RNA–Protein interactions for RNA: ENST00000576601.1

CIITA-211, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 4

Gene CIITA, Length 626 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-211ENST00000576601 MLLT1Q03111 559 aaPredicted RBP18.81■□□□□ 0.6
CIITA-211ENST00000576601 VSIG10Q8N0Z9 540 aa18.81■□□□□ 0.6
CIITA-211ENST00000576601 RNMTO43148 476 aaKnown RBP18.8■□□□□ 0.6
CIITA-211ENST00000576601 SRGNP10124 158 aa18.8■□□□□ 0.6
CIITA-211ENST00000576601 C7orf43Q8WVR3 580 aa18.8■□□□□ 0.6
CIITA-211ENST00000576601 COL4A5P29400 1685 aa18.79■□□□□ 0.6
CIITA-211ENST00000576601 WDR33Q9C0J8 1336 aaKnown RBP18.79■□□□□ 0.6
CIITA-211ENST00000576601 IL13P35225 146 aa18.79■□□□□ 0.6
CIITA-211ENST00000576601 STYK1Q6J9G0 422 aa18.79■□□□□ 0.6
CIITA-211ENST00000576601 SNED1Q8TER0 1413 aa18.78■□□□□ 0.6
CIITA-211ENST00000576601 DEFB115Q30KQ5 88 aa18.78■□□□□ 0.6
CIITA-211ENST00000576601 EAPPQ56P03 285 aaPredicted RBP18.78■□□□□ 0.6
CIITA-211ENST00000576601 MAP2K1Q02750 393 aaPredicted RBP18.77■□□□□ 0.6
CIITA-211ENST00000576601 MAP1SQ66K74 1059 aaPredicted RBP18.77■□□□□ 0.6
CIITA-211ENST00000576601 CNKSR1Q969H4 720 aa18.77■□□□□ 0.6
CIITA-211ENST00000576601 HACL1Q9UJ83 578 aa18.77■□□□□ 0.6
CIITA-211ENST00000576601 RNF123Q5XPI4 1314 aa18.76■□□□□ 0.59
CIITA-211ENST00000576601 EPHX2P34913 555 aa18.76■□□□□ 0.59
CIITA-211ENST00000576601 CNBD1Q8NA66 436 aa18.76■□□□□ 0.59
CIITA-211ENST00000576601 CCDC85CA6NKD9 419 aa18.75■□□□□ 0.59
CIITA-211ENST00000576601 SOGA3Q5TF21 947 aa18.75■□□□□ 0.59
CIITA-211ENST00000576601 CNTROBQ8N137 903 aa18.75■□□□□ 0.59
CIITA-211ENST00000576601 TBC1D2BQ9UPU7 963 aa18.75■□□□□ 0.59
CIITA-211ENST00000576601 KIF7Q2M1P5 1343 aa18.74■□□□□ 0.59
CIITA-211ENST00000576601 A0A087WZG4 1122 aa18.74■□□□□ 0.59
CIITA-211ENST00000576601 CAMTA2O94983 1202 aa18.74■□□□□ 0.59
CIITA-211ENST00000576601 OLFM4Q6UX06 510 aa18.74■□□□□ 0.59
CIITA-211ENST00000576601 MORC1Q86VD1 984 aa18.74■□□□□ 0.59
CIITA-211ENST00000576601 MASTLQ96GX5 879 aa18.74■□□□□ 0.59
CIITA-211ENST00000576601 MKI67P46013 3256 aaKnown RBP18.74■□□□□ 0.59
CIITA-211ENST00000576601 HEG1Q9ULI3 1381 aa18.73■□□□□ 0.59
CIITA-211ENST00000576601 FMR1Q06787 632 aaKnown RBP eCLIP18.73■□□□□ 0.59
CIITA-211ENST00000576601 CCDC93Q567U6 631 aa18.73■□□□□ 0.59
CIITA-211ENST00000576601 ZNF277Q9NRM2 450 aaPredicted RBP18.73■□□□□ 0.59
CIITA-211ENST00000576601 STARD3NLO95772 234 aa18.72■□□□□ 0.59
CIITA-211ENST00000576601 FKBP4Q02790 459 aaKnown RBP eCLIP18.72■□□□□ 0.59
CIITA-211ENST00000576601 ZNF496Q96IT1 587 aaPredicted RBP18.72■□□□□ 0.59
CIITA-211ENST00000576601 ABT1Q9ULW3 272 aaKnown RBP18.72■□□□□ 0.59
CIITA-211ENST00000576601 CLEC11AQ9Y240 323 aa18.72■□□□□ 0.59
CIITA-211ENST00000576601 FZD9O00144 591 aa18.71■□□□□ 0.59
CIITA-211ENST00000576601 MTHFSDQ2M296 383 aaKnown RBP18.71■□□□□ 0.59
CIITA-211ENST00000576601 AMER1Q5JTC6 1135 aaPredicted RBP18.71■□□□□ 0.59
CIITA-211ENST00000576601 CAPNS2Q96L46 248 aa18.71■□□□□ 0.59
CIITA-211ENST00000576601 DDX21Q9NR30 783 aaKnown RBP eCLIP18.71■□□□□ 0.59
CIITA-211ENST00000576601 IL6STP40189 918 aaPredicted RBP18.7■□□□□ 0.58
CIITA-211ENST00000576601 PNMA8AQ86V59 439 aaPredicted RBP18.7■□□□□ 0.58
CIITA-211ENST00000576601 TSKSQ9UJT2 592 aa18.7■□□□□ 0.58
CIITA-211ENST00000576601 ST5P78524 1137 aa18.69■□□□□ 0.58
CIITA-211ENST00000576601 SETDB2Q96T68 719 aa18.69■□□□□ 0.58
CIITA-211ENST00000576601 ZNF330Q9Y3S2 320 aaPredicted RBP18.69■□□□□ 0.58
CIITA-211ENST00000576601 KNSTRNQ9Y448 316 aa18.69■□□□□ 0.58
CIITA-211ENST00000576601 KLRG2A4D1S0 409 aaPredicted RBP18.68■□□□□ 0.58
CIITA-211ENST00000576601 HMOX1P09601 288 aa18.68■□□□□ 0.58
CIITA-211ENST00000576601 CYP4F22Q6NT55 531 aa18.68■□□□□ 0.58
CIITA-211ENST00000576601 COL3A1P02461 1466 aaPredicted RBP18.67■□□□□ 0.58
CIITA-211ENST00000576601 GPC2Q8N158 579 aa18.67■□□□□ 0.58
CIITA-211ENST00000576601 NUP98P52948 1817 aa18.67■□□□□ 0.58
CIITA-211ENST00000576601 A1BGP04217 495 aa18.66■□□□□ 0.58
CIITA-211ENST00000576601 NPR1P16066 1061 aa18.66■□□□□ 0.58
CIITA-211ENST00000576601 IARSP41252 1262 aaKnown RBP18.66■□□□□ 0.58
CIITA-211ENST00000576601 CST9Q5W186 159 aa18.66■□□□□ 0.58
CIITA-211ENST00000576601 GPR101Q96P66 508 aaPredicted RBP18.66■□□□□ 0.58
CIITA-211ENST00000576601 MCOLN1Q9GZU1 580 aa18.66■□□□□ 0.58
CIITA-211ENST00000576601 CENPFP49454 3210 aa18.65■□□□□ 0.58
CIITA-211ENST00000576601 ZNF790Q6PG37 636 aa18.65■□□□□ 0.58
CIITA-211ENST00000576601 TTC5Q8N0Z6 440 aa18.65■□□□□ 0.58
CIITA-211ENST00000576601 HTTP42858 3142 aa18.65■□□□□ 0.58
CIITA-211ENST00000576601 LAMB4A4D0S4 1761 aa18.64■□□□□ 0.57
CIITA-211ENST00000576601 TRAF5O00463 557 aa18.64■□□□□ 0.57
CIITA-211ENST00000576601 NPHP1O15259 732 aa18.64■□□□□ 0.57
CIITA-211ENST00000576601 AOC2O75106 756 aa18.64■□□□□ 0.57
CIITA-211ENST00000576601 SCNN1DP51172 638 aa18.64■□□□□ 0.57
CIITA-211ENST00000576601 ECE1P42892 770 aa18.63■□□□□ 0.57
CIITA-211ENST00000576601 GRM1Q13255 1194 aa18.63■□□□□ 0.57
CIITA-211ENST00000576601 DZIP3Q86Y13 1208 aaKnown RBP18.63■□□□□ 0.57
CIITA-211ENST00000576601 TLL2Q9Y6L7 1015 aa18.63■□□□□ 0.57
CIITA-211ENST00000576601 CC2D1BQ5T0F9 858 aaKnown RBP18.62■□□□□ 0.57
CIITA-211ENST00000576601 PAXIP1Q6ZW49 1069 aaPredicted RBP18.62■□□□□ 0.57
CIITA-211ENST00000576601 NBPF5PQ86XG9 351 aaPredicted RBP18.62■□□□□ 0.57
CIITA-211ENST00000576601 RTKN2Q8IZC4 609 aa18.62■□□□□ 0.57
CIITA-211ENST00000576601 IL17REQ8NFR9 667 aa18.62■□□□□ 0.57
CIITA-211ENST00000576601 BEGAINQ9BUH8 593 aa18.62■□□□□ 0.57
CIITA-211ENST00000576601 TEX13AQ9BXU3 409 aaPredicted RBP18.62■□□□□ 0.57
CIITA-211ENST00000576601 PER1O15534 1290 aaPredicted RBP18.61■□□□□ 0.57
CIITA-211ENST00000576601 PIP4K2AP48426 406 aaPredicted RBP18.61■□□□□ 0.57
CIITA-211ENST00000576601 SLC51AQ86UW1 340 aa18.61■□□□□ 0.57
CIITA-211ENST00000576601 SYNE4Q8N205 404 aa18.61■□□□□ 0.57
CIITA-211ENST00000576601 POLR2AP24928 1970 aaKnown RBP18.61■□□□□ 0.57
CIITA-211ENST00000576601 BRCA2P51587 3418 aa18.6■□□□□ 0.57
CIITA-211ENST00000576601 CEMIPQ8WUJ3 1361 aa18.6■□□□□ 0.57
CIITA-211ENST00000576601 EPS15P42566 896 aa18.6■□□□□ 0.57
CIITA-211ENST00000576601 PSMD1Q99460 953 aa18.6■□□□□ 0.57
CIITA-211ENST00000576601 AKAP11Q9UKA4 1901 aa18.6■□□□□ 0.57
CIITA-211ENST00000576601 ABCC12Q96J65 1359 aa18.59■□□□□ 0.57
CIITA-211ENST00000576601 KCNQ3O43525 872 aa18.59■□□□□ 0.57
CIITA-211ENST00000576601 MAP2K2P36507 400 aa18.59■□□□□ 0.57
CIITA-211ENST00000576601 CNGB1Q14028 1251 aaPredicted RBP18.58■□□□□ 0.56
CIITA-211ENST00000576601 CLEC4GQ6UXB4 293 aa18.58■□□□□ 0.56
CIITA-211ENST00000576601 SAPCD2Q86UD0 394 aa18.58■□□□□ 0.56
CIITA-211ENST00000576601 CFAP44Q96MT7 982 aa18.58■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms