RNA–Protein interactions for RNA: ENST00000573169.1

NUP88-206, Transcript of nucleoporin 88, humanhuman

TSL 1 (best)

Gene NUP88, Length 1,195 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-206ENST00000573169 CRISPLD2Q9H0B8 497 aa8.51□□□□□ -1.05
NUP88-206ENST00000573169 WWC3Q9ULE0 1092 aa8.51□□□□□ -1.05
NUP88-206ENST00000573169 IGSF1Q8N6C5 1336 aa8.51□□□□□ -1.05
NUP88-206ENST00000573169 ZNF521Q96K83 1311 aa8.51□□□□□ -1.05
NUP88-206ENST00000573169 ATP6V1AP38606 617 aa8.5□□□□□ -1.05
NUP88-206ENST00000573169 E2F4Q16254 413 aa8.5□□□□□ -1.05
NUP88-206ENST00000573169 IL27Q8NEV9 243 aa8.5□□□□□ -1.05
NUP88-206ENST00000573169 FLAD1Q8NFF5 587 aa8.5□□□□□ -1.05
NUP88-206ENST00000573169 SLC4A9Q96Q91 983 aa8.5□□□□□ -1.05
NUP88-206ENST00000573169 NPC1L1Q9UHC9 1359 aa8.49□□□□□ -1.05
NUP88-206ENST00000573169 GNPATO15228 680 aa8.49□□□□□ -1.05
NUP88-206ENST00000573169 PLEKHO1Q53GL0 409 aaPredicted RBP8.49□□□□□ -1.05
NUP88-206ENST00000573169 SULT6B1Q6IMI4 303 aa8.49□□□□□ -1.05
NUP88-206ENST00000573169 ZNF530Q6P9A1 599 aaPredicted RBP8.49□□□□□ -1.05
NUP88-206ENST00000573169 TMEM121BQ9BXQ6 578 aaPredicted RBP8.49□□□□□ -1.05
NUP88-206ENST00000573169 COLQQ9Y215 455 aaPredicted RBP8.49□□□□□ -1.05
NUP88-206ENST00000573169 UTRNP46939 3433 aa8.49□□□□□ -1.05
NUP88-206ENST00000573169 KDM6AO15550 1401 aaPredicted RBP8.48□□□□□ -1.05
NUP88-206ENST00000573169 IL13P35225 146 aa8.48□□□□□ -1.05
NUP88-206ENST00000573169 CNGB1Q14028 1251 aaPredicted RBP8.48□□□□□ -1.05
NUP88-206ENST00000573169 NFKBIBQ15653 356 aa8.48□□□□□ -1.05
NUP88-206ENST00000573169 FAM161AQ3B820 660 aa8.48□□□□□ -1.05
NUP88-206ENST00000573169 C3orf67Q6ZVT6 689 aa8.48□□□□□ -1.05
NUP88-206ENST00000573169 TRMT2AQ8IZ69 625 aaKnown RBP8.48□□□□□ -1.05
NUP88-206ENST00000573169 NGEFQ8N5V2 710 aa8.48□□□□□ -1.05
NUP88-206ENST00000573169 GPHNQ9NQX3 736 aaPredicted RBP8.48□□□□□ -1.05
NUP88-206ENST00000573169 KNSTRNQ9Y448 316 aa8.48□□□□□ -1.05
NUP88-206ENST00000573169 SALL2Q9Y467 1007 aaPredicted RBP8.48□□□□□ -1.05
NUP88-206ENST00000573169 CD2APQ9Y5K6 639 aa8.48□□□□□ -1.05
NUP88-206ENST00000573169 UBR3Q6ZT12 1888 aa8.48□□□□□ -1.05
NUP88-206ENST00000573169 CHD4Q14839 1912 aa8.48□□□□□ -1.05
NUP88-206ENST00000573169 ERVV-2B6SEH9 535 aa8.47□□□□□ -1.05
NUP88-206ENST00000573169 SSFA2P28290 1259 aa8.47□□□□□ -1.05
NUP88-206ENST00000573169 CABP4P57796 275 aa8.47□□□□□ -1.05
NUP88-206ENST00000573169 MFSD10Q14728 455 aa8.47□□□□□ -1.05
NUP88-206ENST00000573169 DCAF5Q96JK2 942 aa8.47□□□□□ -1.05
NUP88-206ENST00000573169 CRBNQ96SW2 442 aa8.47□□□□□ -1.05
NUP88-206ENST00000573169 KDRP35968 1356 aa8.47□□□□□ -1.05
NUP88-206ENST00000573169 GRIN3BO60391 1043 aa8.46□□□□□ -1.06
NUP88-206ENST00000573169 PTCD1O75127 700 aaKnown RBP8.46□□□□□ -1.06
NUP88-206ENST00000573169 MTHFSP49914 203 aa8.46□□□□□ -1.06
NUP88-206ENST00000573169 C1QTNF8P60827 252 aa8.46□□□□□ -1.06
NUP88-206ENST00000573169 C8orf34Q49A92 452 aa8.46□□□□□ -1.06
NUP88-206ENST00000573169 NFATC2IPQ8NCF5 419 aa8.46□□□□□ -1.06
NUP88-206ENST00000573169 POTEFA5A3E0 1075 aa8.45□□□□□ -1.06
NUP88-206ENST00000573169 HSP90AB1P08238 724 aaKnown RBP8.45□□□□□ -1.06
NUP88-206ENST00000573169 MMP10P09238 476 aa8.45□□□□□ -1.06
NUP88-206ENST00000573169 HMOX1P09601 288 aa8.45□□□□□ -1.06
NUP88-206ENST00000573169 AMOTQ4VCS5 1084 aa8.45□□□□□ -1.06
NUP88-206ENST00000573169 C1orf141Q5JVX7 400 aa8.45□□□□□ -1.06
NUP88-206ENST00000573169 PPP1R15BQ5SWA1 713 aa8.45□□□□□ -1.06
NUP88-206ENST00000573169 CC2D1BQ5T0F9 858 aaKnown RBP8.45□□□□□ -1.06
NUP88-206ENST00000573169 TRAPPC3LQ5T215 181 aa8.45□□□□□ -1.06
NUP88-206ENST00000573169 DUSP27Q5VZP5 1158 aa8.45□□□□□ -1.06
NUP88-206ENST00000573169 FAM43AQ8N2R8 423 aa8.45□□□□□ -1.06
NUP88-206ENST00000573169 UBE2Q2Q8WVN8 375 aa8.45□□□□□ -1.06
NUP88-206ENST00000573169 ARHGEF1Q92888 912 aaKnown RBP8.45□□□□□ -1.06
NUP88-206ENST00000573169 CDCA7LQ96GN5 454 aa8.45□□□□□ -1.06
NUP88-206ENST00000573169 RTCBQ9Y3I0 505 aaKnown RBP8.45□□□□□ -1.06
NUP88-206ENST00000573169 LAS1LQ9Y4W2 734 aaKnown RBP8.45□□□□□ -1.06
NUP88-206ENST00000573169 SENP3-EIF4A1A0A087X0R7 540 aa8.44□□□□□ -1.06
NUP88-206ENST00000573169 HMGB2P26583 209 aaKnown RBP8.44□□□□□ -1.06
NUP88-206ENST00000573169 AAMPQ13685 434 aa8.44□□□□□ -1.06
NUP88-206ENST00000573169 TPRNQ4KMQ1 711 aa8.44□□□□□ -1.06
NUP88-206ENST00000573169 NPM2Q86SE8 214 aaKnown RBP8.44□□□□□ -1.06
NUP88-206ENST00000573169 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.44□□□□□ -1.06
NUP88-206ENST00000573169 KCNV2Q8TDN2 545 aa8.44□□□□□ -1.06
NUP88-206ENST00000573169 LGR6Q9HBX8 967 aa8.44□□□□□ -1.06
NUP88-206ENST00000573169 SRP68Q9UHB9 627 aaKnown RBP8.44□□□□□ -1.06
NUP88-206ENST00000573169 GOLGB1Q14789 3259 aaKnown RBP8.43□□□□□ -1.06
NUP88-206ENST00000573169 A0A0G2JLW4 131 aa8.43□□□□□ -1.06
NUP88-206ENST00000573169 TULP1O00294 542 aaPredicted RBP8.43□□□□□ -1.06
NUP88-206ENST00000573169 ST18O60284 1047 aa8.43□□□□□ -1.06
NUP88-206ENST00000573169 GIGYF1O75420 1035 aaPredicted RBP8.43□□□□□ -1.06
NUP88-206ENST00000573169 RPS6KA4O75676 772 aa8.43□□□□□ -1.06
NUP88-206ENST00000573169 GYS1P13807 737 aa8.43□□□□□ -1.06
NUP88-206ENST00000573169 RC3H1Q5TC82 1133 aaKnown RBP8.43□□□□□ -1.06
NUP88-206ENST00000573169 ZNF526Q8TF50 670 aaPredicted RBP8.43□□□□□ -1.06
NUP88-206ENST00000573169 CNTNAP4Q9C0A0 1308 aa8.43□□□□□ -1.06
NUP88-206ENST00000573169 PLEKHG2Q9H7P9 1386 aa8.43□□□□□ -1.06
NUP88-206ENST00000573169 ATP10DQ9P241 1426 aa8.43□□□□□ -1.06
NUP88-206ENST00000573169 RFC4P35249 363 aa8.42□□□□□ -1.06
NUP88-206ENST00000573169 CRKLP46109 303 aaKnown RBP8.42□□□□□ -1.06
NUP88-206ENST00000573169 SLC39A6Q13433 755 aa8.42□□□□□ -1.06
NUP88-206ENST00000573169 MTHFSDQ2M296 383 aaKnown RBP8.42□□□□□ -1.06
NUP88-206ENST00000573169 AKAP4Q5JQC9 854 aa8.42□□□□□ -1.06
NUP88-206ENST00000573169 INTS5Q6P9B9 1019 aaKnown RBP8.42□□□□□ -1.06
NUP88-206ENST00000573169 DNAJC10Q8IXB1 793 aa8.42□□□□□ -1.06
NUP88-206ENST00000573169 FRAT1Q92837 279 aaPredicted RBP8.42□□□□□ -1.06
NUP88-206ENST00000573169 RSPH6AQ9H0K4 717 aa8.42□□□□□ -1.06
NUP88-206ENST00000573169 CICQ96RK0 1608 aaPredicted RBP8.42□□□□□ -1.06
NUP88-206ENST00000573169 COL5A3P25940 1745 aaPredicted RBP8.42□□□□□ -1.06
NUP88-206ENST00000573169 TJP1Q07157 1748 aa8.41□□□□□ -1.06
NUP88-206ENST00000573169 PXDNLA1KZ92 1463 aa8.41□□□□□ -1.06
NUP88-206ENST00000573169 RNMTO43148 476 aaKnown RBP8.41□□□□□ -1.06
NUP88-206ENST00000573169 DIAPH1O60610 1272 aaKnown RBP8.41□□□□□ -1.06
NUP88-206ENST00000573169 DPEP1P16444 411 aa8.41□□□□□ -1.06
NUP88-206ENST00000573169 FOXK1P85037 733 aa8.41□□□□□ -1.06
NUP88-206ENST00000573169 SLFN5Q08AF3 891 aa8.41□□□□□ -1.06
NUP88-206ENST00000573169 NLGN1Q8N2Q7 840 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms