RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 MAP3K15Q6ZN16 1313 aa21.84■■□□□ 1.09
NUP88-210ENST00000574867 SLC16A10Q8TF71 515 aa21.83■■□□□ 1.09
NUP88-210ENST00000574867 ARFGEF2Q9Y6D5 1785 aa21.83■■□□□ 1.09
NUP88-210ENST00000574867 KIF16BQ96L93 1317 aa21.83■■□□□ 1.09
NUP88-210ENST00000574867 ERVV-1B6SEH8 477 aa21.83■■□□□ 1.08
NUP88-210ENST00000574867 CAMTA2O94983 1202 aa21.83■■□□□ 1.08
NUP88-210ENST00000574867 PSDA5PKW4 1024 aaPredicted RBP21.82■■□□□ 1.08
NUP88-210ENST00000574867 G2E3Q7L622 706 aa21.82■■□□□ 1.08
NUP88-210ENST00000574867 RCAN3Q9UKA8 241 aa21.82■■□□□ 1.08
NUP88-210ENST00000574867 ZNF652Q9Y2D9 606 aa21.82■■□□□ 1.08
NUP88-210ENST00000574867 PLBD2Q8NHP8 589 aa21.81■■□□□ 1.08
NUP88-210ENST00000574867 SRP68Q9UHB9 627 aaKnown RBP21.81■■□□□ 1.08
NUP88-210ENST00000574867 PTPRCP08575 1304 aa21.81■■□□□ 1.08
NUP88-210ENST00000574867 NUP98P52948 1817 aa21.81■■□□□ 1.08
NUP88-210ENST00000574867 USPL1Q5W0Q7 1092 aa21.81■■□□□ 1.08
NUP88-210ENST00000574867 ANKRD13DQ6ZTN6 518 aa21.81■■□□□ 1.08
NUP88-210ENST00000574867 FKBP5Q13451 457 aaPredicted RBP21.8■■□□□ 1.08
NUP88-210ENST00000574867 CLEC4GQ6UXB4 293 aa21.8■■□□□ 1.08
NUP88-210ENST00000574867 ZBTB3Q9H5J0 574 aa21.8■■□□□ 1.08
NUP88-210ENST00000574867 ANKRD36CQ5JPF3 1778 aa21.8■■□□□ 1.08
NUP88-210ENST00000574867 GYS1P13807 737 aa21.79■■□□□ 1.08
NUP88-210ENST00000574867 BCAR3O75815 825 aa21.78■■□□□ 1.08
NUP88-210ENST00000574867 KSR2Q6VAB6 950 aa21.78■■□□□ 1.08
NUP88-210ENST00000574867 PDGFDQ9GZP0 370 aaPredicted RBP21.78■■□□□ 1.08
NUP88-210ENST00000574867 ATP10DQ9P241 1426 aa21.78■■□□□ 1.08
NUP88-210ENST00000574867 COL24A1Q17RW2 1714 aa21.78■■□□□ 1.08
NUP88-210ENST00000574867 GIGYF2Q6Y7W6 1299 aaKnown RBP21.78■■□□□ 1.08
NUP88-210ENST00000574867 RIC3Q7Z5B4 369 aa21.78■■□□□ 1.08
NUP88-210ENST00000574867 NLGN1Q8N2Q7 840 aa21.78■■□□□ 1.08
NUP88-210ENST00000574867 BCL2L12Q9HB09 334 aa21.78■■□□□ 1.08
NUP88-210ENST00000574867 ADCY9O60503 1353 aa21.77■■□□□ 1.08
NUP88-210ENST00000574867 HSP90AB3PQ58FF7 597 aa21.76■■□□□ 1.07
NUP88-210ENST00000574867 MTFR1LQ9H019 292 aa21.76■■□□□ 1.07
NUP88-210ENST00000574867 PI4KAP2A4QPH2 592 aa21.76■■□□□ 1.07
NUP88-210ENST00000574867 PI4KAP1Q8N8J0 262 aa21.76■■□□□ 1.07
NUP88-210ENST00000574867 ARHGAP45Q92619 1136 aa21.76■■□□□ 1.07
NUP88-210ENST00000574867 IPO8O15397 1037 aaKnown RBP21.75■■□□□ 1.07
NUP88-210ENST00000574867 FKBP8Q14318 412 aa21.75■■□□□ 1.07
NUP88-210ENST00000574867 HLFQ16534 295 aa21.75■■□□□ 1.07
NUP88-210ENST00000574867 NOB1Q9ULX3 412 aaKnown RBP21.75■■□□□ 1.07
NUP88-210ENST00000574867 MAP3K2Q9Y2U5 619 aa21.75■■□□□ 1.07
NUP88-210ENST00000574867 PXDNLA1KZ92 1463 aa21.74■■□□□ 1.07
NUP88-210ENST00000574867 API5Q9BZZ5 524 aaKnown RBP21.74■■□□□ 1.07
NUP88-210ENST00000574867 DNAAF4Q8WXU2 420 aa21.73■■□□□ 1.07
NUP88-210ENST00000574867 N4BP2Q86UW6 1770 aaPredicted RBP21.73■■□□□ 1.07
NUP88-210ENST00000574867 FRAT1Q92837 279 aaPredicted RBP21.73■■□□□ 1.07
NUP88-210ENST00000574867 METTL22Q9BUU2 404 aaPredicted RBP21.73■■□□□ 1.07
NUP88-210ENST00000574867 ZBTB7AO95365 584 aa21.72■■□□□ 1.07
NUP88-210ENST00000574867 NEXNQ0ZGT2 675 aa21.72■■□□□ 1.07
NUP88-210ENST00000574867 TCIRG1Q13488 830 aa21.72■■□□□ 1.07
NUP88-210ENST00000574867 MSL1Q68DK7 614 aa21.72■■□□□ 1.07
NUP88-210ENST00000574867 ZKSCAN2Q63HK3 967 aa21.71■■□□□ 1.07
NUP88-210ENST00000574867 TBC1D9BQ66K14 1250 aa21.71■■□□□ 1.07
NUP88-210ENST00000574867 CARMIL3Q8ND23 1372 aa21.71■■□□□ 1.07
NUP88-210ENST00000574867 ATF7IPQ6VMQ6 1270 aa21.71■■□□□ 1.07
NUP88-210ENST00000574867 NFIXQ14938 502 aa21.7■■□□□ 1.06
NUP88-210ENST00000574867 ZNF34Q8IZ26 560 aa21.7■■□□□ 1.06
NUP88-210ENST00000574867 NIP7Q9Y221 180 aaKnown RBP eCLIP21.7■■□□□ 1.06
NUP88-210ENST00000574867 AFDNP55196 1824 aaKnown RBP21.7■■□□□ 1.06
NUP88-210ENST00000574867 F6X3S4 739 aa21.7■■□□□ 1.06
NUP88-210ENST00000574867 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.7■■□□□ 1.06
NUP88-210ENST00000574867 SETDB2Q96T68 719 aa21.7■■□□□ 1.06
NUP88-210ENST00000574867 MYD88Q99836 296 aa21.7■■□□□ 1.06
NUP88-210ENST00000574867 IBTKQ9P2D0 1353 aaPredicted RBP21.69■■□□□ 1.06
NUP88-210ENST00000574867 TM4SF1P30408 202 aa21.69■■□□□ 1.06
NUP88-210ENST00000574867 PARP10Q53GL7 1025 aa21.69■■□□□ 1.06
NUP88-210ENST00000574867 MMP10P09238 476 aa21.68■■□□□ 1.06
NUP88-210ENST00000574867 TRIM27P14373 513 aa21.68■■□□□ 1.06
NUP88-210ENST00000574867 TRIM28Q13263 835 aaKnown RBP21.68■■□□□ 1.06
NUP88-210ENST00000574867 BICDL1Q6ZP65 573 aa21.68■■□□□ 1.06
NUP88-210ENST00000574867 ISCA1Q9BUE6 129 aa21.68■■□□□ 1.06
NUP88-210ENST00000574867 POLD1P28340 1107 aa21.68■■□□□ 1.06
NUP88-210ENST00000574867 LINS1Q8NG48 757 aa21.68■■□□□ 1.06
NUP88-210ENST00000574867 NRXN2Q9P2S2 1712 aa21.68■■□□□ 1.06
NUP88-210ENST00000574867 UBN2Q6ZU65 1347 aa21.68■■□□□ 1.06
NUP88-210ENST00000574867 GPTP24298 496 aa21.67■■□□□ 1.06
NUP88-210ENST00000574867 SPON1Q9HCB6 807 aa21.67■■□□□ 1.06
NUP88-210ENST00000574867 ABCC4O15439 1325 aa21.67■■□□□ 1.06
NUP88-210ENST00000574867 SLC4A10Q6U841 1118 aa21.67■■□□□ 1.06
NUP88-210ENST00000574867 ATF5Q9Y2D1 282 aaPredicted RBP21.67■■□□□ 1.06
NUP88-210ENST00000574867 PARP3Q9Y6F1 533 aa21.67■■□□□ 1.06
NUP88-210ENST00000574867 POLRMTO00411 1230 aaKnown RBP21.66■■□□□ 1.06
NUP88-210ENST00000574867 DDR1Q08345 913 aa21.66■■□□□ 1.06
NUP88-210ENST00000574867 NLRP10Q86W26 655 aa21.66■■□□□ 1.06
NUP88-210ENST00000574867 CCDC191Q8NCU4 936 aa21.66■■□□□ 1.06
NUP88-210ENST00000574867 ATP5J2-PTCD1G3V325 749 aa21.65■■□□□ 1.06
NUP88-210ENST00000574867 CENPBP07199 599 aaPredicted RBP21.65■■□□□ 1.06
NUP88-210ENST00000574867 MS4A1P11836 297 aa21.65■■□□□ 1.06
NUP88-210ENST00000574867 BEND3Q5T5X7 828 aa21.65■■□□□ 1.06
NUP88-210ENST00000574867 RNF123Q5XPI4 1314 aa21.65■■□□□ 1.06
NUP88-210ENST00000574867 IGKV5-2P06315 115 aa21.65■■□□□ 1.06
NUP88-210ENST00000574867 PPP1R42Q7Z4L9 355 aa21.65■■□□□ 1.06
NUP88-210ENST00000574867 NEURL1BA8MQ27 555 aa21.64■■□□□ 1.05
NUP88-210ENST00000574867 CCT4P50991 539 aaKnown RBP21.64■■□□□ 1.05
NUP88-210ENST00000574867 FTSJ3Q8IY81 847 aaKnown RBP21.64■■□□□ 1.05
NUP88-210ENST00000574867 SGIP1Q9BQI5 828 aa21.64■■□□□ 1.05
NUP88-210ENST00000574867 SRCIN1Q9C0H9 1055 aa21.64■■□□□ 1.05
NUP88-210ENST00000574867 NYXQ9GZU5 481 aa21.64■■□□□ 1.05
NUP88-210ENST00000574867 CWC25Q9NXE8 425 aaPredicted RBP21.64■■□□□ 1.05
NUP88-210ENST00000574867 ALDH1L1O75891 902 aa21.64■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms