RNA–Protein interactions for RNA: ENST00000579716.2

COPS3-216, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2

Gene COPS3, Length 419 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-216ENST00000579716 PLA2G4AP47712 749 aa8.93□□□□□ -0.98
COPS3-216ENST00000579716 DOLKQ9UPQ8 538 aa8.93□□□□□ -0.98
COPS3-216ENST00000579716 NEFMP07197 916 aa8.92□□□□□ -0.98
COPS3-216ENST00000579716 TRIM11Q96F44 468 aa8.92□□□□□ -0.98
COPS3-216ENST00000579716 KRTAP9-2Q9BYQ4 174 aa8.92□□□□□ -0.98
COPS3-216ENST00000579716 TMEM229AB2RXF0 380 aa8.91□□□□□ -0.98
COPS3-216ENST00000579716 MAPTP10636 758 aaKnown RBP8.91□□□□□ -0.98
COPS3-216ENST00000579716 AMPD1P23109 780 aa8.91□□□□□ -0.98
COPS3-216ENST00000579716 GDF10P55107 478 aa8.91□□□□□ -0.98
COPS3-216ENST00000579716 CHSY3Q70JA7 882 aa8.91□□□□□ -0.98
COPS3-216ENST00000579716 NLRP8Q86W28 1048 aa8.91□□□□□ -0.98
COPS3-216ENST00000579716 CNPY4Q8N129 248 aa8.91□□□□□ -0.98
COPS3-216ENST00000579716 DNAJC2Q99543 621 aaKnown RBP8.91□□□□□ -0.98
COPS3-216ENST00000579716 PRDM10Q9NQV6 1147 aa8.91□□□□□ -0.98
COPS3-216ENST00000579716 STRN4Q9NRL3 753 aa8.91□□□□□ -0.98
COPS3-216ENST00000579716 A0A1W2PNR3 127 aa8.9□□□□□ -0.98
COPS3-216ENST00000579716 PATL2C9JE40 543 aaKnown RBP8.9□□□□□ -0.98
COPS3-216ENST00000579716 CD33P20138 364 aa8.9□□□□□ -0.98
COPS3-216ENST00000579716 SMTNP53814 917 aa8.9□□□□□ -0.98
COPS3-216ENST00000579716 OXLD1Q5BKU9 147 aa8.9□□□□□ -0.98
COPS3-216ENST00000579716 FAM182BQ5T319 152 aa8.9□□□□□ -0.98
COPS3-216ENST00000579716 GPATCH11Q8N954 259 aa8.9□□□□□ -0.98
COPS3-216ENST00000579716 SLC4A9Q96Q91 983 aa8.9□□□□□ -0.98
COPS3-216ENST00000579716 MDFIQ99750 246 aa8.9□□□□□ -0.98
COPS3-216ENST00000579716 LOC102724159A0A0B4J2E5 919 aa8.89□□□□□ -0.99
COPS3-216ENST00000579716 A6NJR5 290 aa8.89□□□□□ -0.99
COPS3-216ENST00000579716 ATXN7O15265 892 aaPredicted RBP8.89□□□□□ -0.99
COPS3-216ENST00000579716 PWP2Q15269 919 aaKnown RBP8.89□□□□□ -0.99
COPS3-216ENST00000579716 TBC1D9Q6ZT07 1266 aa8.89□□□□□ -0.99
COPS3-216ENST00000579716 NOL8Q76FK4 1167 aaKnown RBP8.89□□□□□ -0.99
COPS3-216ENST00000579716 ZIC5Q96T25 663 aa8.89□□□□□ -0.99
COPS3-216ENST00000579716 DCDC2BA2VCK2 349 aa8.88□□□□□ -0.99
COPS3-216ENST00000579716 PTMAP06454 111 aaKnown RBP8.88□□□□□ -0.99
COPS3-216ENST00000579716 VAC14Q08AM6 782 aa8.88□□□□□ -0.99
COPS3-216ENST00000579716 MTFR1Q15390 333 aa8.88□□□□□ -0.99
COPS3-216ENST00000579716 FIGNL1Q6PIW4 674 aa8.88□□□□□ -0.99
COPS3-216ENST00000579716 C7orf43Q8WVR3 580 aa8.88□□□□□ -0.99
COPS3-216ENST00000579716 KRTAP9-6A0A140TA67 174 aa8.87□□□□□ -0.99
COPS3-216ENST00000579716 GTF2E1P29083 439 aaPredicted RBP8.87□□□□□ -0.99
COPS3-216ENST00000579716 DOC2BQ14184 412 aa8.87□□□□□ -0.99
COPS3-216ENST00000579716 SLFNL1Q499Z3 407 aa8.87□□□□□ -0.99
COPS3-216ENST00000579716 C1orf216Q8TAB5 229 aa8.87□□□□□ -0.99
COPS3-216ENST00000579716 AIDAQ96BJ3 306 aa8.87□□□□□ -0.99
COPS3-216ENST00000579716 RIPOR2Q9Y4F9 1068 aa8.87□□□□□ -0.99
COPS3-216ENST00000579716 PCDHGA11Q9Y5H2 935 aa8.87□□□□□ -0.99
COPS3-216ENST00000579716 PCBP4P57723 403 aaKnown RBP8.86□□□□□ -0.99
COPS3-216ENST00000579716 EIF4G2P78344 907 aaKnown RBP eCLIP8.86□□□□□ -0.99
COPS3-216ENST00000579716 COL9A3Q14050 684 aaPredicted RBP8.86□□□□□ -0.99
COPS3-216ENST00000579716 SPATA32Q96LK8 384 aa8.86□□□□□ -0.99
COPS3-216ENST00000579716 ANP32EQ9BTT0 268 aa8.86□□□□□ -0.99
COPS3-216ENST00000579716 NIFKQ9BYG3 293 aaKnown RBP8.86□□□□□ -0.99
COPS3-216ENST00000579716 SERTAD1Q9UHV2 236 aa8.86□□□□□ -0.99
COPS3-216ENST00000579716 SERPINA10Q9UK55 444 aa8.86□□□□□ -0.99
COPS3-216ENST00000579716 CDK2AP1O14519 115 aa8.85□□□□□ -0.99
COPS3-216ENST00000579716 EFSO43281 561 aa8.85□□□□□ -0.99
COPS3-216ENST00000579716 RBM10P98175 930 aaKnown RBP8.85□□□□□ -0.99
COPS3-216ENST00000579716 FOXD4L6Q3SYB3 417 aaPredicted RBP8.85□□□□□ -0.99
COPS3-216ENST00000579716 FOXD4L3Q6VB84 417 aaPredicted RBP8.85□□□□□ -0.99
COPS3-216ENST00000579716 MYH16Q9H6N6 1097 aa8.85□□□□□ -0.99
COPS3-216ENST00000579716 ADH6P28332 368 aa8.84□□□□□ -0.99
COPS3-216ENST00000579716 PLPP7Q8NBV4 271 aa8.84□□□□□ -0.99
COPS3-216ENST00000579716 RETREG2Q8NC44 543 aa8.84□□□□□ -0.99
COPS3-216ENST00000579716 ZDHHC1Q8WTX9 485 aa8.84□□□□□ -0.99
COPS3-216ENST00000579716 CCDC97Q96F63 343 aaPredicted RBP8.84□□□□□ -0.99
COPS3-216ENST00000579716 PLVAPQ9BX97 442 aa8.84□□□□□ -0.99
COPS3-216ENST00000579716 AVENQ9NQS1 362 aaPredicted RBP8.84□□□□□ -0.99
COPS3-216ENST00000579716 PARP3Q9Y6F1 533 aa8.84□□□□□ -0.99
COPS3-216ENST00000579716 A6NJY4 79 aa8.83□□□□□ -1
COPS3-216ENST00000579716 PIK3CDO00329 1044 aa8.83□□□□□ -1
COPS3-216ENST00000579716 KHNYNO15037 678 aaKnown RBP8.83□□□□□ -1
COPS3-216ENST00000579716 SMARCA5O60264 1052 aaPredicted RBP8.83□□□□□ -1
COPS3-216ENST00000579716 ZNF468Q5VIY5 522 aaPredicted RBP8.83□□□□□ -1
COPS3-216ENST00000579716 PSMG3-AS1Q96PY0 264 aa8.83□□□□□ -1
COPS3-216ENST00000579716 SEMA6BQ9H3T3 888 aa8.83□□□□□ -1
COPS3-216ENST00000579716 FAM157BP0CG42 384 aa8.82□□□□□ -1
COPS3-216ENST00000579716 TXLNAP40222 546 aa8.82□□□□□ -1
COPS3-216ENST00000579716 GDPD2Q9HCC8 539 aa8.82□□□□□ -1
COPS3-216ENST00000579716 HMGB1P1B2RPK0 211 aaPredicted RBP8.81□□□□□ -1
COPS3-216ENST00000579716 RSPO4Q2I0M5 234 aaPredicted RBP8.81□□□□□ -1
COPS3-216ENST00000579716 MAP7D1Q3KQU3 841 aa8.81□□□□□ -1
COPS3-216ENST00000579716 ARSJQ5FYB0 599 aaPredicted RBP8.81□□□□□ -1
COPS3-216ENST00000579716 SIRT1Q96EB6 747 aa8.81□□□□□ -1
COPS3-216ENST00000579716 ZDHHC3Q9NYG2 299 aa8.81□□□□□ -1
COPS3-216ENST00000579716 NKAPLQ5M9Q1 402 aa8.8□□□□□ -1
COPS3-216ENST00000579716 SAMD5Q5TGI4 173 aa8.8□□□□□ -1
COPS3-216ENST00000579716 NOP53Q9NZM5 478 aaKnown RBP8.8□□□□□ -1
COPS3-216ENST00000579716 STARD13Q9Y3M8 1113 aa8.8□□□□□ -1
COPS3-216ENST00000579716 PIK3R2O00459 728 aa8.78□□□□□ -1
COPS3-216ENST00000579716 EPHA4P54764 986 aa8.78□□□□□ -1
COPS3-216ENST00000579716 GORABQ5T7V8 394 aa8.78□□□□□ -1
COPS3-216ENST00000579716 MARK1Q9P0L2 795 aa8.78□□□□□ -1
COPS3-216ENST00000579716 WWC1Q8IX03 1113 aa8.77□□□□□ -1.01
COPS3-216ENST00000579716 CABP1Q9NZU7 370 aa8.77□□□□□ -1.01
COPS3-216ENST00000579716 SCHIP1Q9P0W5 487 aaPredicted RBP8.77□□□□□ -1.01
COPS3-216ENST00000579716 ELOA3CA0A087WX78 387 aaPredicted RBP8.76□□□□□ -1.01
COPS3-216ENST00000579716 ELOA3DA6NLF2 546 aaPredicted RBP8.76□□□□□ -1.01
COPS3-216ENST00000579716 EML1O00423 815 aa8.76□□□□□ -1.01
COPS3-216ENST00000579716 MARCH6O60337 910 aa8.76□□□□□ -1.01
COPS3-216ENST00000579716 SPATA31C1P0DKV0 1188 aa8.76□□□□□ -1.01
COPS3-216ENST00000579716 GATA4P43694 442 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms