1-207ENST00000580002 CICQ96RK0 1608 aaPredicted RBP31.72■■■□□ 2.67
SHMT1-207ENST00000580002 IGKV5-2P06315 115 aa31.72■■■□□ 2.67
SHMT1-207ENST00000580002 IL6STP40189 918 aaPredicted RBP31.72■■■□□ 2.67
SHMT1-207ENST00000580002 CCDC136Q96JN2 1154 aa31.72■■■□□ 2.67
SHMT1-207ENST00000580002 SRCIN1Q9C0H9 1055 aa31.72■■■□□ 2.67
SHMT1-207ENST00000580002 COL5A3P25940 1745 aaPredicted RBP31.72■■■□□ 2.67
SHMT1-207ENST00000580002 METTL22Q9BUU2 404 aaPredicted RBP31.71■■■□□ 2.67
SHMT1-207ENST00000580002 ZNF831Q5JPB2 1677 aa31.71■■■□□ 2.67
SHMT1-207ENST00000580002 ATP5J2-PTCD1G3V325 749 aa31.7■■■□□ 2.67
SHMT1-207ENST00000580002 HLFQ16534 295 aa31.69■■■□□ 2.66
SHMT1-207ENST00000580002 USP44Q9H0E7 712 aa31.69■■■□□ 2.66
SHMT1-207ENST00000580002 PXDNLA1KZ92 1463 aa31.69■■■□□ 2.66
SHMT1-207ENST00000580002 TXNRD1Q16881 649 aa31.68■■■□□ 2.66
SHMT1-207ENST00000580002 CNTNAP4Q9C0A0 1308 aa31.67■■■□□ 2.66
SHMT1-207ENST00000580002 RREB1Q92766 1687 aa31.67■■■□□ 2.66
SHMT1-207ENST00000580002 ATP10DQ9P241 1426 aa31.67■■■□□ 2.66
SHMT1-207ENST00000580002 IGHDP01880 384 aa31.66■■■□□ 2.66
SHMT1-207ENST00000580002 DZIP3Q86Y13 1208 aaKnown RBP31.66■■■□□ 2.66
SHMT1-207ENST00000580002 LINS1Q8NG48 757 aa31.66■■■□□ 2.66
SHMT1-207ENST00000580002 MAP3K15Q6ZN16 1313 aa31.64■■■□□ 2.66
SHMT1-207ENST00000580002 NEURL1BA8MQ27 555 aa31.64■■■□□ 2.66
SHMT1-207ENST00000580002 PLSCR1O15162 318 aa31.64■■■□□ 2.66
SHMT1-207ENST00000580002 NBPF7P0C2Y1 421 aaPredicted RBP31.64■■■□□ 2.66
SHMT1-207ENST00000580002 RC3H1Q5TC82 1133 aaKnown RBP31.64■■■□□ 2.66
SHMT1-207ENST00000580002 KIF6Q6ZMV9 814 aa31.64■■■□□ 2.66
SHMT1-207ENST00000580002 JARID2Q92833 1246 aaPredicted RBP31.64■■■□□ 2.66
SHMT1-207ENST00000580002 ARFGEF2Q9Y6D5 1785 aa31.64■■■□□ 2.66
SHMT1-207ENST00000580002 TAF1LQ8IZX4 1826 aa31.64■■■□□ 2.65
SHMT1-207ENST00000580002 GNPATO15228 680 aa31.63■■■□□ 2.65
SHMT1-207ENST00000580002 SLC27A3Q5K4L6 730 aa31.62■■■□□ 2.65
SHMT1-207ENST00000580002 NUP188Q5SRE5 1749 aa31.62■■■□□ 2.65
SHMT1-207ENST00000580002 TNS1Q9HBL0 1735 aaKnown RBP31.62■■■□□ 2.65
SHMT1-207ENST00000580002 RPS6KA4O75676 772 aa31.61■■■□□ 2.65
SHMT1-207ENST00000580002 ALDH1L1O75891 902 aa31.61■■■□□ 2.65
SHMT1-207ENST00000580002 NEXNQ0ZGT2 675 aa31.61■■■□□ 2.65
SHMT1-207ENST00000580002 COL15A1P39059 1388 aa31.61■■■□□ 2.65
SHMT1-207ENST00000580002 SIRT2Q8IXJ6 389 aa31.6■■■□□ 2.65
SHMT1-207ENST00000580002 N4BP2Q86UW6 1770 aaPredicted RBP31.6■■■□□ 2.65
SHMT1-207ENST00000580002 CAMTA2O94983 1202 aa31.59■■■□□ 2.65
SHMT1-207ENST00000580002 EN1Q05925 392 aaPredicted RBP31.59■■■□□ 2.65
SHMT1-207ENST00000580002 AAMPQ13685 434 aa31.59■■■□□ 2.65
SHMT1-207ENST00000580002 NPM2Q86SE8 214 aaKnown RBP31.59■■■□□ 2.65
SHMT1-207ENST00000580002 C4BP0C0L5 1744 aa31.58■■■□□ 2.65
SHMT1-207ENST00000580002 TCIRG1Q13488 830 aa31.58■■■□□ 2.65
SHMT1-207ENST00000580002 GCKRQ14397 625 aa31.58■■■□□ 2.65
SHMT1-207ENST00000580002 GIGYF2Q6Y7W6 1299 aaKnown RBP31.58■■■□□ 2.65
SHMT1-207ENST00000580002 PHF14O94880 888 aa31.57■■■□□ 2.64
SHMT1-207ENST00000580002 GPTP24298 496 aa31.57■■■□□ 2.64
SHMT1-207ENST00000580002 LRRFIP2Q9Y608 721 aaKnown RBP31.57■■■□□ 2.64
SHMT1-207ENST00000580002 EZH2Q15910 746 aaKnown RBP31.56■■■□□ 2.64
SHMT1-207ENST00000580002 AK7Q96M32 723 aa31.56■■■□□ 2.64
SHMT1-207ENST00000580002 ISCA1Q9BUE6 129 aa31.56■■■□□ 2.64
SHMT1-207ENST00000580002 C9orf78Q9NZ63 289 aaPredicted RBP31.56■■■□□ 2.64
SHMT1-207ENST00000580002 CHMP4BQ9H444 224 aaKnown RBP31.56■■■□□ 2.64
SHMT1-207ENST00000580002 SRP68Q9UHB9 627 aaKnown RBP31.56■■■□□ 2.64
SHMT1-207ENST00000580002 RTCBQ9Y3I0 505 aaKnown RBP31.56■■■□□ 2.64
SHMT1-207ENST00000580002 UBTFL1P0CB47 393 aaPredicted RBP31.55■■■□□ 2.64
SHMT1-207ENST00000580002 ARHGEF1Q92888 912 aaKnown RBP31.55■■■□□ 2.64
SHMT1-207ENST00000580002 ERVV-1B6SEH8 477 aa31.54■■■□□ 2.64
SHMT1-207ENST00000580002 GNAI3P08754 354 aa31.54■■■□□ 2.64
SHMT1-207ENST00000580002 RTL5Q5HYW3 569 aaPredicted RBP31.54■■■□□ 2.64
SHMT1-207ENST00000580002 DEFB132Q7Z7B7 95 aa31.54■■■□□ 2.64
SHMT1-207ENST00000580002 KDM2BQ8NHM5 1336 aa31.54■■■□□ 2.64
SHMT1-207ENST00000580002 GRM8O00222 908 aa31.53■■■□□ 2.64
SHMT1-207ENST00000580002 GNAI2P04899 355 aa31.53■■■□□ 2.64
SHMT1-207ENST00000580002 CAMKK2Q96RR4 588 aa31.53■■■□□ 2.64
SHMT1-207ENST00000580002 ZNF827Q17R98 1081 aa31.53■■■□□ 2.64
SHMT1-207ENST00000580002 CEP85Q6P2H3 762 aa31.53■■■□□ 2.64
SHMT1-207ENST00000580002 A0A087WZG4 1122 aa31.51■■■□□ 2.64
SHMT1-207ENST00000580002 SKAP1Q86WV1 359 aa31.51■■■□□ 2.64
SHMT1-207ENST00000580002 KAZALD1Q96I82 304 aa31.51■■■□□ 2.64
SHMT1-207ENST00000580002 SUCLG2Q96I99 432 aa31.51■■■□□ 2.64
SHMT1-207ENST00000580002 BCL2L12Q9HB09 334 aa31.51■■■□□ 2.64
SHMT1-207ENST00000580002 UTYO14607 1347 aa31.5■■■□□ 2.63
SHMT1-207ENST00000580002 USPL1Q5W0Q7 1092 aa31.5■■■□□ 2.63
SHMT1-207ENST00000580002 CWC25Q9NXE8 425 aaPredicted RBP31.5■■■□□ 2.63
SHMT1-207ENST00000580002 UBN2Q6ZU65 1347 aa31.49■■■□□ 2.63
SHMT1-207ENST00000580002 UBE3BQ7Z3V4 1068 aa31.49■■■□□ 2.63
SHMT1-207ENST00000580002 SYNE4Q8N205 404 aa31.49■■■□□ 2.63
SHMT1-207ENST00000580002 NUP98P52948 1817 aa31.49■■■□□ 2.63
SHMT1-207ENST00000580002 AFDNP55196 1824 aaKnown RBP31.49■■■□□ 2.63
SHMT1-207ENST00000580002 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP31.48■■■□□ 2.63
SHMT1-207ENST00000580002 CASP7P55210 303 aa31.48■■■□□ 2.63
SHMT1-207ENST00000580002 ZNF34Q8IZ26 560 aa31.48■■■□□ 2.63
SHMT1-207ENST00000580002 ANKRD44Q8N8A2 993 aa31.48■■■□□ 2.63
SHMT1-207ENST00000580002 CCDC191Q8NCU4 936 aa31.48■■■□□ 2.63
SHMT1-207ENST00000580002 EPHA10Q5JZY3 1008 aa31.48■■■□□ 2.63
SHMT1-207ENST00000580002 TRAPPC3LQ5T215 181 aa31.48■■■□□ 2.63
SHMT1-207ENST00000580002 NLRP10Q86W26 655 aa31.48■■■□□ 2.63
SHMT1-207ENST00000580002 PNMA6EA0A0J9YXQ4 647 aa31.47■■■□□ 2.63
SHMT1-207ENST00000580002 H7C1W4 665 aa31.47■■■□□ 2.63
SHMT1-207ENST00000580002 TRIM28Q13263 835 aaKnown RBP31.47■■■□□ 2.63
SHMT1-207ENST00000580002 AKT1S1Q96B36 256 aa31.47■■■□□ 2.63
SHMT1-207ENST00000580002 NARFQ9UHQ1 456 aa31.47■■■□□ 2.63
SHMT1-207ENST00000580002 HDAC1Q13547 482 aaPredicted RBP31.46■■■□□ 2.63
SHMT1-207ENST00000580002 RWDD1Q9H446 243 aaPredicted RBP31.46■■■□□ 2.63
SHMT1-207ENST00000580002 FAM177BA6PVY3 158 aa31.45■■■□□ 2.62
SHMT1-207ENST00000580002 HSP90AB3PQ58FF7 597 aa31.44■■■□□ 2.62
SHMT1-207ENST00000580002 FAM89AQ96GI7 184 aa31.44■■■□□ 2.62
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms