RNA–Protein interactions for RNA: ENST00000573584.5

NUP88-207, Transcript of nucleoporin 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP88, Length 2,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-207ENST00000573584 KCNQ3O43525 872 aa18.77■□□□□ 0.6
NUP88-207ENST00000573584 SASS6Q6UVJ0 657 aa18.77■□□□□ 0.6
NUP88-207ENST00000573584 LARGE1O95461 756 aa18.77■□□□□ 0.59
NUP88-207ENST00000573584 HCLS1P14317 486 aaPredicted RBP18.76■□□□□ 0.59
NUP88-207ENST00000573584 PTH1RQ03431 593 aa18.76■□□□□ 0.59
NUP88-207ENST00000573584 CCDC83Q8IWF9 413 aa18.76■□□□□ 0.59
NUP88-207ENST00000573584 TCHHQ07283 1943 aa18.76■□□□□ 0.59
NUP88-207ENST00000573584 PRPF40BQ6NWY9 871 aaKnown RBP18.76■□□□□ 0.59
NUP88-207ENST00000573584 JAKMIP1Q96N16 626 aaKnown RBP18.76■□□□□ 0.59
NUP88-207ENST00000573584 PDRG1Q9NUG6 133 aa18.76■□□□□ 0.59
NUP88-207ENST00000573584 GJB2P29033 226 aa18.75■□□□□ 0.59
NUP88-207ENST00000573584 NBPF6Q5VWK0 638 aa18.75■□□□□ 0.59
NUP88-207ENST00000573584 NBPF4Q96M43 638 aa18.75■□□□□ 0.59
NUP88-207ENST00000573584 ADCY5O95622 1261 aa18.75■□□□□ 0.59
NUP88-207ENST00000573584 ADCK5Q3MIX3 580 aa18.75■□□□□ 0.59
NUP88-207ENST00000573584 ZNF830Q96NB3 372 aaPredicted RBP18.75■□□□□ 0.59
NUP88-207ENST00000573584 ECHDC1Q9NTX5 307 aa18.75■□□□□ 0.59
NUP88-207ENST00000573584 DYNC1I1O14576 645 aa18.74■□□□□ 0.59
NUP88-207ENST00000573584 VPS53Q5VIR6 699 aa18.74■□□□□ 0.59
NUP88-207ENST00000573584 ANKARQ7Z5J8 1434 aa18.74■□□□□ 0.59
NUP88-207ENST00000573584 DTNBO60941 627 aa18.74■□□□□ 0.59
NUP88-207ENST00000573584 TEFQ10587 303 aa18.74■□□□□ 0.59
NUP88-207ENST00000573584 MAP7D2Q96T17 732 aa18.74■□□□□ 0.59
NUP88-207ENST00000573584 C9orf78Q9NZ63 289 aaPredicted RBP18.74■□□□□ 0.59
NUP88-207ENST00000573584 CYP46A1Q9Y6A2 500 aa18.74■□□□□ 0.59
NUP88-207ENST00000573584 ADCY9O60503 1353 aa18.74■□□□□ 0.59
NUP88-207ENST00000573584 BTBD11A6QL63 1104 aa18.73■□□□□ 0.59
NUP88-207ENST00000573584 IFIT2P09913 472 aaKnown RBP18.73■□□□□ 0.59
NUP88-207ENST00000573584 MTX1Q13505 466 aa18.73■□□□□ 0.59
NUP88-207ENST00000573584 IP6K1Q92551 441 aa18.73■□□□□ 0.59
NUP88-207ENST00000573584 ZMYND15Q9H091 742 aa18.73■□□□□ 0.59
NUP88-207ENST00000573584 KCNA6P17658 529 aa18.73■□□□□ 0.59
NUP88-207ENST00000573584 DNM1Q05193 864 aaKnown RBP18.73■□□□□ 0.59
NUP88-207ENST00000573584 GPATCH3Q96I76 525 aa18.73■□□□□ 0.59
NUP88-207ENST00000573584 ZSCAN31Q96LW9 406 aaPredicted RBP18.73■□□□□ 0.59
NUP88-207ENST00000573584 MTMR6Q9Y217 621 aa18.73■□□□□ 0.59
NUP88-207ENST00000573584 DNTTIP2Q5QJE6 756 aaKnown RBP18.73■□□□□ 0.59
NUP88-207ENST00000573584 ZSWIM6Q9HCJ5 1215 aa18.73■□□□□ 0.59
NUP88-207ENST00000573584 SH2B1Q9NRF2 756 aaPredicted RBP18.73■□□□□ 0.59
NUP88-207ENST00000573584 GIMAP6Q6P9H5 292 aa18.72■□□□□ 0.59
NUP88-207ENST00000573584 TM6SF1Q9BZW5 370 aa18.72■□□□□ 0.59
NUP88-207ENST00000573584 DBF4Q9UBU7 674 aaPredicted RBP18.72■□□□□ 0.59
NUP88-207ENST00000573584 ZBTB7CA1YPR0 619 aa18.72■□□□□ 0.59
NUP88-207ENST00000573584 PA2G4Q9UQ80 394 aaKnown RBP18.72■□□□□ 0.59
NUP88-207ENST00000573584 MAP3K2Q9Y2U5 619 aa18.71■□□□□ 0.59
NUP88-207ENST00000573584 SLIT1O75093 1534 aa18.71■□□□□ 0.59
NUP88-207ENST00000573584 KDM4AO75164 1064 aa18.71■□□□□ 0.59
NUP88-207ENST00000573584 ZKSCAN1P17029 563 aaPredicted RBP18.71■□□□□ 0.59
NUP88-207ENST00000573584 MPRIPQ6WCQ1 1025 aa18.71■□□□□ 0.59
NUP88-207ENST00000573584 ERC1Q8IUD2 1116 aa18.71■□□□□ 0.59
NUP88-207ENST00000573584 DDX54Q8TDD1 881 aaKnown RBP18.71■□□□□ 0.59
NUP88-207ENST00000573584 PIBF1Q8WXW3 757 aa18.71■□□□□ 0.59
NUP88-207ENST00000573584 EVI5LQ96CN4 794 aa18.71■□□□□ 0.59
NUP88-207ENST00000573584 TTC12Q9H892 705 aaPredicted RBP18.71■□□□□ 0.59
NUP88-207ENST00000573584 ARHGAP23Q9P227 1491 aa18.71■□□□□ 0.59
NUP88-207ENST00000573584 THEMISQ8N1K5 641 aaPredicted RBP18.7■□□□□ 0.58
NUP88-207ENST00000573584 KCNB2Q92953 911 aa18.7■□□□□ 0.58
NUP88-207ENST00000573584 VPS37CA5D8V6 355 aaPredicted RBP18.7■□□□□ 0.58
NUP88-207ENST00000573584 NECTIN1Q15223 517 aa18.7■□□□□ 0.58
NUP88-207ENST00000573584 ZNF530Q6P9A1 599 aaPredicted RBP18.7■□□□□ 0.58
NUP88-207ENST00000573584 PLCB2Q00722 1185 aa18.7■□□□□ 0.58
NUP88-207ENST00000573584 NOLC1Q14978 699 aaKnown RBP eCLIP18.7■□□□□ 0.58
NUP88-207ENST00000573584 ME3Q16798 604 aa18.7■□□□□ 0.58
NUP88-207ENST00000573584 AACSQ86V21 672 aa18.7■□□□□ 0.58
NUP88-207ENST00000573584 MARF1Q9Y4F3 1742 aaKnown RBP18.69■□□□□ 0.58
NUP88-207ENST00000573584 ALDH1L1O75891 902 aa18.69■□□□□ 0.58
NUP88-207ENST00000573584 KCNJ4P48050 445 aa18.69■□□□□ 0.58
NUP88-207ENST00000573584 AKAP4Q5JQC9 854 aa18.69■□□□□ 0.58
NUP88-207ENST00000573584 NECAB1Q8N987 351 aa18.69■□□□□ 0.58
NUP88-207ENST00000573584 FUCA2Q9BTY2 467 aa18.69■□□□□ 0.58
NUP88-207ENST00000573584 CCDC171Q6TFL3 1326 aa18.69■□□□□ 0.58
NUP88-207ENST00000573584 HDAC5Q9UQL6 1122 aa18.68■□□□□ 0.58
NUP88-207ENST00000573584 ST3GAL1Q11201 340 aa18.68■□□□□ 0.58
NUP88-207ENST00000573584 CWF19L2Q2TBE0 894 aaKnown RBP18.68■□□□□ 0.58
NUP88-207ENST00000573584 KSR2Q6VAB6 950 aa18.68■□□□□ 0.58
NUP88-207ENST00000573584 KLHL34Q8N239 644 aa18.68■□□□□ 0.58
NUP88-207ENST00000573584 PHF8Q9UPP1 1060 aa18.68■□□□□ 0.58
NUP88-207ENST00000573584 RBM8AQ9Y5S9 174 aaKnown RBP18.68■□□□□ 0.58
NUP88-207ENST00000573584 PROSER3Q2NL68 480 aa18.67■□□□□ 0.58
NUP88-207ENST00000573584 CREB3L3Q68CJ9 461 aa18.67■□□□□ 0.58
NUP88-207ENST00000573584 CRYBG1Q9Y4K1 1723 aa18.67■□□□□ 0.58
NUP88-207ENST00000573584 MED1Q15648 1581 aaPredicted RBP18.67■□□□□ 0.58
NUP88-207ENST00000573584 PLEKHO1Q53GL0 409 aaPredicted RBP18.67■□□□□ 0.58
NUP88-207ENST00000573584 TPCN1Q9ULQ1 816 aa18.67■□□□□ 0.58
NUP88-207ENST00000573584 LARP1BQ659C4 914 aaKnown RBP18.67■□□□□ 0.58
NUP88-207ENST00000573584 MTERF4Q7Z6M4 381 aaKnown RBP18.67■□□□□ 0.58
NUP88-207ENST00000573584 LRRC59Q96AG4 307 aaKnown RBP18.67■□□□□ 0.58
NUP88-207ENST00000573584 FAM227BQ96M60 508 aa18.67■□□□□ 0.58
NUP88-207ENST00000573584 MAP4K1Q92918 833 aa18.66■□□□□ 0.58
NUP88-207ENST00000573584 C17orf53Q8N3J3 647 aaPredicted RBP18.66■□□□□ 0.58
NUP88-207ENST00000573584 GIGYF1O75420 1035 aaPredicted RBP18.65■□□□□ 0.58
NUP88-207ENST00000573584 MYRIPQ8NFW9 859 aa18.65■□□□□ 0.58
NUP88-207ENST00000573584 HIP1O00291 1037 aa18.65■□□□□ 0.58
NUP88-207ENST00000573584 NMIQ13287 307 aaPredicted RBP18.65■□□□□ 0.58
NUP88-207ENST00000573584 PSMA5P28066 241 aa18.64■□□□□ 0.58
NUP88-207ENST00000573584 G3BP1Q13283 466 aaKnown RBP eCLIP18.64■□□□□ 0.58
NUP88-207ENST00000573584 EAF2Q96CJ1 260 aaPredicted RBP18.64■□□□□ 0.58
NUP88-207ENST00000573584 CCDC8Q9H0W5 538 aaPredicted RBP18.64■□□□□ 0.58
NUP88-207ENST00000573584 RNMTO43148 476 aaKnown RBP18.64■□□□□ 0.57
NUP88-207ENST00000573584 SASH1O94885 1247 aa18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms