RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 PTGS1P23219 599 aa17.25■□□□□ 0.35
VPS35-210ENST00000568784 SPATA32Q96LK8 384 aa17.25■□□□□ 0.35
VPS35-210ENST00000568784 MAP3K11Q16584 847 aa17.25■□□□□ 0.35
VPS35-210ENST00000568784 BLOC1S2Q6QNY1 142 aa17.25■□□□□ 0.35
VPS35-210ENST00000568784 PIBF1Q8WXW3 757 aa17.25■□□□□ 0.35
VPS35-210ENST00000568784 FAM227BQ96M60 508 aa17.25■□□□□ 0.35
VPS35-210ENST00000568784 ARHGAP31Q2M1Z3 1444 aa17.25■□□□□ 0.35
VPS35-210ENST00000568784 BTBD11A6QL63 1104 aa17.25■□□□□ 0.35
VPS35-210ENST00000568784 NPHP1O15259 732 aa17.25■□□□□ 0.35
VPS35-210ENST00000568784 RBM8AQ9Y5S9 174 aaKnown RBP17.25■□□□□ 0.35
VPS35-210ENST00000568784 DACT1Q9NYF0 836 aa17.24■□□□□ 0.35
VPS35-210ENST00000568784 ROBO2Q9HCK4 1378 aa17.24■□□□□ 0.35
VPS35-210ENST00000568784 TERF1P54274 439 aa17.24■□□□□ 0.35
VPS35-210ENST00000568784 UVSSAQ2YD98 709 aa17.24■□□□□ 0.35
VPS35-210ENST00000568784 LRRC2Q9BYS8 371 aa17.24■□□□□ 0.35
VPS35-210ENST00000568784 ECHDC1Q9NTX5 307 aa17.24■□□□□ 0.35
VPS35-210ENST00000568784 KLHDC4Q8TBB5 520 aa17.24■□□□□ 0.35
VPS35-210ENST00000568784 DNAJC2Q99543 621 aaKnown RBP17.24■□□□□ 0.35
VPS35-210ENST00000568784 PYCARDQ9ULZ3 195 aa17.24■□□□□ 0.35
VPS35-210ENST00000568784 MAP3K2Q9Y2U5 619 aa17.24■□□□□ 0.35
VPS35-210ENST00000568784 FLT4P35916 1363 aa17.23■□□□□ 0.35
VPS35-210ENST00000568784 SSH3Q8TE77 659 aa17.23■□□□□ 0.35
VPS35-210ENST00000568784 STAP2Q9UGK3 403 aa17.23■□□□□ 0.35
VPS35-210ENST00000568784 MYL6BP14649 208 aa17.23■□□□□ 0.35
VPS35-210ENST00000568784 CCDC186Q7Z3E2 898 aa17.23■□□□□ 0.35
VPS35-210ENST00000568784 LSG1Q9H089 658 aaKnown RBP17.23■□□□□ 0.35
VPS35-210ENST00000568784 NDUFB9Q9Y6M9 179 aa17.23■□□□□ 0.35
VPS35-210ENST00000568784 GOLGA6L19H0YKK7 550 aa17.23■□□□□ 0.35
VPS35-210ENST00000568784 PDCL2Q8N4E4 241 aa17.23■□□□□ 0.35
VPS35-210ENST00000568784 MYRIPQ8NFW9 859 aa17.23■□□□□ 0.35
VPS35-210ENST00000568784 MYO5BQ9ULV0 1848 aa17.22■□□□□ 0.35
VPS35-210ENST00000568784 C1orf141Q5JVX7 400 aa17.22■□□□□ 0.35
VPS35-210ENST00000568784 ZRSR1Q15695 479 aaKnown RBP17.22■□□□□ 0.35
VPS35-210ENST00000568784 ME3Q16798 604 aa17.22■□□□□ 0.35
VPS35-210ENST00000568784 CDC37L1Q7L3B6 337 aa17.22■□□□□ 0.35
VPS35-210ENST00000568784 LRRC59Q96AG4 307 aaKnown RBP17.22■□□□□ 0.35
VPS35-210ENST00000568784 BECN2A8MW95 431 aa17.21■□□□□ 0.35
VPS35-210ENST00000568784 LIG1P18858 919 aa17.21■□□□□ 0.35
VPS35-210ENST00000568784 RIC3Q7Z5B4 369 aa17.21■□□□□ 0.35
VPS35-210ENST00000568784 PI4K2BQ8TCG2 481 aa17.21■□□□□ 0.35
VPS35-210ENST00000568784 EDC3Q96F86 508 aaKnown RBP17.21■□□□□ 0.35
VPS35-210ENST00000568784 ANO6Q4KMQ2 910 aa17.21■□□□□ 0.35
VPS35-210ENST00000568784 RNF20Q5VTR2 975 aa17.21■□□□□ 0.35
VPS35-210ENST00000568784 MTMR6Q9Y217 621 aa17.21■□□□□ 0.35
VPS35-210ENST00000568784 NMIQ13287 307 aaPredicted RBP17.21■□□□□ 0.35
VPS35-210ENST00000568784 TPD52L1Q16890 204 aaPredicted RBP17.21■□□□□ 0.35
VPS35-210ENST00000568784 CRB1P82279 1406 aa17.21■□□□□ 0.35
VPS35-210ENST00000568784 LTKP29376 864 aa17.2■□□□□ 0.34
VPS35-210ENST00000568784 PIP4K2AP48426 406 aaPredicted RBP17.2■□□□□ 0.34
VPS35-210ENST00000568784 LRMPQ12912 555 aa17.2■□□□□ 0.34
VPS35-210ENST00000568784 FILIP1Q7Z7B0 1213 aa17.2■□□□□ 0.34
VPS35-210ENST00000568784 ZSCAN31Q96LW9 406 aaPredicted RBP17.2■□□□□ 0.34
VPS35-210ENST00000568784 HOXC9P31274 260 aa17.2■□□□□ 0.34
VPS35-210ENST00000568784 KNDC1Q76NI1 1749 aa17.2■□□□□ 0.34
VPS35-210ENST00000568784 RIOK3O14730 519 aaKnown RBP17.19■□□□□ 0.34
VPS35-210ENST00000568784 PSMA5P28066 241 aa17.19■□□□□ 0.34
VPS35-210ENST00000568784 DIP2CQ9Y2E4 1556 aa17.19■□□□□ 0.34
VPS35-210ENST00000568784 GUCY1B3Q02153 619 aa17.19■□□□□ 0.34
VPS35-210ENST00000568784 TYRO3Q06418 890 aa17.19■□□□□ 0.34
VPS35-210ENST00000568784 TTC6Q86TZ1 520 aa17.19■□□□□ 0.34
VPS35-210ENST00000568784 PRIMPOLQ96LW4 560 aa17.19■□□□□ 0.34
VPS35-210ENST00000568784 HYPKQ9NX55 129 aa17.19■□□□□ 0.34
VPS35-210ENST00000568784 A2ML1A8K2U0 1454 aa17.19■□□□□ 0.34
VPS35-210ENST00000568784 CREB3L3Q68CJ9 461 aa17.19■□□□□ 0.34
VPS35-210ENST00000568784 DNAJC25Q9H1X3 360 aa17.19■□□□□ 0.34
VPS35-210ENST00000568784 NEO1Q92859 1461 aa17.18■□□□□ 0.34
VPS35-210ENST00000568784 FMNL2Q96PY5 1086 aa17.18■□□□□ 0.34
VPS35-210ENST00000568784 BCL2L12Q9HB09 334 aa17.18■□□□□ 0.34
VPS35-210ENST00000568784 SH2B1Q9NRF2 756 aaPredicted RBP17.18■□□□□ 0.34
VPS35-210ENST00000568784 TPCN1Q9ULQ1 816 aa17.18■□□□□ 0.34
VPS35-210ENST00000568784 RPAP1Q9BWH6 1393 aaPredicted RBP17.18■□□□□ 0.34
VPS35-210ENST00000568784 PDCP20941 246 aa17.18■□□□□ 0.34
VPS35-210ENST00000568784 CCDC94Q9BW85 323 aaPredicted RBP17.18■□□□□ 0.34
VPS35-210ENST00000568784 PSME1Q06323 249 aa17.18■□□□□ 0.34
VPS35-210ENST00000568784 LARP1Q6PKG0 1096 aaKnown RBP17.18■□□□□ 0.34
VPS35-210ENST00000568784 SALL3Q9BXA9 1300 aa17.17■□□□□ 0.34
VPS35-210ENST00000568784 MAP3K5Q99683 1374 aa17.17■□□□□ 0.34
VPS35-210ENST00000568784 A0A087WWV3 80 aa17.17■□□□□ 0.34
VPS35-210ENST00000568784 PLEKHG3A1L390 1219 aa17.17■□□□□ 0.34
VPS35-210ENST00000568784 ZNF165P49910 485 aa17.17■□□□□ 0.34
VPS35-210ENST00000568784 FAM200AQ8TCP9 573 aa17.17■□□□□ 0.34
VPS35-210ENST00000568784 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.17■□□□□ 0.34
VPS35-210ENST00000568784 NRBP1Q9UHY1 535 aa17.17■□□□□ 0.34
VPS35-210ENST00000568784 V9GYY5 206 aaPredicted RBP17.17■□□□□ 0.34
VPS35-210ENST00000568784 KIF20BQ96Q89 1820 aa17.17■□□□□ 0.34
VPS35-210ENST00000568784 U2AF2P26368 475 aaKnown RBP eCLIP17.16■□□□□ 0.34
VPS35-210ENST00000568784 NEUROD6Q96NK8 337 aa17.16■□□□□ 0.34
VPS35-210ENST00000568784 TRMT1Q9NXH9 659 aaKnown RBP17.16■□□□□ 0.34
VPS35-210ENST00000568784 PPP6R1Q9UPN7 881 aa17.16■□□□□ 0.34
VPS35-210ENST00000568784 CCDC171Q6TFL3 1326 aa17.16■□□□□ 0.34
VPS35-210ENST00000568784 PRAMEF22A3QJZ6 481 aa17.16■□□□□ 0.34
VPS35-210ENST00000568784 ZNF330Q9Y3S2 320 aaPredicted RBP17.16■□□□□ 0.34
VPS35-210ENST00000568784 SBNO1A3KN83 1393 aa17.16■□□□□ 0.34
VPS35-210ENST00000568784 VPS53Q5VIR6 699 aa17.16■□□□□ 0.34
VPS35-210ENST00000568784 EVI5LQ96CN4 794 aa17.16■□□□□ 0.34
VPS35-210ENST00000568784 TTC14Q96N46 770 aa17.16■□□□□ 0.34
VPS35-210ENST00000568784 PROSER3Q2NL68 480 aa17.15■□□□□ 0.34
VPS35-210ENST00000568784 ERCC4Q92889 916 aaPredicted RBP17.15■□□□□ 0.34
VPS35-210ENST00000568784 JAK2O60674 1132 aa17.15■□□□□ 0.34
VPS35-210ENST00000568784 TNNT1P13805 278 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms