RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 ZBTB7AO95365 584 aa10.07□□□□□ -0.8
NUP88-205ENST00000572809 PHKG2P15735 406 aa10.07□□□□□ -0.8
NUP88-205ENST00000572809 IL13P35225 146 aa10.07□□□□□ -0.8
NUP88-205ENST00000572809 CNGB1Q14028 1251 aaPredicted RBP10.07□□□□□ -0.8
NUP88-205ENST00000572809 PLEKHO1Q53GL0 409 aaPredicted RBP10.07□□□□□ -0.8
NUP88-205ENST00000572809 PPP1R1BQ9UD71 204 aaPredicted RBP10.07□□□□□ -0.8
NUP88-205ENST00000572809 CCNL1Q9UK58 526 aaPredicted RBP10.07□□□□□ -0.8
NUP88-205ENST00000572809 SRCAPQ6ZRS2 3230 aa10.07□□□□□ -0.8
NUP88-205ENST00000572809 HMGB2P26583 209 aaKnown RBP10.06□□□□□ -0.8
NUP88-205ENST00000572809 ZNF827Q17R98 1081 aa10.06□□□□□ -0.8
NUP88-205ENST00000572809 PROX2Q3B8N5 592 aa10.06□□□□□ -0.8
NUP88-205ENST00000572809 AMOTQ4VCS5 1084 aa10.06□□□□□ -0.8
NUP88-205ENST00000572809 SULT6B1Q6IMI4 303 aa10.06□□□□□ -0.8
NUP88-205ENST00000572809 PIGBQ92521 554 aa10.06□□□□□ -0.8
NUP88-205ENST00000572809 SMARCC1Q92922 1105 aaPredicted RBP10.06□□□□□ -0.8
NUP88-205ENST00000572809 TFCP2L1Q9NZI6 479 aa10.06□□□□□ -0.8
NUP88-205ENST00000572809 RABGEF1Q9UJ41 708 aa10.06□□□□□ -0.8
NUP88-205ENST00000572809 DOT1LQ8TEK3 1739 aa10.05□□□□□ -0.8
NUP88-205ENST00000572809 BCAMP50895 628 aa10.05□□□□□ -0.8
NUP88-205ENST00000572809 CAMK2BQ13554 666 aa10.05□□□□□ -0.8
NUP88-205ENST00000572809 MTFR1LQ9H019 292 aa10.05□□□□□ -0.8
NUP88-205ENST00000572809 HSP90AB1P08238 724 aaKnown RBP10.04□□□□□ -0.8
NUP88-205ENST00000572809 AEBP1Q8IUX7 1158 aa10.04□□□□□ -0.8
NUP88-205ENST00000572809 SLC16A10Q8TF71 515 aa10.04□□□□□ -0.8
NUP88-205ENST00000572809 TMOD3Q9NYL9 352 aa10.04□□□□□ -0.8
NUP88-205ENST00000572809 PKD1L3Q7Z443 1732 aa10.04□□□□□ -0.8
NUP88-205ENST00000572809 PLEKHG2Q9H7P9 1386 aa10.03□□□□□ -0.8
NUP88-205ENST00000572809 NPC1L1Q9UHC9 1359 aa10.03□□□□□ -0.8
NUP88-205ENST00000572809 ERVV-2B6SEH9 535 aa10.03□□□□□ -0.8
NUP88-205ENST00000572809 PPP1R3GB7ZBB8 358 aa10.03□□□□□ -0.8
NUP88-205ENST00000572809 DIAPH1O60610 1272 aaKnown RBP10.03□□□□□ -0.8
NUP88-205ENST00000572809 ZNF530Q6P9A1 599 aaPredicted RBP10.03□□□□□ -0.8
NUP88-205ENST00000572809 DCAF5Q96JK2 942 aa10.03□□□□□ -0.8
NUP88-205ENST00000572809 PNPLA7Q6ZV29 1317 aa10.03□□□□□ -0.8
NUP88-205ENST00000572809 PALLDQ8WX93 1383 aa10.02□□□□□ -0.8
NUP88-205ENST00000572809 LY75O60449 1722 aa10.02□□□□□ -0.8
NUP88-205ENST00000572809 CASZ1Q86V15 1759 aa10.02□□□□□ -0.81
NUP88-205ENST00000572809 MAP3K9P80192 1104 aa10.02□□□□□ -0.81
NUP88-205ENST00000572809 C1orf141Q5JVX7 400 aa10.02□□□□□ -0.81
NUP88-205ENST00000572809 ASAP1Q9ULH1 1129 aa10.02□□□□□ -0.81
NUP88-205ENST00000572809 PAPPAQ13219 1627 aa10.01□□□□□ -0.81
NUP88-205ENST00000572809 LOC102724428A0A0B4J2F2 783 aa10.01□□□□□ -0.81
NUP88-205ENST00000572809 SOWAHBA6NEL2 793 aa10.01□□□□□ -0.81
NUP88-205ENST00000572809 HMOX1P09601 288 aa10.01□□□□□ -0.81
NUP88-205ENST00000572809 COL9A1P20849 921 aa10.01□□□□□ -0.81
NUP88-205ENST00000572809 SIK1P57059 783 aa10.01□□□□□ -0.81
NUP88-205ENST00000572809 CABP4P57796 275 aa10.01□□□□□ -0.81
NUP88-205ENST00000572809 COL23A1Q86Y22 540 aaPredicted RBP10.01□□□□□ -0.81
NUP88-205ENST00000572809 ZC3H15Q8WU90 426 aaKnown RBP10.01□□□□□ -0.81
NUP88-205ENST00000572809 ATG3Q9NT62 314 aa10.01□□□□□ -0.81
NUP88-205ENST00000572809 KDRP35968 1356 aa10.01□□□□□ -0.81
NUP88-205ENST00000572809 ITGB4P16144 1822 aa10□□□□□ -0.81
NUP88-205ENST00000572809 ATP6V1AP38606 617 aa10□□□□□ -0.81
NUP88-205ENST00000572809 FLAD1Q8NFF5 587 aa10□□□□□ -0.81
NUP88-205ENST00000572809 ARXQ96QS3 562 aa10□□□□□ -0.81
NUP88-205ENST00000572809 PCDHGA10Q9Y5H3 936 aa10□□□□□ -0.81
NUP88-205ENST00000572809 TOGARAM1Q9Y4F4 1720 aa9.99□□□□□ -0.81
NUP88-205ENST00000572809 U2SURPO15042 1029 aaKnown RBP9.99□□□□□ -0.81
NUP88-205ENST00000572809 POLD1P28340 1107 aa9.99□□□□□ -0.81
NUP88-205ENST00000572809 KCNC4Q03721 635 aa9.99□□□□□ -0.81
NUP88-205ENST00000572809 AKAP4Q5JQC9 854 aa9.99□□□□□ -0.81
NUP88-205ENST00000572809 NFATC2IPQ8NCF5 419 aa9.99□□□□□ -0.81
NUP88-205ENST00000572809 SYT17Q9BSW7 474 aa9.99□□□□□ -0.81
NUP88-205ENST00000572809 WBP1LQ9NX94 342 aa9.99□□□□□ -0.81
NUP88-205ENST00000572809 LAPTM4BQ86VI4 370 aa9.98□□□□□ -0.81
NUP88-205ENST00000572809 ZFRQ96KR1 1074 aaKnown RBP9.98□□□□□ -0.81
NUP88-205ENST00000572809 AK7Q96M32 723 aa9.98□□□□□ -0.81
NUP88-205ENST00000572809 CFAP53Q96M91 514 aa9.98□□□□□ -0.81
NUP88-205ENST00000572809 FHDC1Q9C0D6 1143 aaPredicted RBP9.98□□□□□ -0.81
NUP88-205ENST00000572809 KIAA1468Q9P260 1216 aa9.98□□□□□ -0.81
NUP88-205ENST00000572809 PPP2R1AP30153 589 aa9.97□□□□□ -0.81
NUP88-205ENST00000572809 ITPK1Q13572 414 aa9.97□□□□□ -0.81
NUP88-205ENST00000572809 TMEM132AQ24JP5 1023 aa9.97□□□□□ -0.81
NUP88-205ENST00000572809 MTHFSDQ2M296 383 aaKnown RBP9.97□□□□□ -0.81
NUP88-205ENST00000572809 NYAP1Q6ZVC0 841 aa9.97□□□□□ -0.81
NUP88-205ENST00000572809 LINC00116Q8NCU8 138 aa9.97□□□□□ -0.81
NUP88-205ENST00000572809 LGR6Q9HBX8 967 aa9.97□□□□□ -0.81
NUP88-205ENST00000572809 NUDCQ9Y266 331 aa9.97□□□□□ -0.81
NUP88-205ENST00000572809 RNMTO43148 476 aaKnown RBP9.96□□□□□ -0.82
NUP88-205ENST00000572809 SLC4A9Q96Q91 983 aa9.96□□□□□ -0.82
NUP88-205ENST00000572809 KDM6AO15550 1401 aaPredicted RBP9.96□□□□□ -0.82
NUP88-205ENST00000572809 QSER1Q2KHR3 1735 aa9.96□□□□□ -0.82
NUP88-205ENST00000572809 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.95□□□□□ -0.82
NUP88-205ENST00000572809 SPDYE16A6NNV3 312 aaPredicted RBP9.95□□□□□ -0.82
NUP88-205ENST00000572809 PTCD1O75127 700 aaKnown RBP9.95□□□□□ -0.82
NUP88-205ENST00000572809 PHF14O94880 888 aa9.95□□□□□ -0.82
NUP88-205ENST00000572809 SSFA2P28290 1259 aa9.95□□□□□ -0.82
NUP88-205ENST00000572809 SMIM5Q71RC9 77 aa9.95□□□□□ -0.82
NUP88-205ENST00000572809 SLC52A2Q9HAB3 445 aa9.95□□□□□ -0.82
NUP88-205ENST00000572809 C5P01031 1676 aa9.95□□□□□ -0.82
NUP88-205ENST00000572809 TAF1LQ8IZX4 1826 aa9.94□□□□□ -0.82
NUP88-205ENST00000572809 GNPATO15228 680 aa9.94□□□□□ -0.82
NUP88-205ENST00000572809 TRAPPC3LQ5T215 181 aa9.94□□□□□ -0.82
NUP88-205ENST00000572809 RC3H1Q5TC82 1133 aaKnown RBP9.94□□□□□ -0.82
NUP88-205ENST00000572809 MSL1Q68DK7 614 aa9.94□□□□□ -0.82
NUP88-205ENST00000572809 TYW1BQ6NUM6 668 aa9.94□□□□□ -0.82
NUP88-205ENST00000572809 AMIGO3Q86WK7 504 aa9.94□□□□□ -0.82
NUP88-205ENST00000572809 EMILIN3Q9NT22 766 aa9.94□□□□□ -0.82
NUP88-205ENST00000572809 SEPT9Q9UHD8 586 aaPredicted RBP9.94□□□□□ -0.82
NUP88-205ENST00000572809 RTCBQ9Y3I0 505 aaKnown RBP9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms